BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60610.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475269 jgi|Araly1|475269|fgenesh2_kg.2__399__AT1G60610.1 1807 0.0
> Ahg475269 jgi|Araly1|475269|fgenesh2_kg.2__399__AT1G60610.1
Length=1668
Score = 1807 bits (978), Expect = 0.0
Identities = 1162/1249 (93%), Gaps = 20/1249 (2%)
Strand=Plus/Plus
Query 534 CTGTGATAATGATTTCTTTTAG-GTTTGTAGGATCTGAAGGAAGCTACGGTTTAtttttt 592
||||||| |||||||||| | | || ||||||||||||| |||||| |||||| |||||
Sbjct 430 CTGTGATGATGATTTCTTGT-GTGTATGTAGGATCTGAAAGAAGCTTTGGTTTAATTTTT 488
Query 593 tttATGGGCAATC-TCTAACAGTTCTTTACGGGTATATATATACACATAAAACGGTTAAG 651
|| |||||||||| | ||| ||| ||||||||| |||||||||||| ||||||||||||
Sbjct 489 TTGATGGGCAATCAT-TAAGAGTACTTTACGGG--TATATATACACACAAAACGGTTAAG 545
Query 652 CTCTAGAGAAGATGTTGGGAGGCAACAATGATAACCCTGTGCCGCAGGTTCTAATGAACG 711
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 546 CTCTAGAGAAGATGTTGGGAGGCAACAATGAGAACCCTGTGCCGCAGGTTTTAATGAACG 605
Query 712 ACAGCCAGTTTCGGTATCAATCAAACACATCGTTGAATCAGCTTCACTTGCTTGGGACGA 771
|||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 606 ACAGCCAGTTTCAGTATCAAACAAATACATCGTTGAATCAGCTTCACTTGCTTGGGACAA 665
Query 772 TGAGAGCTGGTTGTACTATTGATCCTGTAAACTACTTTGCTAATGATAACCTTGCTCCTA 831
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 666 TGAGACCTGGTTGTACTATTGATCCCGTAAACTACTTTGCTAATGATAACCTTGCTCCTA 725
Query 832 TGATGCGGCTTAATAGCACACGCGGAAGGGAAACTGAAAACAACAATATTATGCAGAGAC 891
|||| |||| |||||||| ||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 726 TGATTCGGCATAATAGCAAACGCGAAAGGGAAACCGAAATCAACAATAATATGCAGAGAC 785
Query 892 AGCAGAAGCTGCAGATCTCTTTGAATTATAACTACAACAACAATAATACTGTTGTTCAAG 951
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 786 AGCAGAAGCTGCAGATCTCTTTGAATTATAACTACAACAAC---AATAGTGTTGTTCAAG 842
Query 952 ATGAAGTCCCAAAGCAGAACTTAGTGTCAACTGGTCTGAGACTATCTTATGATGATGATG 1011
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 843 ATGAAGTCCCAAAACAGAACTTAGTGTCAACTGGTCTGAGACTATCTTATAACGATGATG 902
Query 1012 AGCGCAACTCTTCTGTAACTTCAGCAAATGGAAGCATAACAACTCCAGTCTATCAGTCAC 1071
|||||||||||||||||||||| |||||| ||| || ||||||||||||| ||||||||
Sbjct 903 AGCGCAACTCTTCTGTAACTTCGGCAAATTTAAGTATCACAACTCCAGTCTTTCAGTCAC 962
Query 1072 TCGGTGACAATATCAGATTGGACCTCAATAGACAGAACGACGAGCTTGATCAGTTTATCA 1131
||||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||
Sbjct 963 TCGGTGACAATATCAGATTGGACCTTGATATACAGAAAGAGGAGCTTGATCAGTTTATCA 1022
Query 1132 AATTCCGGGCAGATCAAATGGCGAAAGGTGTGAGAGATATTAAACAGAGACATGTCACGT 1191
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1023 AATTCCGGGCAGATCAAATGGCGAAAGGTGTGAGAGATATAAAACAGAGACATGTCACGT 1082
Query 1192 CCTTTGTCACGGCCTTAGAGAAGGATGTGAGTAAGAAGCTTCAAGAGAAAGACCATGAGA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1083 CCTTTGTCACGGCCTTAGAGAAGGATGTGAGTAAGAAGCTTCAAGAGAAAGACCAGGAGA 1142
Query 1252 TTGAAAGCATGAACAAGAAGAACCGGGAACTCGTGGATAAGATAAAACAAGTGGCAGTGG 1311
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1143 TTGAAAGCATGAACAAGAAGAACCGGGAACTTGTGGATAAGATAAAACAAGTGGCAGTGG 1202
Query 1312 AAGCTCAGAACTGGCATTACAAAGCAAAATACAATGAATCTGTGGTTAATGCCTTAAAGG 1371
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1203 AAGCTCAGAACTGGCATTACAAAGCAAAGTACAATGAATCTGTGGTTAATGCCTTAAAGG 1262
Query 1372 TAAATTTGCAACAAGTGATGTCACATGGAAACGACAACAATGCAGTAGGAGGAGGAGTTG 1431
|||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |
Sbjct 1263 TAAACTTGCAACAAGTGATGTCGCATGGAAACGACAACAATGC---AGCAGGAGTAGTAG 1319
Query 1432 CTGATCATCATCAAATGAAAGAAGGGTTTGGGGATAGTGAGATTGATGACGAAGCAGCTT 1491
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1320 CTGATCATCATCAAATGAAAGAAGGGTTTGGGGATAGTGAGATTGATGACGAGGCAGCCT 1379
Query 1492 CTTACAATTACTTGAACATCCCGGGGATGCCAAGTACTGGGATGAGATGTAAGTTGTGTA 1551
| ||||| |||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1380 CATACAACTACTTGAACATCCCGGGGATACCAAGTGCTGGGATGAGATGTAAGTCGTGTA 1439
Query 1552 ACGTAAAGAATGTTTCGGTCTTGCTCGTGCCATGTAGGCACTTGAGTTTGTGTAAAGATT 1611
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1440 ACGTAAAGGATGTTTCGGTCTTGCTCGTGCCGTGTAGGCACTTGAGTTTGTGTAAAGACT 1499
Query 1612 GTGATGTGTTTACTGGTGTTTGTCCTGTTTGCCAGTCTTTGAAAACTTCTAGCGTTCAGG 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GTGATGTGTTTACTGGTGTTTGTCCTGTTTGCCAGTCTTTGAAAACTTCTAGCGTTCAGG 1559
Query 1672 TCTTCTTCTTCTGAGTTGTCTTCATACTCTTGAAAAGTAAATGGTGGA------TGAACA 1725
||||||||||||||||||||||||| |||||||||||| | || |||| ||||||
Sbjct 1560 TCTTCTTCTTCTGAGTTGTCTTCATGCTCTTGAAAAGTTACTGATGGAGAAACATGAACA 1619
Query 1726 TATTTGTATGTGATGGTGGTGATGA--ATGAAAACTTGGTCGAGTCTTT 1772
||||||||||||||| || |||||| ||||||||||| ||||||||||
Sbjct 1620 TATTTGTATGTGATGATGATGATGATGATGAAAACTTGCTCGAGTCTTT 1668
Score = 390 bits (211), Expect = 2e-107
Identities = 344/403 (85%), Gaps = 29/403 (7%)
Strand=Plus/Plus
Query 1 AGAAAAAGGACAGAGGGAAAATGGAGAAAAGTAGAGTAAAATGGCGTCACACCAGAGAGA 60
|||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1 AGAAAAAGGACAGAAGGAAAATGGAGAAAAGTAGAGTAAAATGGCGTCAC-C-AGAGAG- 57
Query 61 AGGCACAACTCACGGGGAAA-TCAGCAGAACCAATACCACCGCCACCGGTTACTATTACT 119
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 58 -G-CACAACTCACGGGGAAAATCAGCAGAACCAATACCACCGCCACCAACTACTATTATT 115
Query 120 ATTCTTGTTATCATCATCTCCCaa-aaaaaaaaTGTTAGTATTATTTTCGA--GT---CT 173
||||||||| |||||||| ||||| |||||||| | || ||||||||| || ||
Sbjct 116 ATTCTTGTTTTCATCATCACCCAACAAAAAAAAAAA-A-TACTATTTTCGATTGTTTTCT 173
Query 174 At-ttttcaagtttttgttttgtttttAATATCTCGACTTTGCCACCCAACTCCTCCCAC 232
| |||||||| ||| |||| || | |||||| || |||||||||||||| |||||||
Sbjct 174 CTATTTTCAAGAATTT-TTTT-TTAT-AATATC--GATTTTGCCACCCAACTTCTCCCAC 228
Query 233 TCCTTCACAACTGTGTCCTGTCCTCTGCTGatttctcacctttccatcattcatttcatt 292
|||||||| ||||||||||| | | |||| |||||||||| ||||||||||||||| ||
Sbjct 229 TCCTTCACCACTGTGTCCTG-C-T--GCTGCTTTCTCACCTCTCCATCATTCATTTCTTT 284
Query 293 c-tttcttttttc-cc-atccgtttcttttattcttctttctccttaaatttaaaatctt 349
| ||| ||||||| || ||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 285 CGTTTTTTTTTTCTCCCATCCGTTTCGTTTATTCTTCTTTCCCCTTAAATT-AAAATCTT 343
Query 350 tGAA-TTAAATTATTGGATTTTATTGTTTCAAAGCGTTTCTAT 391
| || |||||||||||||| || ||||||| ||||||||||
Sbjct 344 TTAAATTAAATTATTGGATATTGTTGTTTCTCTGCGTTTCTAT 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5