BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60610.1 Length=1772 Score E Sequences producing significant alignments: (Bits) Value Ahg475269 jgi|Araly1|475269|fgenesh2_kg.2__399__AT1G60610.1 1807 0.0 > Ahg475269 jgi|Araly1|475269|fgenesh2_kg.2__399__AT1G60610.1 Length=1668 Score = 1807 bits (978), Expect = 0.0 Identities = 1162/1249 (93%), Gaps = 20/1249 (2%) Strand=Plus/Plus Query 534 CTGTGATAATGATTTCTTTTAG-GTTTGTAGGATCTGAAGGAAGCTACGGTTTAtttttt 592 ||||||| |||||||||| | | || ||||||||||||| |||||| |||||| ||||| Sbjct 430 CTGTGATGATGATTTCTTGT-GTGTATGTAGGATCTGAAAGAAGCTTTGGTTTAATTTTT 488 Query 593 tttATGGGCAATC-TCTAACAGTTCTTTACGGGTATATATATACACATAAAACGGTTAAG 651 || |||||||||| | ||| ||| ||||||||| |||||||||||| |||||||||||| Sbjct 489 TTGATGGGCAATCAT-TAAGAGTACTTTACGGG--TATATATACACACAAAACGGTTAAG 545 Query 652 CTCTAGAGAAGATGTTGGGAGGCAACAATGATAACCCTGTGCCGCAGGTTCTAATGAACG 711 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 546 CTCTAGAGAAGATGTTGGGAGGCAACAATGAGAACCCTGTGCCGCAGGTTTTAATGAACG 605 Query 712 ACAGCCAGTTTCGGTATCAATCAAACACATCGTTGAATCAGCTTCACTTGCTTGGGACGA 771 |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| | Sbjct 606 ACAGCCAGTTTCAGTATCAAACAAATACATCGTTGAATCAGCTTCACTTGCTTGGGACAA 665 Query 772 TGAGAGCTGGTTGTACTATTGATCCTGTAAACTACTTTGCTAATGATAACCTTGCTCCTA 831 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 666 TGAGACCTGGTTGTACTATTGATCCCGTAAACTACTTTGCTAATGATAACCTTGCTCCTA 725 Query 832 TGATGCGGCTTAATAGCACACGCGGAAGGGAAACTGAAAACAACAATATTATGCAGAGAC 891 |||| |||| |||||||| ||||| ||||||||| |||| |||||||| ||||||||||| Sbjct 726 TGATTCGGCATAATAGCAAACGCGAAAGGGAAACCGAAATCAACAATAATATGCAGAGAC 785 Query 892 AGCAGAAGCTGCAGATCTCTTTGAATTATAACTACAACAACAATAATACTGTTGTTCAAG 951 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 786 AGCAGAAGCTGCAGATCTCTTTGAATTATAACTACAACAAC---AATAGTGTTGTTCAAG 842 Query 952 ATGAAGTCCCAAAGCAGAACTTAGTGTCAACTGGTCTGAGACTATCTTATGATGATGATG 1011 ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 843 ATGAAGTCCCAAAACAGAACTTAGTGTCAACTGGTCTGAGACTATCTTATAACGATGATG 902 Query 1012 AGCGCAACTCTTCTGTAACTTCAGCAAATGGAAGCATAACAACTCCAGTCTATCAGTCAC 1071 |||||||||||||||||||||| |||||| ||| || ||||||||||||| |||||||| Sbjct 903 AGCGCAACTCTTCTGTAACTTCGGCAAATTTAAGTATCACAACTCCAGTCTTTCAGTCAC 962 Query 1072 TCGGTGACAATATCAGATTGGACCTCAATAGACAGAACGACGAGCTTGATCAGTTTATCA 1131 ||||||||||||||||||||||||| ||| |||||| || ||||||||||||||||||| Sbjct 963 TCGGTGACAATATCAGATTGGACCTTGATATACAGAAAGAGGAGCTTGATCAGTTTATCA 1022 Query 1132 AATTCCGGGCAGATCAAATGGCGAAAGGTGTGAGAGATATTAAACAGAGACATGTCACGT 1191 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1023 AATTCCGGGCAGATCAAATGGCGAAAGGTGTGAGAGATATAAAACAGAGACATGTCACGT 1082 Query 1192 CCTTTGTCACGGCCTTAGAGAAGGATGTGAGTAAGAAGCTTCAAGAGAAAGACCATGAGA 1251 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1083 CCTTTGTCACGGCCTTAGAGAAGGATGTGAGTAAGAAGCTTCAAGAGAAAGACCAGGAGA 1142 Query 1252 TTGAAAGCATGAACAAGAAGAACCGGGAACTCGTGGATAAGATAAAACAAGTGGCAGTGG 1311 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1143 TTGAAAGCATGAACAAGAAGAACCGGGAACTTGTGGATAAGATAAAACAAGTGGCAGTGG 1202 Query 1312 AAGCTCAGAACTGGCATTACAAAGCAAAATACAATGAATCTGTGGTTAATGCCTTAAAGG 1371 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1203 AAGCTCAGAACTGGCATTACAAAGCAAAGTACAATGAATCTGTGGTTAATGCCTTAAAGG 1262 Query 1372 TAAATTTGCAACAAGTGATGTCACATGGAAACGACAACAATGCAGTAGGAGGAGGAGTTG 1431 |||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| | Sbjct 1263 TAAACTTGCAACAAGTGATGTCGCATGGAAACGACAACAATGC---AGCAGGAGTAGTAG 1319 Query 1432 CTGATCATCATCAAATGAAAGAAGGGTTTGGGGATAGTGAGATTGATGACGAAGCAGCTT 1491 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1320 CTGATCATCATCAAATGAAAGAAGGGTTTGGGGATAGTGAGATTGATGACGAGGCAGCCT 1379 Query 1492 CTTACAATTACTTGAACATCCCGGGGATGCCAAGTACTGGGATGAGATGTAAGTTGTGTA 1551 | ||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||||| Sbjct 1380 CATACAACTACTTGAACATCCCGGGGATACCAAGTGCTGGGATGAGATGTAAGTCGTGTA 1439 Query 1552 ACGTAAAGAATGTTTCGGTCTTGCTCGTGCCATGTAGGCACTTGAGTTTGTGTAAAGATT 1611 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1440 ACGTAAAGGATGTTTCGGTCTTGCTCGTGCCGTGTAGGCACTTGAGTTTGTGTAAAGACT 1499 Query 1612 GTGATGTGTTTACTGGTGTTTGTCCTGTTTGCCAGTCTTTGAAAACTTCTAGCGTTCAGG 1671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 GTGATGTGTTTACTGGTGTTTGTCCTGTTTGCCAGTCTTTGAAAACTTCTAGCGTTCAGG 1559 Query 1672 TCTTCTTCTTCTGAGTTGTCTTCATACTCTTGAAAAGTAAATGGTGGA------TGAACA 1725 ||||||||||||||||||||||||| |||||||||||| | || |||| |||||| Sbjct 1560 TCTTCTTCTTCTGAGTTGTCTTCATGCTCTTGAAAAGTTACTGATGGAGAAACATGAACA 1619 Query 1726 TATTTGTATGTGATGGTGGTGATGA--ATGAAAACTTGGTCGAGTCTTT 1772 ||||||||||||||| || |||||| ||||||||||| |||||||||| Sbjct 1620 TATTTGTATGTGATGATGATGATGATGATGAAAACTTGCTCGAGTCTTT 1668 Score = 390 bits (211), Expect = 2e-107 Identities = 344/403 (85%), Gaps = 29/403 (7%) Strand=Plus/Plus Query 1 AGAAAAAGGACAGAGGGAAAATGGAGAAAAGTAGAGTAAAATGGCGTCACACCAGAGAGA 60 |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1 AGAAAAAGGACAGAAGGAAAATGGAGAAAAGTAGAGTAAAATGGCGTCAC-C-AGAGAG- 57 Query 61 AGGCACAACTCACGGGGAAA-TCAGCAGAACCAATACCACCGCCACCGGTTACTATTACT 119 | ||||||||||||||||| |||||||||||||||||||||||||| |||||||| | Sbjct 58 -G-CACAACTCACGGGGAAAATCAGCAGAACCAATACCACCGCCACCAACTACTATTATT 115 Query 120 ATTCTTGTTATCATCATCTCCCaa-aaaaaaaaTGTTAGTATTATTTTCGA--GT---CT 173 ||||||||| |||||||| ||||| |||||||| | || ||||||||| || || Sbjct 116 ATTCTTGTTTTCATCATCACCCAACAAAAAAAAAAA-A-TACTATTTTCGATTGTTTTCT 173 Query 174 At-ttttcaagtttttgttttgtttttAATATCTCGACTTTGCCACCCAACTCCTCCCAC 232 | |||||||| ||| |||| || | |||||| || |||||||||||||| ||||||| Sbjct 174 CTATTTTCAAGAATTT-TTTT-TTAT-AATATC--GATTTTGCCACCCAACTTCTCCCAC 228 Query 233 TCCTTCACAACTGTGTCCTGTCCTCTGCTGatttctcacctttccatcattcatttcatt 292 |||||||| ||||||||||| | | |||| |||||||||| ||||||||||||||| || Sbjct 229 TCCTTCACCACTGTGTCCTG-C-T--GCTGCTTTCTCACCTCTCCATCATTCATTTCTTT 284 Query 293 c-tttcttttttc-cc-atccgtttcttttattcttctttctccttaaatttaaaatctt 349 | ||| ||||||| || ||||||||| |||||||||||||| ||||||||| |||||||| Sbjct 285 CGTTTTTTTTTTCTCCCATCCGTTTCGTTTATTCTTCTTTCCCCTTAAATT-AAAATCTT 343 Query 350 tGAA-TTAAATTATTGGATTTTATTGTTTCAAAGCGTTTCTAT 391 | || |||||||||||||| || ||||||| |||||||||| Sbjct 344 TTAAATTAAATTATTGGATATTGTTGTTTCTCTGCGTTTCTAT 386 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66505567770 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5