BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60620.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475268 jgi|Araly1|475268|fgenesh2_kg.2__398__AT1G60620.1 2085 0.0
Ahg475246 jgi|Araly1|475246|fgenesh2_kg.2__376__AT1G60850.1 977 0.0
> Ahg475268 jgi|Araly1|475268|fgenesh2_kg.2__398__AT1G60620.1
Length=1423
Score = 2085 bits (1129), Expect = 0.0
Identities = 1337/1434 (93%), Gaps = 28/1434 (2%)
Strand=Plus/Plus
Query 15 AAGAACGAAATTGAAGTGAAAAGTGAAATCGTGCAATTTTCATCTTCCTCTTCTCCT-TA 73
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||
Sbjct 1 AAGAACGAAATTGAAGTG-AAAGTGAAATCGTGCAA--TTCATCTTCCTCTTCTCTTATA 57
Query 74 AACCCTGATTTCGGATTCTCACAATCGAACTTGGCTGCAGAGAAGGATGGGGACTAACGA 133
|||||| |||||| ||||||| |||||||||||||| |||||||| |||| |||||| ||
Sbjct 58 AACCCTAATTTCGAATTCTCAGAATCGAACTTGGCTTCAGAGAAGAATGGAGACTAAAGA 117
Query 134 AGTAACAAGGATTGTGACTGATGAAGAAAAG-AGAGAAGCGAAGAACTTCAACATATTTG 192
||||||||| || |||||||||||||||||| | | || ||||| |||||||||||||
Sbjct 118 AGTAACAAGAATCGTGACTGATGAAGAAAAGCA-ATTCGCCAAGAATTTCAACATATTTG 176
Query 193 ATCTCCCTGACGTTCCTACCGGACTTCCTCCGCATCTTGAGCTCCAGCGAACTCGCGTTG 252
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 177 ATCTCCCTGACGTCCCTACCGGACTTCCTCCGCATCTTGAGCTCCAGCGAACTCGCGCTG 236
Query 253 TCTGTAAGAAGGATTCTAATATTCATCCTACG-GCTATCACTTT-CTCGGGTGCCTATTC 310
|||||||||| ||| || ||||||||||||| | | || |||| ||||||||||||| |
Sbjct 237 TCTGTAAGAATGATGCTCCTATTCATCCTACGAG-TGTC-CTTTACTCGGGTGCCTATGC 294
Query 311 CTCTATGGGAGTGGACAACAGTGTGAGACTAGAAAACTTCTCTGAGGATTTCAAAGTTGA 370
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 295 CTCTATGGGAGTGGACAACAGTGTAAGACTAGAAAACTTCTCTGAGGATTTCAAAGTTGA 354
Query 371 TGTGATTAGTCTCACAGAGACAGATATGGTATTCGATATGATCGGTGTCCATGCAGGAAT 430
||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct 355 TGTGACTAGTCTCACAGAGACAGATATGGTTTTCGATATGATTAGTGTCCCTGCAGGAAT 414
Query 431 CGCTAATGCTTTCCGAAGAATCCTCTTAGCTGAGCTTCCTTCAATGGCTATTGAAAAAGT 490
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 415 CGCTAATGCTTTCCGAAGAATCCTCCTAGCTGAGCTTCCTTCAATGGCTATTGAAAAAGT 474
Query 491 GTATGTAGCAAACAACACATCGGTTATTCAAGACGAAGTTCTTGCTCACAGGTTGGGTCT 550
|| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 475 GTTTGTAGCAAACAACACGTCGGTTATACAAGACGAAGTTCTTGCTCACAGGTTGGGTCT 534
Query 551 TATTCCAATTGCCGCAGATCCGAGACTCTTTGAATATTTATCTGAAAACGATCAGCCAAA 610
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 535 TATTCCAATTGCCGCAGATCCGAGCCTTTTTGAATATTTATCCGAAAACGATCAGCCAAA 594
Query 611 TGAAAAGAACACCATTGTTTTCAAACTCCATGTGAAATGTCTAAAAGGTGACCCGCGTCG 670
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 595 TGAAAAGAACACCATTGTTTTCAAACTCCATGTAAAATGTCCAAAAGGTGACCCGCGTCG 654
Query 671 TAAAGTCTTAACAAGCGAATTGAAATGGTTACCAAATGGAAGTGAGCTTATCAAAGAATC 730
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 655 TAAAGTCTTAACAAGCGAATTGAGATGGTTACCAAATGGAAGTGAGCTTCTCAAAGAATC 714
Query 731 TGGAGGTTCAACCACAACGCCAAAAACTTACACTTCATTCAACCATAGCCAAGATTCCTT 790
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 TGGAGGTTCAACCACAAAGCCAAAAACTTACACTTCATTCAGCCATAGCCAAGATTCCTT 774
Query 791 CCCTGAATTTGCTGAAAATCCTATCAGGCCAACCTTAAAAGATATCTTGATAGCAAAACT 850
||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct 775 CCCTGAATTTGCTAAAAATCCTATCACGCCAAGCTTTCAAGATATCTTGATAGCAAAACT 834
Query 851 TGGCCCTGGCCAGGAAATCGAGCTTGAGGCTCATGCCGTTAAGGGCATTGGTAAAACACA 910
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 835 CGGCCCTGGTCAGGAAATCGAGCTTGAAGCTCATGCGGTTAAGGGCATTGGTAAAACACA 894
Query 911 TGCAAAGTGGTCCCCAGTAGCAACGGCTTGGTATCGAATGCTTCCTGAGGTGGTTCTACT 970
|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||
Sbjct 895 TGCAAAGTGGTCCCCAGTTGCAACGGCTTGGTACCGAATGCTTCCTGAGGTGATTCTACT 954
Query 971 AAAGGAATTCGAGGGTAAACATGCCGAAGAACTCGTAAAAGTCTGCCCCAAGAAAGTTTT 1030
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 955 AAAGGAATTCGAGGGTAAACATGCCGAAGAACTCGTAAAAGTATGCCCCAAGAAAGTTTT 1014
Query 1031 TGACATTGAAGACATGGGCCAAGGTAGGAAGAGGGCAACAGTAGCTCGGCCGCGTGATTG 1090
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1015 TGACATTGAAGACATGGGCCAAGGTAGGAAGAGGGCAACGGTAGCTCGGCCGCGTGATTG 1074
Query 1091 TTCGTTGTGTAGAGAATGCATAAGAGATGGAGTGGAATGGGAGGACCAAGTGGATCTGCG 1150
||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||
Sbjct 1075 TTCGTTGTGTAGAGAATGCATAAGAGAAGGAGTGGAATGGGCGAAACAAGTGGATCTGCG 1134
Query 1151 CCGTGTCAAGAACCATTTTATATTTACAATTGAGTCCACGGGATCACAGCCTCCGGAGGT 1210
||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1135 CCGTGTCAAGAACCATTATATATTTACGATTGAGTCCACCGGATCACAGCCTCCGGACGT 1194
Query 1211 TCTTTTCAACGAAGCAGTGAAGATATTGGAAGATAAATGTGAAAGAGTAATCTCTGAACT 1270
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1195 TCTTTTCAACGAAGCAGTGAAGATTTTAGAAGATAAATGTGAAAGAGTAATCTCTGAACT 1254
Query 1271 CTCCTGAAAAGAGATTAAATTGGTTTAGCTCTACCGGCTTGGTTCCGGTTTAGTTCAGTT 1330
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1255 CTCCTGAAAAGAGATTTAATTGGTTTAGCTCTACCTGCTTGGTTCCGGTTTAGTTCAGTT 1314
Query 1331 TT-GGGTTTTGTATCGAAGT---TAATACAAAGAACATTGAAATTTATA-TATACTTGGT 1385
|| ||||||||||||||||| |||||||||||||||||||||||||| | || || |
Sbjct 1315 TTTGGGTTTTGTATCGAAGTCAATAATACAAAGAACATTGAAATTTATACT-TAGTT--T 1371
Query 1386 TTCGGCTCGGTTCAAATTTAGAAT--A---TA-C--ATGTGAACGTTGAAGAGT 1431
| |||||||||||||||| ||||| | || | ||||||||||||||||||
Sbjct 1372 T-CGGCTCGGTTCAAATT-AGAATTTAAAATATCTCATGTGAACGTTGAAGAGT 1423
> Ahg475246 jgi|Araly1|475246|fgenesh2_kg.2__376__AT1G60850.1
Length=1308
Score = 977 bits (529), Expect = 0.0
Identities = 947/1143 (83%), Gaps = 52/1143 (5%)
Strand=Plus/Plus
Query 138 ACAAGGATTGTGACTGATGAAGAAAAG-AGAGAAGCGAAGAACTTCAACATATTTGATCT 196
|||||||| |||||| | | ||||||| | | || ||||||||||||||| |||||
Sbjct 92 ACAAGGATGGTGACTAAAGCAGAAAAGCA-ATTCGCCAAGAACTTCAACATAGACGATCT 150
Query 197 CCCTGACGTTCCTACCGGACTTCCTCCGCATCT-TGAGCTCCAGCGAACTCGCGTTGTCT 255
||||||||| ||||| ||||||||||| ||||| ||| ||||| |||| |||| ||||
Sbjct 151 CCCTGACGTCCCTACTGGACTTCCTCCACATCTCAAAGC-CCAGCAAACTGGCGTCGTCT 209
Query 256 GTAAGAAGGATTCTAATATTCATCCTACG-GCTATCACTTT-CTCGGGT-GCCTA---TT 309
||| || | || | ||||| || || | | || ||| ||| ||| | ||| ||
Sbjct 210 CTAATAACAACGCTCCTCTTCATACTGCGAG-TGCCA-TTTACTCTGGTAG-CTATGTTT 266
Query 310 CCTCTATGGGAGTGGACAACAGTGTGAGACTAGAAAACTTCTCTGAGGATTTCAAAGTTG 369
| ||| ||||||||||| ||||||||| ||||| |||||||| |||| ||||||||||||
Sbjct 267 CTTCTCTGGGAGTGGACGACAGTGTGAAACTAGGAAACTTCTATGAGAATTTCAAAGTTG 326
Query 370 ATGTGATTAGTCTCACAGAGACAGATATGGTATTCGATATGATCGGTGTCCATGCAG-GA 428
|||| |||||||||||| |||| ||||||| |||||||||||| ||| || |||||| |
Sbjct 327 ATGTCATTAGTCTCACAAAGACTGATATGGAATTCGATATGATTGGTATCGATGCAGCG- 385
Query 429 ATCGCTAATGCTTTCCGAAGAATCCTCT-TAGCTGAGCTTCCTTCAATGGCTATTGAAAA 487
| || ||||| |||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 386 TTTGCCAATGCATTCCGAAGGATCCT-TATAGCTGAGCTTCCTTCAATGGCTATTGAAAA 444
Query 488 AG-TGTATGTAGCAAACAACACATCGGTTATTCA-AGACGAAGTTCTTGCTCACAGGTTG 545
|| | || ||||| ||||||||||||||||| | ||| || ||||||||||||||| ||
Sbjct 445 AGTTTTA-ATAGCATACAACACATCGGTTATT-ATAGATGAGGTTCTTGCTCACAGGATG 502
Query 546 GGTCTTATTCCAATTGCCGCAGATCCGAGACTCTTTGAATATTTATCTGAAAACGATCAG 605
|||||||||||||||||||||||||| || || |||||||||||||| ||||| ||||||
Sbjct 503 GGTCTTATTCCAATTGCCGCAGATCCAAGGCTATTTGAATATTTATCCGAAAATGATCAG 562
Query 606 CCAAATGAAAAGAACACCATTGTTTTCAAACTCCATGTGAAATGTCT-AAAAGGT-GACC 663
| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct 563 GCGAATGAAAAGAACACCATTGTTTTCAAACTCCATGTGAAATGTCCGAAAAA-TAGACC 621
Query 664 CGCGTCGTAAAGTCTTAACAAGCGAATTGAAATGGTTACCAAATGGAAGTGAGCTTATCA 723
|||| |||||| ||||| ||||| || |||||||||||||||||||||||| || | |
Sbjct 622 A-CGTCTTAAAGTTTTAACGAGCGATTTAAAATGGTTACCAAATGGAAGTGAGTTTCTTA 680
Query 724 AAGAATCTGGAGGTTCAACCACAACGCCAAAAACTTACACTTCATTCAACCATAGCCAAG 783
|||||| |||||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 681 GAGAATCGGGAGGTTCAACCTCAAAGCCAAAAACTTACACTTCATTCAGTTGCAGCCAAG 740
Query 784 ATTCCTT-CCCTGAATTTGCTGAA-AATCCTATCAGGCCAACCTTAAAA-GATATCTTGA 840
||||||| ||| ||||||||| || |||||||||| || | | ||||||||||
Sbjct 741 ATTCCTTACCC-GAATTTGCT-AATAATCCTATCACTCCGTGCG-ACCTCGATATCTTGA 797
Query 841 TAGCAAAACTTGGCCCTGGCCAGGAAATCGAGCTTGAGGCTCATGCCGTTAAGGGCATTG 900
|||||||||| | |||||| ||||||||||| || || |||||||| |||||||||||||
Sbjct 798 TAGCAAAACTCGCCCCTGGTCAGGAAATCGAACTCGAAGCTCATGCGGTTAAGGGCATTG 857
Query 901 GTAAAACACATGCAAAGTGGTCCCCAGTAGCAACGGCTTGGTATCGAATGCTTCCTGAGG 960
|||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||
Sbjct 858 GTAAAACACATGCAAAGTGGTCCCCAGTAGGGACTGCTTGGTATAGAATGCATCCTGAGG 917
Query 961 TGGTTCTAC-TAAAGGAA-TTCGAGGGTAAACATGCCGAA-GAACTCGTAAAAGTCTGCC 1017
||||||||| | |||| || |||| | | | ||| ||| || || |||||||||||||
Sbjct 918 TGGTTCTACGTGG-GGAAGTT-GAGGATGAGCTTGCTGAACGA-CTTGTAAAAGTCTGCC 974
Query 1018 C-CAAGAAAGTTTTTGACATTGAAGACATGGGCCAAGGTAGGAAGAGGGCAACAGTAGCT 1076
| || ||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 975 CACA-GAATGTTTTCGACATTGAAGACATGGGAAAAGGTAGGAAAAGGGCAACAGTAGCG 1033
Query 1077 CGGCCGCGTGATTGTTCGTTGTGT-AGAGAATGCATAAGAGATGGAGTGGAATGGG-AGG 1134
| ||| ||| | || |||||||| || |||||| ||||||| | | || | | || ||
Sbjct 1034 CAGCCACGTAAGTGCACGTTGTGTCAG-GAATGCGTAAGAGACG-A-TG-ATTTGGTAGA 1089
Query 1135 ACCAAGTGGATCT-GCGCCGTGTCAAGAACCATTTTATATTTA-CAATTGAGTCCACGGG 1192
|| || ||||| | || |||||| ||||||||||||||||| || | |||||||| ||
Sbjct 1090 ACGT-GTTGATCTTG-GCAGTGTCAGGAACCATTTTATATTTAACA-TCGAGTCCACCGG 1146
Query 1193 ATCACAGCCTCCGGAGGTTCTTTTCAAC-GAAGCAGTGAAGATATTGGAAGATAAATGTG 1251
||||| |||||||| ||||| |||| | ||||| |||||||||||||||| ||||||||
Sbjct 1147 ATCACTTCCTCCGGACGTTCTCTTCA-CTGAAGCTGTGAAGATATTGGAAGCTAAATGTG 1205
Query 1252 AAA 1254
|||
Sbjct 1206 AAA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5