BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60630.1
Length=2174
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924991 jgi|Araly1|924991|scaffold_200552.1 2968 0.0
> Ahg924991 jgi|Araly1|924991|scaffold_200552.1
Length=1967
Score = 2968 bits (1607), Expect = 0.0
Identities = 1856/1976 (94%), Gaps = 18/1976 (1%)
Strand=Plus/Plus
Query 136 tcttcttgtatgttcttcttggtgtttgctttctttttgatttctCCGGTGAGATCAAG- 194
||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||
Sbjct 1 TCTTCTTGTATGTTCTTCTTGATGTTTGCTTTCTTTTTTATTTCTCTGGTGAGATC-AGA 59
Query 195 CGATGTTGAAGCTCTACTGAGTTTGAAATCATCCATTGATCCTTCAAATTCGATTCCATG 254
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 CGATGTAGAAGCTCTACTGAGTTTGAAATCATCCATTGATCCTTCAAACTCGATTCCATG 119
Query 255 GCGAGGAACAGATCCTTGCAACTGGGAAGGAGTCAAGAAATGCATGAAAGGAAGAGTCTC 314
|||||||||||||| |||||||||||||||||| |||||||| || || |||||||||||
Sbjct 120 GCGAGGAACAGATCTTTGCAACTGGGAAGGAGTTAAGAAATGTATCAATGGAAGAGTCTC 179
Query 315 AAAGCTTGTTCTTGAGAATTTGAACCTCAGTGGCTCACTCAACGGCAAGAGTTTGAACCA 374
||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||
Sbjct 180 AAAGCTTGTTCTTGAGAATCTGAACCTCACTGGCTCACTCAACAACAAGAGCTTGAACCA 239
Query 375 ATTGGATCAACTTAGAGTTCTTAGTTTCAAAGGAAACTCTCTCTCTGGCTCAATCCCTAA 434
|||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 240 ATTGGATCAACTTAGAGTACTTAGTTTCAAAGGCAACTCTCTCTTTGGCTCAATCCCTAA 299
Query 435 CCTAT-CTGGTTTAGTCAACCTCAAATCTCTTTATCTCAACGATAATAACTTCTCCGGTG 493
||| | || |||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 CCTCTCCT-GTTTGGTTAACCTCAAATCTCTTTATCTCAATGATAATAACTTCTCCGGTG 358
Query 494 AGTTCCCTGAATCACTGACGTCTCTACACCGATTGAAAACGGTTGTTCTTTCCAGG-AAT 552
|||| ||||||||||| |||||||| |||||||||||||| |||||||||||| || |||
Sbjct 359 AGTTTCCTGAATCACTCACGTCTCTGCACCGATTGAAAACCGTTGTTCTTTCC-GGAAAT 417
Query 553 CGGTTTTCCGGCAAGATTCCTAGCTCGTTGCTCCGACTCTCCCGCCTTTACACGTTTTAC 612
|||||||| || ||||| |||| |||||||||||| || ||||||||||||| | |||||
Sbjct 418 CGGTTTTCGGGAAAGATCCCTACCTCGTTGCTCCGTCTTTCCCGCCTTTACATGCTTTAC 477
Query 613 GTTCAAGACAATCTCTTCTCTGGTTCCATTCCTCCTCTCAACCAAGCAACTCTCAGATTC 672
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 GTTGAAGACAATCTCTTCTCTGGTTCCATTCCTCCTCTTAACCAAGCAACTCTCAGATTC 537
Query 673 TTTAATGTCTCGAATAATCAACTCTCTGGTCATATCCCACCAACACAAGCTCTGAATCGG 732
||||||||||| |||||||| |||||||| |||||||||| ||||||||| ||||||||
Sbjct 538 TTTAATGTCTCAAATAATCAGCTCTCTGGCCATATCCCACTTACACAAGCTTTGAATCGG 597
Query 733 TTCAATGAGTCGTCGTTTA-CTGACAACATTGCTCTCTGCGGTGATCAGATTCAAAACTC 791
||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 598 TTCAATGAGTCGTCGTTTACCAG-TAACATTGCTCTCTGCGGTGATCAGATTCAAAACTC 656
Query 792 ATGCAATGACACCACTGGAATCACTTCAACTCCATCAGCAAAACCAGCTA-TCCCTGTAG 850
||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 657 ATGCAATGACACCACCGGAATCACTTCAACTCCATCAGCAAAACCAGCAATTCCC-GTAG 715
Query 851 CCAAAACACGTAGCAGAACGAAGCTCATCGGAATCATTTCCGGAAGCATTTGTGGCGGAA 910
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCAAAACGCGTAACAGAAAAAAGCTCATCGGAATCATTTCCGGAAGCATTTGTGGCGGAA 775
Query 911 TAT-TGATACTTCTGCTGACATTTCTTCTCATATGTCTT-CTTTGGAGACGGAAGCGAAG 968
| | |||||||| |||||||||| |||||||||||| || |||||||||||||| ||||
Sbjct 776 T-TGTGATACTTTTGCTGACATTGCTTCTCATATGT-TTGCTTTGGAGACGGAAACGAAT 833
Query 969 CAAATCCAAAAGAGAAGAGAGGAGAAGCAAACG-CGTGGCAGAGTCAAAAGAAGCAAAGA 1027
||||||||| ||||||||||||||||||||| | ||||||||||||| ||| ||||||||
Sbjct 834 CAAATCCAAGAGAGAAGAGAGGAGAAGCAAA-GCCGTGGCAGAGTCAGAAGGAGCAAAGA 892
Query 1028 CGGCTGAAACAGAGGAAGGTA-CGAGTGACCAGAAAAACAAAAGGTTCTCTTGGGAGAAA 1086
||||||||||||||||||||| | | |||| ||||||||||||||||||| |||||||||
Sbjct 893 CGGCTGAAACAGAGGAAGGTATC-AATGACGAGAAAAACAAAAGGTTCTCATGGGAGAAA 951
Query 1087 GAAAGCGAAGAAGGATCAGTAGGGACTCTGGTTTTCTTGGGAAGAGACATCACGGTGGTG 1146
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 952 GAAAGTGAAGAAGGATCAGTGGGGACTCTGGTTTTCTTGGGAAGAGACATCACGGTGATG 1011
Query 1147 AGATACACCATGGATGATCTACTCAAAGCTTCAGCAGAAACGTTGGGAAGAGGAACGTTA 1206
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1012 AAATACACCATGGATGATCTACTCAAAGCTTCAGCGGAAACGTTGGGAAGAGGAACGTTA 1071
Query 1207 GGGAGCACTTACAAGGCAGTGATGGAGTCTGGATTCATCATCACTGTTAAGAGGCTCAAG 1266
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1072 GGGAGCACTTACAAGGCGGTGATGGAGTCTGGATTCATCATCACTGTTAAGAGGCTTAAA 1131
Query 1267 GACGCAGGGTTTCCTCGAATGGATGAATTCAAGAGACATATTGAGATCCTTGGCAGACTC 1326
||| | |||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1132 GACACGGGGTTTCCTCGAATGGATGAATTCAAGAGACACATTGAGATCCTTGGAAGGCTC 1191
Query 1327 AAGCACCCTAATCTGGTGCCACTCAGAGCTTATTTCCAAGCCAAAGAAGAATGCTTGCTC 1386
| |||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1192 ACGCACCCTAATCTTGTGCCTCTCAGAGCTTATTTCCAAGCCAAAGAAGAGTGTTTGCTC 1251
Query 1387 GTCTACGATTACTTCCCCAATGGAAGTCTCTTCTCTCTTATCCATGGAAGTAAGGTCTCT 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1252 GTCTACGATTACTTCCCCAATGGAAGTCTCTTCTCTCTTATCCATGGAAGTAAAGTTTCC 1311
Query 1447 GGGAGTGGGAAGCCTCTTCACTGGACATCATGTTTGAAAATAGCAGAGGACTTGGCAATG 1506
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1312 GGGAGTGGGAAGCCTCTTCACTGGACATCATGTCTGAAAATAGCAGAGGACTTGGCAATG 1371
Query 1507 GGTCTGGTCTACATTCATCAGAATCCTGGCTTAACGCATGGGAACTTGAAATCATCTAAT 1566
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1372 GGCCTGGTCTACATTCATCAGAATCCTGGCTTAACGCATGGGAACTTGAAATCCTCCAAT 1431
Query 1567 GTTTTGTTAGGTCCGGACTTCGAGTCCTGTCTCACGGACTACGGTCTCAGCGATCTCCAT 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GTTTTGTTAGGTCCGGACTTCGAGTCCTGTCTCACGGACTACGGTCTCAGCGATCTCCAT 1491
Query 1627 GATCCTTACTCGATTGAAGACACAAGTGCAGCTTCTCTCTTTTACAAAGCTCCTGAATGC 1686
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1492 GATCCTTACTCGATTGAAGACACAAGTGCAGCCTCCCTCTTTTACAAAGCTCCTGAATGC 1551
Query 1687 AGAGACTTACGCAAGGCTTCAACACAACCAGCTGATGTTTATAGCTTTGGAGTCCTCCTT 1746
||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1552 AGAGACTTACGGAAAGCCTCAACACAACCCGCTGATGTTTATAGCTTTGGAGTCCTCCTT 1611
Query 1747 CTAGAGCTTCTAACAGGTAGAACTTCATTCAAGGACCTTGTTCATAAATACGGGTCTGAT 1806
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1612 CTAGAGCTTCTAACAGGTAGAACTTCATTCAAGGACCTTGTTCATAAAAACGGGTCAGAT 1671
Query 1807 ATCTCCACATGGGTGCGTGCGGTGAGAGAGGAAGAGACTGAAGTAAGTGAGGAGCTGAAT 1866
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 1672 ATCTCCACATGGGTGCGTGCGGTGAGAGAGGAAGAGACTGAATTAAGTGAGGAGATGAGT 1731
Query 1867 GCTTCTGAGGAGAAACTTCAAGCTCTTTTGACCATCGCGACAGCTTGCGTGGCTGTTAAG 1926
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1732 CCTTCTGAGGAGAAACTTCAGGCTCTTTTGAGCATCGCGACAGCTTGCGTGGCTGTTAAG 1791
Query 1927 CCGGAAAACCGTCCTGCGATGAGAGAGGTATTGAAGATGGTGAAAGATGCAAGGGCTGAA 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CCGGAAAACCGTCCTGCGATGAGAGAGGTATTGAAGATGGTGAAAGATGCAAGGGCTGAA 1851
Query 1987 GCAGCTCTTTTCTCATTTAACAGCAGTGATCATTCGCCTGGGAGATGGTCGGATACGATT 2046
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GCAGCTCTGTTCTCATTTAACAGCAGTGATCATTCGCCTGGGAGATGGTCGGATACGATT 1911
Query 2047 CAGAGCTTGCCAAGGGAGGATCATATGAGCATCTGATTCAAGTTGTTGTAGCTTTC 2102
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1912 CAGAGCTTGCCAAGGGAGGATCATATGAGCATCTGATTCAAGTTGTTGCAGCCTTC 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81817846260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5