BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60640.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907402 jgi|Araly1|907402|Al_scaffold_0002_483 1432 0.0
> Ahg907402 jgi|Araly1|907402|Al_scaffold_0002_483
Length=1014
Score = 1432 bits (775), Expect = 0.0
Identities = 950/1031 (92%), Gaps = 25/1031 (2%)
Strand=Plus/Plus
Query 55 ATGATAAAGAGACGATTTTACAAGCTTGAGCATGGTGATAAAGACAGTGGATCCGATTCA 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATAAAGAGACGATTTTACAAGCTTGAGCATGGTGATAAAGACAGTGGATCCGATTCA 60
Query 115 TCGTGCTTCTCTTCTGACTCTGATCCTGAGACGGAAGAATCAGAACAATCTGAAGAAGAA 174
|| || ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 61 TCTTGTTTCTCTTCTGATTCTGATCCTGAGACCGAAGAATCAGAAGAATCTGAAGAAGAA 120
Query 175 GACTCTGTTGCAGAAGTTTCCGAGGACGGTGATGATTCAGGAGATGATGAATCCCCAGCT 234
||||||||||||||||||| | ||| || |||||||||||||||||||
Sbjct 121 GACTCTGTTGCAGAAGTTT-------C-----TGA---AGAAGATGATGAATCCCCAGCT 165
Query 235 GCTGGCGAAGACGCTGATG-T--TGA---TGATGGTGATGATAACTCTGATGCTGATGAC 288
|||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 166 GCTGACGAAGACGCTGATGTTGATGATGGTGATGGTGATGATAACTCTGATGCTGATGAC 225
Query 289 TATGGTGGGACATTGGAGAAGATGTCAATGAATCGTTTTTTAGAAGAACCACCCGAAGAA 348
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 226 TATGGTGGGACATTGGAGAAGATGTCAATGAATCGTTATTTAGAAGAACCACCGGAAGAG 285
Query 349 GAGGAAGAGAACTATATTCTCGGTTGTATGATACAATCCAAATCGGTTTATAAATGCAGA 408
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 286 GAGGAAGAGAACTATATTCTAGGTTGTATGATACAATCCAAATCGGTTTATAAATGCAGA 345
Query 409 TATTGTCCAACCGTTGTTTGCTTGAATGAGAACACAATGCAAGCACATGTTTCATCAAAG 468
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TATTGCCCAACAGTTGTTTGCTTGAATGAGAACACAATGCAAGCACATGTTTCATCAAAG 405
Query 469 AAGCATGCTCGTATGGAGAAATTAGTGAAAGAAGGAAAGATTAGAACTGATGACGAAGAA 528
|||||||| |||||||||||||||||||||||||||||| | ||||| ||||| ||||||
Sbjct 406 AAGCATGCCCGTATGGAGAAATTAGTGAAAGAAGGAAAGGTCAGAACCGATGATGAAGAA 465
Query 529 GTTGACGATCTAGAGACAGCATCTCaggagaaggagaaaaaaggaaacagaagatcacaa 588
|||| |||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 466 TTTGATGATCCAGAGACAGCATCTCAGGAGAAGCAGACTAAAGGAAACAGAAGATCACAA 525
Query 589 agacagggaaagagatctcaaaaacaggaaaaggaTTCATTGACCAAAAATGGAGAAAAC 648
||||||||||||||||| ||||||| |||||||| |||| |||||| ||| |||||||
Sbjct 526 AGACAGGGAAAGAGATCCCAAAAACCGGAAAAGGGCTCATCAACCAAACATGAAGAAAAC 585
Query 649 GAAGAAGTTGAAGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGGAAACAGAAGA 708
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GATGAAGTTGACGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGGAAACAGAAGA 645
Query 709 GCTCGGAGAGAGCTTAGGAGATCACAAAAACAGGAAAAGGATTCATCGACCAAACATGGA 768
|||| ||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 646 GCTCAAAGAGAGCATAAGAGATCACAAAAACAGGAAAAGGGTTCATCGACCAAACATGGA 705
Query 769 GAAAACGAAGAGGTTGACAATTCAGGGACGCCATCTCAGGGGAAGCAGATAAAAGAAAAC 828
||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 706 GAAAAGGAAGAGGTTGACAATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGAAAAC 765
Query 829 AGTAGAGCACGAAGACAGCGTAAGAGATTAGAAAAACAGGGAAAGGGTTCATTAACCAAA 888
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 766 AGTAGAGCACGAAGACAGCGTAAAAGATTAGAAAAACAGGGAAAGGGTTCAATAACCAAA 825
Query 889 CATGGAGAAAACGAAGAAGTTGACA-ATCCAGAGACACCATCACAGGAGAAGCAGATAAA 947
||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 826 CATGGAGAAAACGAAGAAGTTGA-AGATCCAGAGATGCCATCACAGGAGAAGCAGATAAA 884
Query 948 AGGAAACAGTAGCTCACGAAGACAGCTTAAGAGATCAGAAAAACAGGAAAAGA-TTCCAT 1006
|||||||||||| |||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct 885 AGGAAACAGTAGATCACAAAAACAGCTTAAGAGATCAGAAAAACAGGAAAAGAGTTC-AT 943
Query 1007 CGACTAAGGAAGGAGAAAACGAAGATGCATCACAAAAATCTAGAAAGAAAAGGCGTCAAA 1066
||| |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||
Sbjct 944 TGACCAAGGAAGGAGAAAACGAAGATGCATCGCAAAAGTTTAGAAAGAAAAGACGTCAAA 1003
Query 1067 CTAAGGATTGA 1077
|||||||||||
Sbjct 1004 CTAAGGATTGA 1014
Score = 407 bits (220), Expect = 1e-112
Identities = 335/390 (86%), Gaps = 10/390 (3%)
Strand=Plus/Plus
Query 521 ACGAAGAAGTTGACGATCTAGAGACAG-CATCTCaggagaaggagaaaaaaggaaacaga 579
|||| ||||||||||||| |||||| | |||||||||||||| ||| |||||||||||||
Sbjct 584 ACGATGAAGTTGACGATCCAGAGAC-GCCATCTCAGGAGAAGCAGATAAAAGGAAACAGA 642
Query 580 agatcacaaagacaggga-aagagatctcaaaaacaggaaaaggaTTCATTGACCAAAAA 638
||| | |||||| | | | |||||||| |||||||||||||||| ||||| ||||||| |
Sbjct 643 AGAGCTCAAAGAGA-GCATAAGAGATCACAAAAACAGGAAAAGGGTTCATCGACCAAACA 701
Query 639 TGGAGAAAACGAAGAAGTTGA-AGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAG 697
||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 702 TGGAGAAAAGGAAGAGGTTGACA-ATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAG 760
Query 698 GAAACAGAAGAGCTCGGAGAGAGCTTAGGAGATCACAAAAACAGGAAAAGGATTCA-TCG 756
|||||| ||||| || ||| ||| || |||| | ||||||||| ||||| |||| |
Sbjct 761 AAAACAGTAGAGCACGAAGACAGCGTAAAAGATTAGAAAAACAGGGAAAGGGTTCAATA- 819
Query 757 ACCAAACATGGAGAAAACGAAGAGGTTGACA-ATTCAGGGACGCCATCTCAGGGGAAGCA 815
||||||||||||||||||||||| ||||| | || ||| || |||||| |||| ||||||
Sbjct 820 ACCAAACATGGAGAAAACGAAGAAGTTGA-AGATCCAGAGATGCCATCACAGGAGAAGCA 878
Query 816 GATAAAAGAAAACAGTAGAGCACGAAGACAGCGTAAGAGATTAGAAAAACAGGGAAAGGG 875
|||||||| |||||||||| ||| || ||||| |||||||| ||||||||||| |||| |
Sbjct 879 GATAAAAGGAAACAGTAGATCACAAAAACAGCTTAAGAGATCAGAAAAACAGGAAAAGAG 938
Query 876 TTCATTAACCAAACATGGAGAAAACGAAGA 905
|||||| ||||| | ||||||||||||||
Sbjct 939 TTCATTGACCAAGGAAGGAGAAAACGAAGA 968
Score = 259 bits (140), Expect = 3e-68
Identities = 222/261 (85%), Gaps = 8/261 (3%)
Strand=Plus/Plus
Query 523 GAAGAAGTTGACGATCTAGAGACAG-CATCTCaggagaaggagaaaaaaggaaacagaag 581
||||| |||||| ||| |||||| | |||||||||||||| ||| ||||| |||||| ||
Sbjct 712 GAAGAGGTTGACAATCCAGAGAC-GCCATCTCAGGAGAAGCAGATAAAAGAAAACAGTAG 770
Query 582 atcacaaagacag-ggaaagagatct-caaaaacaggaaaaggaTTCATTGACCAAAAAT 639
| ||| ||||||| | ||| |||| | ||||||||| ||||| |||| | |||||| ||
Sbjct 771 AGCACGAAGACAGCGTAAA-AGAT-TAGAAAAACAGGGAAAGGGTTCAATAACCAAACAT 828
Query 640 GGAGAAAACGAAGAAGTTGAAGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGGA 699
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 829 GGAGAAAACGAAGAAGTTGAAGATCCAGAGATGCCATCACAGGAGAAGCAGATAAAAGGA 888
Query 700 AACAGAAGAGCTCGGAGAGAGCTTAGGAGATCACAAAAACAGGAAAAG-GATTCATCGAC 758
||||| ||| | | | | |||||| ||||||| |||||||||||||| | ||||| |||
Sbjct 889 AACAGTAGATCACAAAAACAGCTTAAGAGATCAGAAAAACAGGAAAAGAG-TTCATTGAC 947
Query 759 CAAACATGGAGAAAACGAAGA 779
||| | ||||||||||||||
Sbjct 948 CAAGGAAGGAGAAAACGAAGA 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5