BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60650.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315285 jgi|Araly1|315285|fgenesh1_pm.C_scaffold_2000318 1236 0.0
> Ahg315285 jgi|Araly1|315285|fgenesh1_pm.C_scaffold_2000318
Length=861
Score = 1236 bits (669), Expect = 0.0
Identities = 814/881 (92%), Gaps = 22/881 (2%)
Strand=Plus/Plus
Query 87 ATGAAAGATAGAGAAAACGATGGAAATCTTGAGAGCAGAATCTTCGTGGGAGGGTTATCG 146
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1 ATGAAAGATAGAGAAAACGATGGAAATCTTGAGAGCAGAATCTTCGTTGGAGGATTGTCG 60
Query 147 TGGGATGTCACAGAGAGACAGCTTGAGAGTACCTTTGACCGCTACGGGAAAATCACTGAG 206
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 TGGGATGTCACAGAGAGACAGCTTGAGAGTACTTTTGACCGCTATGGGAAAATCACTGAG 120
Query 207 TGTCAGATTATGGTGGGGAGAGATACTGGGCGTCCACGTGGTTTTGGGTTTATTACATTC 266
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TGTCAGATTATGGTGGGGAAAGATACTGGCCGTCCACGTGGTTTTGGGTTTATTACATTC 180
Query 267 ACTGATCGCAGAGGAGCTGATGATGCAATTAAGCACATGCATGGAAGGGAGTTGGGCAAT 326
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 181 ACTGATCGCCGAGGAGCTGATGATGCAATTAAGCACATGCATGGGAGGGAGTTGGGCGAT 240
Query 327 AAGGTCATCTCCGTGAACAAAGCTGAGCCCAAAGTTGGTGGAGAAGATGTAGACCAATTA 386
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 241 AGGGTCATCTCGGTGAACAAAGCTGAGCCCAAAGTTGGTGGAGATGATGTAGACCATTTA 300
Query 387 AAGAAAGGTGGAGGCTATTCATCTCGAGGGAAGGGAACCGAGGATGAGTGCTTTAAATGC 446
| || ||||||||||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 301 CATAAGGGTGGAGGCTACTCATCTCGAGGGAAGGGAAGCGAGGATGAGTGCTTTAAGTGC 360
Query 447 AGACGCCCTGGTCATTGGGCTCGAGATTGCCCATCAACTGGT-GACGATCGAGAACGGTT 505
||||||||||||||||||||||||||||||||||| ||||| | ||| ||| ||||||
Sbjct 361 GGACGCCCTGGTCATTGGGCTCGAGATTGCCCATCAGCTGGTAG-CGAAGGAGGACGGTT 419
Query 506 CAGAGTTCCCCTTGCGATGCGCTCTCGTA-TTGGAGACATAGATGGACACCGAGATCGCT 564
||||||| ||||||||||||||||| | | ||||||| || |||||||||||||||||||
Sbjct 420 CAGAGTTTCCCTTGCGATGCGCTCTAG-ACTTGGAGAAATCGATGGACACCGAGATCGCT 478
Query 565 ATGGAGATCGTGATCTGGAGAGGGAGCGGGAGCGGGAGCGTGAGTTTGACCGCTACATGG 624
||||||||||||| |||||| || ||||| ||| |||||||||||
Sbjct 479 ATGGAGATCGTGAGCTGGAG------CGTGAGCG------TGA------CCGCTACATGG 520
Query 625 ATGGACGCCGTGACCGAGATGGGGGACGATATAGCTACAGGGACCGCTTCGACAGTGGAG 684
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 521 ATGGACGCCGTGACCGAGATGGGGGACGATATAGCTACAGGGACCGCTTTGAGAGTGGAG 580
Query 685 ACAAGTATGAGCCTCGTGATCACTATCCATTTGAGAGATACGCACCACCAGGAGACCGTT 744
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 581 ACAAGTATGAGACTCGTGATCACTATCCATTTGAGAGATACGCACCACCTGGAGACCGTT 640
Query 745 TTGTGAGTGATAGGTATGGGATGCCTGAACATCATCTTGAGAATGAATATCGCGGGAGAG 804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 641 TTGTGAGTGATAGGTATGGGATGCCTGAACATCATCTTGAGAATGAATATCGCGGGCGAG 700
Query 805 AGAGAAGCTATGACAGGGACAGATACGCAAGGGATACAAGTGACAGATATGGAGATATGG 864
||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 701 AGAGAAGCTATGACAGGGACAGATACGCAAGGGATACAAGTGATAGGTATGGAGCTATGG 760
Query 865 GACCGATACGCGATGAGGGAAGACCCTACAGAAGCAGACCAGGTCCTTATGACCGTCCTA 924
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 761 GACCGATACGTGATGAGGGAAGACCCTATAGAAGCAGACCAGGTCCTTATGACCGTCCTA 820
Query 925 GCCGTCCTGGAGGCAGACCTTCATCATATGAACGTTGGTAG 965
|||| |||||||| ||||||| ||||||||||||||||||
Sbjct 821 GCCGAGCTGGAGGCCGACCTTCGTCATATGAACGTTGGTAG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5