BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G60660.1

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924988 jgi|Araly1|924988|scaffold_200549.1                        562    1e-159


> Ahg924988 jgi|Araly1|924988|scaffold_200549.1
Length=409

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 360/386 (93%), Gaps = 8/386 (2%)
 Strand=Plus/Plus

Query  45   TTCCAAGGAGAGAAAGATGATAGCTGTGATCGGATTGCTTCTGGGTTTTCTAGTATCAGC  104
            ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  6    TTCCAAGTACAGAAAGATGATAGCTGTGATCGGATTGCTTCTGGGTTTTCTAGTTTCAGC  65

Query  105  ATTGTTCTTAATCCAAGGAAAGCGAAGAAGAACAAACGACAATCAAGAGAAGAAGAGATC  164
            |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct  66   ATTGTTCTTAATCCAAGGCAAGCGAAGAAGATCAAACGACAATCAAGAGAAGAAGAGGTC  125

Query  165  TAGCAGTGAGCCTGTAGAAGATGTGGTAAGACCAAAAAGTTACAGCAAGAGTGAAGTCGC  224
            ||| |  ||||||||   |||   ||||||||||||||||||||||||||||||||||||
Sbjct  126  TAGTAACGAGCCTGT---AGA---GGTAAGACCAAAAAGTTACAGCAAGAGTGAAGTCGC  179

Query  225  AGTACATAACAAAAGGAACGATTGTTGGATCATAATCAAAGATAAAGTCTATGATATTAC  284
            |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct  180  AGTACATAACAAAAGGAACGATTGTTGGGTCATAATCAAAGATAGAGTCTATGATGTTAC  239

Query  285  TTCTTATGTTGAAGAACATCCTGGTGGTGACGCTATTCTTGATCATGCTGGTGATGATTC  344
            ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct  240  TTCTTATGTTGAAGAACATCCTGGTGGCGACGCCATTCTAGATCATGCTGGTGATGATTC  299

Query  345  TACTGATGGCTTCTTCGGACCTCAACACGCCACTCGTGTTTTCGACATGATTGAAGATTT  404
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  300  TACTGATGGCTTCTTCGGACCACAACACGCCACTCGTGTTTTCGACATGATTGAGGATTT  359

Query  405  CTACATCGGGGAACTTCATTA-GTAA  429
            ||||||||| ||||||| ||| ||||
Sbjct  360  CTACATCGGAGAACTTC-TTAAGTAA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22015774853


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5