BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60660.1 Length=601 Score E Sequences producing significant alignments: (Bits) Value Ahg924988 jgi|Araly1|924988|scaffold_200549.1 562 1e-159 > Ahg924988 jgi|Araly1|924988|scaffold_200549.1 Length=409 Score = 562 bits (304), Expect = 1e-159 Identities = 360/386 (93%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 45 TTCCAAGGAGAGAAAGATGATAGCTGTGATCGGATTGCTTCTGGGTTTTCTAGTATCAGC 104 ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 6 TTCCAAGTACAGAAAGATGATAGCTGTGATCGGATTGCTTCTGGGTTTTCTAGTTTCAGC 65 Query 105 ATTGTTCTTAATCCAAGGAAAGCGAAGAAGAACAAACGACAATCAAGAGAAGAAGAGATC 164 |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || Sbjct 66 ATTGTTCTTAATCCAAGGCAAGCGAAGAAGATCAAACGACAATCAAGAGAAGAAGAGGTC 125 Query 165 TAGCAGTGAGCCTGTAGAAGATGTGGTAAGACCAAAAAGTTACAGCAAGAGTGAAGTCGC 224 ||| | |||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 126 TAGTAACGAGCCTGT---AGA---GGTAAGACCAAAAAGTTACAGCAAGAGTGAAGTCGC 179 Query 225 AGTACATAACAAAAGGAACGATTGTTGGATCATAATCAAAGATAAAGTCTATGATATTAC 284 |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| Sbjct 180 AGTACATAACAAAAGGAACGATTGTTGGGTCATAATCAAAGATAGAGTCTATGATGTTAC 239 Query 285 TTCTTATGTTGAAGAACATCCTGGTGGTGACGCTATTCTTGATCATGCTGGTGATGATTC 344 ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 240 TTCTTATGTTGAAGAACATCCTGGTGGCGACGCCATTCTAGATCATGCTGGTGATGATTC 299 Query 345 TACTGATGGCTTCTTCGGACCTCAACACGCCACTCGTGTTTTCGACATGATTGAAGATTT 404 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 300 TACTGATGGCTTCTTCGGACCACAACACGCCACTCGTGTTTTCGACATGATTGAGGATTT 359 Query 405 CTACATCGGGGAACTTCATTA-GTAA 429 ||||||||| ||||||| ||| |||| Sbjct 360 CTACATCGGAGAACTTC-TTAAGTAA 384 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22015774853 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5