BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60670.2
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924987 jgi|Araly1|924987|scaffold_200548.1 1319 0.0
> Ahg924987 jgi|Araly1|924987|scaffold_200548.1
Length=805
Score = 1319 bits (714), Expect = 0.0
Identities = 768/795 (97%), Gaps = 0/795 (0%)
Strand=Plus/Plus
Query 311 CTTTTGAGTGATGATTCCGATGGATAATTATTGCGTACCGAGTACTAGCACGACCGGTTT 370
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 11 CTTTCGAGTGATGATTCCGATGGATAATTATTGCGTACCGAGCACTAGCACGACCGGTTT 70
Query 371 AGTGTTTTCGGCGACTTCGAGCATGAATGCTTCTTCTGGATTTCATCTTACTGTAAATTC 430
||| |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 71 AGTATTTTCGGCGAATTCGAGCATGAATGCTTCCTCTGGATTTCACCTTACTGTAAATTC 130
Query 431 TCCGACTTCGGTTACTGGACTCAAACATGAAGCTTCTTTGGCTGTTGATTGGTCTGTTGA 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TCCGACTTCGGTTACTGGACTCAAACATGAAGCTTCTTTGGCTGTTGATTGGTCTGTTGA 190
Query 491 GGAACAATATATATTGGAGAAAGGTCTTTCAAAATTTAAAGATGAACCACAAGTTACAAA 550
|||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 191 GGAACAGTATGTATTGGAGAAAGGTCTTGCAAAATTTAAAGATGAACCACAAGTTACGAA 250
Query 551 GTATGTAAAGATCGCAGCAACTCTACCAGATAAAAGTGTACGGGATGTAGCAATGAGATG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GTATGTAAAGATCGCAGCAACTCTACCAGATAAAAGTGTACGGGATGTAGCAATGAGATG 310
Query 611 TAAATGGATGACGCAAAAGCGAAGAAAAGGGGAAGAACATAGTACTGGCACGAAGGTTAG 670
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TAAATGGATGACGCAAAAACGAAGAAAAGGGGAAGAACATAGTACTGGCACGAAGGTTAG 370
Query 671 TTATAGAAAGGTAGTGGATTTACCCCCAAAACTGAACATGTTCTCAACTGAGCCACAACA 730
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 371 TTATAGAAAGGTGGTGGATTTACCCCCAAAACTGAACATGTTCTCAACTTTGCCACAACA 430
Query 731 AAATGCTACATATGCCATGAACCATATGTGCCAGAGTGCACGCATGCCTTTTGAAGGTCT 790
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AAATGCTACATATGCCATAAACCATATGTGCCAGAGTGCACGCATGCCTTTTGAAGGTCT 490
Query 791 AAGTGATGCGGTTATGGAGCGTCTACGGCAGAATGCTCAAGCTTTCAGTCAAATCTCCTC 850
||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||
Sbjct 491 AAGTGATGCGGTTATGGAGCGTCTAAGGCAGAATGCTCAAGCTTTCAGCCAAATTTCTTC 550
Query 851 AAACCTTTCTGTGTGCAAGCCACAGGATAACGTCAGTCTGTTTTATATGGCAAGAAATAA 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AAACCTTTCTGTGTGCAAGCCACAGGATAACGTCAGTCTGTTTTATATGGCAAGAAATAA 610
Query 911 CATCAGTGCCATCTTGAATGACATGAAGGAGATGCCTGGGATCATCAGCCGGATGCCGCC 970
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 611 CATCAGTGCCATCTTGAATGACATGAAGGAGATGCCTGGTATCATCAGCCGGATGCCGCC 670
Query 971 TCTGCCTGTCTCAATTAACAATGATCTTGCAAGCAGTTTAGTGACAAGTGCCACACAGCC 1030
|||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||
Sbjct 671 TCTGCCTGTCTCAATTAACAATGATCTTGCAAGCAGTTTAATGACGAGTACAACACAGCC 730
Query 1031 GAGATCTTATACCATTCCCTCGAGCATCTATCTGAAGCAGGAGCCAAGAAACTGATGGGG 1090
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 731 AAGATCTTATAGCATTCCCTCAAGCATCTATCTGAAGCAGGAGCCAAGAAACTGATGGGG 790
Query 1091 GAGGAAACTGGATTT 1105
|||||||||||||||
Sbjct 791 GAGGAAACTGGATTT 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5