BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60680.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475262 jgi|Araly1|475262|fgenesh2_kg.2__392__AT1G60680.1 1637 0.0
Ahg475258 jgi|Araly1|475258|fgenesh2_kg.2__388__AT1G60730.1 1269 0.0
Ahg475260 jgi|Araly1|475260|fgenesh2_kg.2__390__AT1G60710.1 1151 0.0
Ahg924983 jgi|Araly1|924983|scaffold_200544.1 1125 0.0
Ahg919886 jgi|Araly1|919886|scaffold_101167.1 496 2e-139
Ahg907392 jgi|Araly1|907392|Al_scaffold_0002_473 231 7e-60
Ahg924984 jgi|Araly1|924984|scaffold_200545.1 132 8e-30
> Ahg475262 jgi|Araly1|475262|fgenesh2_kg.2__392__AT1G60680.1
Length=1168
Score = 1637 bits (886), Expect = 0.0
Identities = 1053/1135 (93%), Gaps = 5/1135 (0%)
Strand=Plus/Plus
Query 1 CACTCAGTTCTAAACTCTACAAAAGAGAGAAAGAGAGAAAGCGAGTTGTGACATAAAATC 60
|||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||
Sbjct 1 CACTCAGTTCTAAACTCTACAAAAGAGAGAAAGAGAGAGTGAGAATTGTGACA-AAAATC 59
Query 61 CATGGCTGAAGCTTGCAGAGTTAGGAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATC 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 CATGGCTGAAGCTTGCAGAGTGAGGAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATC 119
Query 121 TGCGCAAGGCCTTGGCTGCATGGCCCTCTCCGCTCGATACGGTGCTCCCAAGCCGGAAAC 180
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 GGCACAAGGCCTTGGTTGCATGGCCCTCTCCGCTCGCTACGGTGCTCCCAAGCCGGAAAC 179
Query 181 TGACGCCATCGCTCTCCTCCACCATGCTATTAACTCCGGTGTTACTTTCTTTGACACCTC 240
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 180 TGAAGCCATCGCTCTCCTCCACCATGCTATCAACTCTGGTGTTACTTTCTTTGACACCTC 239
Query 241 TGACATGTATGGTCCTGAAACCAACGAGTTGCTCCTCGGAAAGGCTCTGAAAGATGGGGT 300
||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||| |
Sbjct 240 TGACATGTACGGTCCTGAGACCAACGAGTTGCTCCTAGGCAAGGCTCTGAAAGATGGCTT 299
Query 301 GAAGGAGAAAGTGGAGCTTGCGACCAAATTTGGATTCTTTATAGTAGAGGGGGAAATTTC 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAGGAGAAAGTAGAGCTTGCGACCAAATTTGGATTCTTTATAGTAGAGGGGGAAATTTC 359
Query 361 TGAGGTAAGAGGAGATCCTGAGTATGTAAGGGCAGCGTGTGAGGCTAGTTTAAAGAGGCT 420
|| ||||||||||||||||||||||||| || ||||||||||| ||| |||||||| |
Sbjct 360 CGAAATAAGAGGAGATCCTGAGTATGTAAGAGCTGCGTGTGAGGCAAGTGTAAAGAGGTT 419
Query 421 AGATATTGCCTGCATTGATCTTTATTATCAGCATCGAATCGATACTCGTGTCCCTATCGA 480
||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 420 AGATATTGCCTGCATTGATCTCTATTATCAGCATCGTGTCGATACTCGTGTTCCTATCGA 479
Query 481 AATCACTATGAGAGAACTGAAGAAGCTAGTTGAAGAGGGTAAGATAAAGTATATTGGTCT 540
|||||||||| ||||||| ||||||||||| ||||| ||||| ||||| ||||||||| |
Sbjct 480 AATCACTATGGGAGAACTTAAGAAGCTAGTGGAAGAAGGTAAAATAAACTATATTGGTTT 539
Query 541 GTCAGAAGCTTCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACCCGATAACTGCGGT 600
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 540 GTCAGAAGCTTCAGCTTCAACTATCAGAAGAGCGCATGCTGTTCACCCGATAACCGCTGT 599
Query 601 GCAAATAGAATGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTCCTATCTGCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 600 GCAAATAGAATGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTCCAACCTGCAG 659
Query 661 GGAACTTGGGATTGGAATCGTAGCTTATAGCCCTCTAGGAAGAGGCTTCTTAGCAGCAGG 720
||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 GGAACTTGGGATTGGTATAGTAGCTTATAGCCCTCTAGGAAGAGGCTTCTTAGCATCAGG 719
Query 721 ACCCAAACTTGCTGAGAATCTGGAAAACGATGACTTCAGAAAGACTCTACCAAGATTCCA 780
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 720 ACCCAAGCTTGCTGAGAATCTGGAAGACGATGACTTCAGAAAGACTCTACCAAGATTCCA 779
Query 781 ACAAGAAAACGTAGACCACAACAAGATTCTCTTTGAGAAAGTTTCTGCAATGGCTGAGAA 840
||| |||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 780 ACAGGAAAACTTAGACCACAACAAGATTCTCTTTGAGAAAGTATCTGCAATGTCTGCGAA 839
Query 841 GAAAGGGTGCACTCCAGCACAACTAGCC-TTAGCATGGGTTCATCACCAGGGAGATGATG 899
|||||| ||| |||| |||||||||||| || |||||||||||||||||||||| |||||
Sbjct 840 GAAAGGATGCTCTCCCGCACAACTAGCCCTT-GCATGGGTTCATCACCAGGGAGCTGATG 898
Query 900 TTTGCCCCATTCCAGGAACCACTAAGATTGAAAACCTCAACCAGAACATTAGAGCTTTGT 959
|||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |
Sbjct 899 TTTGCCCCATTCCAGGAACCACGAAGATCGAAAACCTCAACCAGAACATTGGAGCTTTAT 958
Query 960 CAGTAAAACTCACT-CCTGAAGAAATATCTGAGCTCGACTCCCTTGCCAAACCAGAGTCT 1018
|||| ||||| ||| || ||||| || ||||||||||| ||||||||| ||||| |||||
Sbjct 959 CAGTGAAACTTACTACC-GAAGAGATGTCTGAGCTCGAGTCCCTTGCCCAACCACAGTCT 1017
Query 1019 GTGAAAGGAGAAAGATACATGGCCTCAATGTCCACCTTCAAGAACTCCAACACTCCACCG 1078
||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1018 GTGCAAGGAGAAAGATATATGGCCTCAGTGTCCACCTTCAAGAACTCCGACACTCCACCG 1077
Query 1079 TTGTCTTCCTGGAAAGCCACTTAAAACCGCATGAGAGTTTCTCTAGCTAAACCTA 1133
|||||||| ||||||||| |||||||| |||||||||||||||| || |||||||
Sbjct 1078 TTGTCTTCTTGGAAAGCCGCTTAAAACTGCATGAGAGTTTCTCTGGCCAAACCTA 1132
> Ahg475258 jgi|Araly1|475258|fgenesh2_kg.2__388__AT1G60730.1
Length=1151
Score = 1269 bits (687), Expect = 0.0
Identities = 946/1070 (88%), Gaps = 21/1070 (2%)
Strand=Plus/Plus
Query 61 CATGGCTGAAGCTTGCAGAGTTAGGAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATC 120
|||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 27 CATGGCGGAAGCTTGCGGAGTGAGAAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATC 86
Query 121 TGCGCAAGGCCTTGGCTGCATGGCCCTCTCCGCTCGATACGGTGCTCCCAAGCCGGAAAC 180
|||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 87 GGCGCAAGGCCTTGGTTGCATGGGCCTCTCCGCTTTTTACGGTGCTCCCAAGCCGGAAAC 146
Query 181 TGACGCCATCGCTCTCCTCCACCATGCTATTAACTCCGGTGTTACTTTCTTTGACACCTC 240
|| |||||||||||| ||||||| |||||| |||||||||| |||||| ||||||||||
Sbjct 147 CGAAGCCATCGCTCTCATCCACCACGCTATTCACTCCGGTGTCACTTTCCTTGACACCTC 206
Query 241 TGACATGTATGGTCCTGAAACCAACGA-GTTGCTCCTCGGAAAGGCTCTGAAAGATGGGG 299
|||||| || ||||||||||||||||| ||| || ||| | |||||||| || ||||| |
Sbjct 207 TGACATTTACGGTCCTGAAACCAACGAGGTT-CTTCTCAGCAAGGCTCTCAAGGATGGAG 265
Query 300 TGAAG-GAGAAAGTGGAGCTTGCGACCAAATTTGGATTC-TTTATAGTAGAGGGGGAAAT 357
|| || || |||||||| ||||||||||||| |||| || ||| | ||| |||||||
Sbjct 266 TG-AGAGAAAAAGTGGAACTTGCGACCAAATATGGAATCAGGTAT-GCAGA-GGGGAAA- 321
Query 358 TTCTGAG-GTAAGAGGAGATCCTGAGTATGTAAGGGCAGCGTGTGAGGCTAGTTTAAAGA 416
| ||| |||| |||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 322 GT-AGAGTTTAAG-GGAGATCCTGCTTATGTAAGAGCTGCGTGTGAGGCTAGTTTAAAGA 379
Query 417 GGCTAGATATTGCCTGCATTGATCTTTATTATCAGCATCGAATCGATACTCGTGTCCCTA 476
|||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 380 GGCTAGATGTTACCTGCATTGATCTTTATTATCAGCATCGAATTGATACTCGTGTCCCTA 439
Query 477 TCGAAATCACTA-TGAGAGAACTGAAGAAGCTAGTTGAAGAGGGTAAGATAAAGTATATT 535
|||||||||||| || |||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 440 TCGAAATCACTATTG-GAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATC 498
Query 536 GGTCTGTCAGAAGCTTCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACCCGATAACT 595
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 499 GGTTTGTCAGAAGCTTCAGCTTCAACTATCAGACGAGCACATGCTGTTCACCCGATAACC 558
Query 596 GCGGTGCAAATAGAATGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTCCTATC 655
|| ||||||| ||||||||||||||||||||||| | |||||||||| ||||||| | |
Sbjct 559 GCTATGCAAATTGAATGGTCCTTATGGTCGAGAGATGTGGAAGAAGATGTCATTCCAACC 618
Query 656 TGCAGGGAACTTGGGATTGGAATCGTAGCTTATAGCCCTCTAGGAAGAGGCTTCTTAGCA 715
|||||||||||||| |||||||| || ||||| || |||||||||||||| ||||| |||
Sbjct 619 TGCAGGGAACTTGGAATTGGAATTGTTGCTTACAGTCCTCTAGGAAGAGGTTTCTTTGCA 678
Query 716 GCAGGACCCAAACTTGCTGAGAATCTGGAAAACGATGACTTCAGAAAGACTCTACCAAGA 775
||||||| || |||| |||||| || || || ||||||||||||||||||||||||||
Sbjct 679 TCAGGACCGAAGCTTGTTGAGAACCTAGACAATAATGACTTCAGAAAGACTCTACCAAGA 738
Query 776 TTCCAACAAGAAAACGTAGACCACAACAAGATTCTCTTTGAGAAAGTTTCTGCAATGGCT 835
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 739 TTCCAACAGGAAAACTTAGACCACAACAAGATTCTCTTTGAGAAAGTTTCTGCAATGTCG 798
Query 836 GAGAAGAAAGGGTGCACTCCAGCACAACTAGCC-TTAGCATGGGTTCATCACCAGGGAGA 894
|||||||||||||||||||| || ||||||||| || |||||||||||||||||||||||
Sbjct 799 GAGAAGAAAGGGTGCACTCCCGCGCAACTAGCCCTT-GCATGGGTTCATCACCAGGGAGA 857
Query 895 TGATGTTTGCCCCATTCCAGGAACCACTAAGATTGAAAACCTCAACCAGAACATTAGAGC 954
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 858 TGATGTTTGCCCCATCCCAGGAACCACTAAGATTGAAAACCTTAACCAGAACATTGGAGC 917
Query 955 TTTGTCAGTAAAACTCACTCCTGAAGAAATATCTGAGCTCGACTCCCTTGCCAAACCAGA 1014
||| ||||| ||||| ||||| ||||| || ||||||||||| ||||||||| |||||||
Sbjct 918 TTTATCAGTGAAACTTACTCCCGAAGAGATGTCTGAGCTCGAGTCCCTTGCCCAACCAGA 977
Query 1015 GTCTGTGAAAGGAGAAAGATACATG-GCCTCAATGTCCACCTTCAAGAACTCCAACACTC 1073
|||||||||||||||||||| ||| || || || |||| ||||||||||| | ||||
Sbjct 978 GTCTGTGAAAGGAGAAAGATCCATTAGCATCC-TGACCACGTTCAAGAACTCTGAGACTC 1036
Query 1074 CACCGTTGTCTTCCTGGAAAGCCACTTAAAACCG-CATGAGAGTTTCTCT 1122
|||| |||||||| ||||||||| ||||||| || | |||| |||||||
Sbjct 1037 CACCATTGTCTTCTTGGAAAGCCGCTTAAAATCGTC-TGAG--TTTCTCT 1083
> Ahg475260 jgi|Araly1|475260|fgenesh2_kg.2__390__AT1G60710.1
Length=1197
Score = 1151 bits (623), Expect = 0.0
Identities = 935/1084 (86%), Gaps = 27/1084 (2%)
Strand=Plus/Plus
Query 34 AGAGAAAG--C-GAGTTGTGACATAAAATCCATGGCTGAAGCTTGCAGAGTTAGGAGGAT 90
|||||||| | || || ||||| | || |||||| ||||||||| |||| || |||||
Sbjct 45 AGAGAAAGTTCTGATTTCTGACA-GAGATTCATGGCGGAAGCTTGCGGAGTGAGAAGGAT 103
Query 91 GAAGCTAGGAAGCCAAGGCCTTGAGGTATCTGCGCAAGGCCTTGGCTGCATGGCCCTCTC 150
|||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||
Sbjct 104 GAAGCTAGGAAGCCAAGGCCTTGAGGTATCGGCGCAAGGCCTCGGTTGCATGGGCCTCTC 163
Query 151 CGCTCGATACGGTGCTCCCAAGCCGGAAACTGACGCCATCGCTCTCCTCCACCATGCTAT 210
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 164 CGCTTTCTACGGTGCTCCCAAGCCGGAAACTGACGCCATCGCTCTCATCCACCACGCTAT 223
Query 211 TAACTCCGGTGTTACTTTCTTTGACACCTCTGACATGTATGGTCCTGAAACCAACGAG-T 269
| |||||||||| |||||| |||||||||||||||| || |||||||||||||||||| |
Sbjct 224 TCACTCCGGTGTCACTTTCCTTGACACCTCTGACATCTACGGTCCTGAAACCAACGAGGT 283
Query 270 TGCTCCTCGGAAAGGCTCTGAAAGATGGGGTGA-AGGAGAAAGTGGAGCTTGCGACCAAA 328
| ||||| |||||||||||||||||||| || | || | |||||||| ||||||||||||
Sbjct 284 T-CTCCTTGGAAAGGCTCTGAAAGATGGAGTTAGAGAA-AAAGTGGAACTTGCGACCAAA 341
Query 329 TTTGGATTCT-TTATAGTAGAGGGGGAAATTTCTGAGGTAAGAGGAGATCCTGAGTATGT 387
|||||| || |||| | |||||| ||| ||||| ||||||||||||||||||||
Sbjct 342 TTTGGAATCAGTTAT-GCAGAGGG--AAAGAGA-GAGGTGAGAGGAGATCCTGAGTATGT 397
Query 388 AAGGGCAGCGTGTGAGGCTAGTTTAAAGAGGCTAGATATTGCCTGCATTGATCTTTATTA 447
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 398 AAGGGCTGCTTGTGAGGCTAGTTTAAAGAGGCTAGATATTGCCTGTATTGATCTTTATTA 457
Query 448 TCAGCATCGAATCGATACTCGTGTCCCTATCGAAATCACTATGAGAGAACTGAAGAAGCT 507
|||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 458 TCAGCACCGTGTCGATACTCGTGTTCCTATCGAAATCACTATGGGAGAACTGAAGAAGCT 517
Query 508 AGTTGAAGAGGGTAAGATAAAGTATATTGGTCTGTCAGAAGCTTCAGCTTCAACTATCAG 567
|||||||||||||| |||||||| |||||| |||| ||||| || ||||||||||||||
Sbjct 518 GGTTGAAGAGGGTAAAATAAAGTACATTGGTTTGTCTGAAGCCTCTGCTTCAACTATCAG 577
Query 568 AAGAGCACATGCTGTTCACCCGATAACTGCGGTGCAAATAGAATGGTCCTTATGGTCGAG 627
|||||| |||||||||||||| || ||||| ||||| ||||||||||||| ||| ||||
Sbjct 578 AAGAGCGCATGCTGTTCACCCAATTACTGCTGTGCAGTTAGAATGGTCCTTGTGGACGAG 637
Query 628 AGACGCGGAAGAAGATATCATTCCTATCTGCAGGGAACTTGGGATTGGAATCGTAGCTTA 687
||| | ||||||||| |||||||| | ||||||||||||||||||||| || || |||||
Sbjct 638 AGATGTGGAAGAAGAAATCATTCCGACCTGCAGGGAACTTGGGATTGGGATTGTTGCTTA 697
Query 688 TAGCCCTCTAGGAAGAGGCTTCTTAGCAGCAGGACCCAAACTTGCTGAGAATCTGGAAAA 747
||| ||||||||| |||| ||||| ||| | |||||||| |||| |||||| || |||||
Sbjct 698 TAGTCCTCTAGGACGAGGTTTCTTTGCATCTGGACCCAAGCTTGTTGAGAACCTAGAAAA 757
Query 748 CGATGACTTCAGAAAGACTCTACCAAGATTCCAACAAGAAAA-CGTAGACCACAACAAGA 806
||||||||||||||| ||||||||||||||||| | ||||| | |||||||||||||||
Sbjct 758 GGATGACTTCAGAAAGGCTCTACCAAGATTCCAAGA-GAAAAACTTAGACCACAACAAGA 816
Query 807 TTCTCTT-TGAGAAAGTTTCTGCAATGGCTGAGAAGAAAGGGTGCACTCCAGCACAACTA 865
|| | || |||||| |||| |||||| | || |||||||| |||||||| ||||| ||
Sbjct 817 TTGT-TTATGAGAAGGTTTGTGCAATCTCGGAAAAGAAAGGATGCACTCCTGCACAGTTA 875
Query 866 GC-CTTAGCATGGGTTCATCACCAGGGAGATGATGTTTGCCCCATTCCAGGAACCACTAA 924
|| || ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 876 GCTCTG-GCATGGGTTCACCACCAGGGAGATGATGTTTGTCCCATCCCAGGAACCACTAA 934
Query 925 GATTGAAAACCTCAACCAGAACATTAGAGCTTT-GTCAGTAAAACTCACTCCTGAAGAAA 983
||| |||||||||||||| |||||| ||||||| | |||| |||||||| || ||||| |
Sbjct 935 GATCGAAAACCTCAACCAAAACATTGGAGCTTTAG-CAGTGAAACTCACACCCGAAGAGA 993
Query 984 T-ATCTGAGCTCGACTCCCTTGCCAAACCAGAGTCT-GTGAAAGGAGAAAGATACA-TGG 1040
| | ||||||| || || ||||| |||||| || | |||||||| ||||||||| | |
Sbjct 994 TGA-CTGAGCTTGAGGCCATTGCCCAACCAG-GTGTTGTGAAAGGGGAAAGATACGGTAG 1051
Query 1041 CCTCAATGTCCACCTTCAAGAACTCCAACACTCCACCGTTGTCTTCCTGGAAAGCCACTT 1100
| | | | |||| ||||||||||| ||||||||||||||||||| |||||||| |||
Sbjct 1052 CATGA-TACCCACTTTCAAGAACTCTGACACTCCACCGTTGTCTTCTTGGAAAGCTGCTT 1110
Query 1101 AAAA 1104
||||
Sbjct 1111 AAAA 1114
> Ahg924983 jgi|Araly1|924983|scaffold_200544.1
Length=1085
Score = 1125 bits (609), Expect = 0.0
Identities = 903/1045 (86%), Gaps = 19/1045 (2%)
Strand=Plus/Plus
Query 56 AAATCCATGGCTGAAGCTTGCAGAGTTAGGAGGATGAAGCTAGGAAGCCAAGGCCTTGAG 115
|||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 22 AAATTCATGGCGGAAGCTTGCAGAGTGCGGAGGATGAAGCTAGGAAGCCAAGGCCTCGAG 81
Query 116 GTATCTGCGCAAGGCCTTGGCTGCATGGCCCTCTCCGCTCGA-TACGGTGCTCCCAAGCC 174
||||| |||||||||||||| ||||||| |||||| | || | ||||||||| |||||||
Sbjct 82 GTATCGGCGCAAGGCCTTGGTTGCATGGGCCTCTCTGGTC-ATTACGGTGCTTCCAAGCC 140
Query 175 GGAAACTGACGCCATCGCTCTCCTCCACCATGCTATTAACTCCGGTGTTACTTTCTTTGA 234
||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||| ||||
Sbjct 141 GGAAACTGAAGCCATCGCTCTTATCCACCACGCTATTAACTCCGGCGTTACTTTCCTTGA 200
Query 235 CACCTCTGACATGTATGGTCCTGAAACCAACG-AGTTGCTCCTCGGAAAGGCTCTGAAAG 293
||||||||||||||||||||||||||| || | | || ||||| ||||||||||| || |
Sbjct 201 CACCTCTGACATGTATGGTCCTGAAACTAATGAAATT-CTCCTTGGAAAGGCTCTTAAGG 259
Query 294 ATGGGGTGAAGGAGAAAGTGGAGCTTGCGACCAAATTTGG-ATTCTTTATAGTAGAGGGG 352
|||| |||| |||||||||||||||||||||||||||||| ||| ||| | ||| ||
Sbjct 260 ATGGTGTGAGGGAGAAAGTGGAGCTTGCGACCAAATTTGGAATTAGCTAT-GCAGA--GG 316
Query 353 GAAATTTCTG-AGGTAAGAGGAGATCCTGAGTATGTAAGGGCAGCGTGTGAGGCTAGTTT 411
|||| | | |||| |||||||||| ||||| || || || ||||||||||||||
Sbjct 317 GAAA-GAGGGAAATTAAG-GGAGATCCTGCCTATGTTAGAGCTGCTTGTGAGGCTAGTTT 374
Query 412 AAAGAGGCTAGATATTGCCTGCATTGATCTTTATTATCAGCATCGAATCGATACTCGTGT 471
|||| |||||||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 375 AAAGCGGCTAGATGTTTCCTGCATTGATCTTTATTATCAGCATCGGATCGATACTCGTGT 434
Query 472 CCCTATCGAAATCACTATGAGAGAACTGAAGAAGCTAGTTGAAGAGGGTAAGATAAAGTA 531
||||||||||||||||||| ||||||| |||||||| |||||||||||||| ||||||||
Sbjct 435 CCCTATCGAAATCACTATGGGAGAACTAAAGAAGCTGGTTGAAGAGGGTAAAATAAAGTA 494
Query 532 TATTGGTCTGTCAGAAGCTTC-AGCTTCAACTATCAGAAGAGCACATGCTGTTCACCCGA 590
|| ||| |||| || || || || || |||||||||||||| |||||||||||||| |
Sbjct 495 CATCGGTTTGTCTGAGGCCTCTGGC-TCGACTATCAGAAGAGCGCATGCTGTTCACCCAA 553
Query 591 TAACTGCGGTGCAAATAGAATGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTC 650
| ||||| ||||| |||| |||||| | ||| ||||||||| ||||||||| ||| | |
Sbjct 554 TTACTGCCGTGCAGTTAGAGTGGTCCCTGTGGACGAGAGACGTGGAAGAAGAAATCGTCC 613
Query 651 CTATCTGCAGGGAACTTGGGATTGGAATCGTAGCTTATAGCCCTCTAGGAAGAGGCTTCT 710
| | ||||||||||||||||||||| || || |||| || ||||||||| |||| ||||
Sbjct 614 CAACCTGCAGGGAACTTGGGATTGGGATTGTTTCTTACAGTCCTCTAGGACGAGGTTTCT 673
Query 711 TAGCAGCAGGACCCAAACTTGCTGAGAATCTGGA-AA-ACGATGACTTCAGAAAGACTCT 768
| ||| | |||||||| |||| |||||| || || || | | ||||||||||||| ||||
Sbjct 674 TTGCATCGGGACCCAAGCTTGTTGAGAACCTAGACAATA-G-TGACTTCAGAAAGGCTCT 731
Query 769 ACCAAGATTCCAACAAGAAAACGTAGACCACAACAAGATTCTCTTTGAGAAAGTTTCTGC 828
||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||| |||
Sbjct 732 ACCAAGATTCCAACAGGAAAACTTAGACCACAACAAGATTCTCTATGAGAAGGTTTGTGC 791
Query 829 AATGGCTGAGAAGAAAGGGTGCACTCCAGCACAACTAGCCTTAGCATGGGTTCATCACCA 888
||| | |||||||||| |||| ||| | |||||||||| | || |||||||| |||||
Sbjct 792 AATATCAAAGAAGAAAGGATGCAGTCCCGGACAACTAGCCCTCGCCTGGGTTCACCACCA 851
Query 889 GGGAGATGATGTTTGCCCCATTCCAGGAACCACTAAGATTGAAAACCTCAACCAGAACAT 948
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 852 AGGAGATGATGTTTGCCCCATCCCAGGAACCACTAAGATTGAAAACCTCAACCAGAACAT 911
Query 949 TAGAGCTTTGTCAGTAAAACTCACTCCTGAAGAAATATCTGAGCTCGACTCCCTTGCCAA 1008
| ||||||| ||||| ||||||||||||||||| || ||||||||||| || ||||| |
Sbjct 912 TGGAGCTTTATCAGTGAAACTCACTCCTGAAGAGATGTCTGAGCTCGAGACCATTGCCCA 971
Query 1009 ACCAGAGTCTGTGAAAGGAGAAAGATACATGGCCTCAATGTCCA-CCTTCAAGAACTCCA 1067
||||||||||||||||||||||||||||||||| || || ||| |||||||||||||
Sbjct 972 ACCAGAGTCTGTGAAAGGAGAAAGATACATGGCAACAGTG-CCAACCTTCAAGAACTCTG 1030
Query 1068 ACACTCCACCGTTGTCTTCCTGGAA 1092
||||||||||||||||||| |||||
Sbjct 1031 ACACTCCACCGTTGTCTTCTTGGAA 1055
> Ahg919886 jgi|Araly1|919886|scaffold_101167.1
Length=1037
Score = 496 bits (268), Expect = 2e-139
Identities = 524/646 (81%), Gaps = 24/646 (4%)
Strand=Plus/Plus
Query 458 ATCGATA-CTCGTGTCCCTATCGAAATCACTA-TGAGAGAACTGAAGAAGCTAGTTGAAG 515
||||||| | | |||||| || ||| |||||| || ||||||| ||||||||||||||||
Sbjct 376 ATCGATACCAC-TGTCCCCATTGAAGTCACTATTG-GAGAACTAAAGAAGCTAGTTGAAG 433
Query 516 AGGGTAAGATAAAGTATATTGGTCTGTCAGAAGCTTCAGCTTCAACTATCAGAAGAGCAC 575
|||||||||||||||| |||||| |||| ||||| || || |||||||| || |||| |
Sbjct 434 AGGGTAAGATAAAGTACATTGGTTTGTCCGAAGCCTCTGCCTCAACTATAAGGCGAGCCC 493
Query 576 ATGCTGTTCACCCGATAACTGCGGTGCAAATAGAATGGTCCTTATGGTCGAGAGACGCGG 635
|||||||||||||| |||| || ||||| | |||||||| || ||||||||||||| |
Sbjct 494 ATGCTGTTCACCCGCTAACAGCCGTGCAGTTGGAATGGTCTTTGTGGTCGAGAGACGTTG 553
Query 636 AAGAAGATATCATTCCTATCT-GCAGGGAACTTGGGATTGGAATCGTAGCTTATAGCCCT 694
||||||| |||||||||| || |||||||||| ||||||||||| ||||||||||| |||
Sbjct 554 AAGAAGACATCATTCCTA-CTTGCAGGGAACTCGGGATTGGAATTGTAGCTTATAGTCCT 612
Query 695 CTAGGAAGAGGCTTCTTAGCAGCAGGACCCAAACTTGC-T-GAGAATCTGGAAAACGATG 752
|| ||| | |||||||| || |||||||| ||| || | | |||||| |||| || | ||
Sbjct 613 CTGGGACGGGGCTTCTTTGCTGCAGGACC-AAAGTT-CATTGAGAATATGGACAATGGTG 670
Query 753 ACTTCAGAAAGACTCTACCAAGATTCCAACAAGAAAACGTAGACCACAACAAGATTCTCT 812
||| ||||||| | |||| |||||||| ||||| ||| |||||||||||||||||||||
Sbjct 671 ACTACAGAAAGGGTTTACCGAGATTCCAGCAAGAGAACCTAGACCACAACAAGATTCTCT 730
Query 813 TTGAGAAAGTTTCTGCAATGGCTGAGAAGAAAGGGTGCACTCCAGCACAACTAGCCTTAG 872
|||||| || ||||||||| ||||||||| | || ||||| |||||| |||| || |
Sbjct 731 ATGAGAAGGTCAATGCAATGGCAGAGAAGAAAAGCTGTACTCCTGCACAATTAGCTTTGG 790
Query 873 CATGGGTTCATCACCAGGGAGATGATGTTTGCCCCATTCCAGGAACCACTAAGATTGAAA 932
|||||||||||||||| ||| ||||||| ||||| || ||||||||| | ||||| |||
Sbjct 791 CATGGGTTCATCACCAAGGAAATGATGTCTGCCCAATCCCAGGAACCTCCAAGATCAAAA 850
Query 933 ACCTCAACCAGAACATTAG-AGCTTTGTCAGTAAAACTCACTC-CTGAAGAAATATCTGA 990
|||| | |||||||| || |||||| || || ||||||||| | ||||| || | ||
Sbjct 851 ACCTTGATCAGAACAT-AGGAGCTTTATCTGTCAAACTCACTATC-GAAGAGATGGCCGA 908
Query 991 GCTCGACTCCCTTGC-CAAACCAGAGTCTGTGAAAGGAGAAAGAT-ACATGGCCTCA-AT 1047
||| ||| || | | || || || ||||||||||| ||||| | || ||| | ||
Sbjct 909 GCTTGACGCCATGGGACAT-CCGGATTCTGTGAAAGGGGAAAGCTCACCCA-CCT-ATAT 965
Query 1048 -GTCCACCTTCAAGAACTCC-AACACTCCACCGTTGTCTTCCTGGA 1091
|| |||| |||||| ||| || |||||||| |||||||| ||||
Sbjct 966 AGTT-ACCTACAAGAATTCCGAA-ACTCCACCATTGTCTTCTTGGA 1009
> Ahg907392 jgi|Araly1|907392|Al_scaffold_0002_473
Length=1062
Score = 231 bits (125), Expect = 7e-60
Identities = 156/171 (91%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 492 GAGAACTGAAGAAGCTAGTTGAAG-AGGGTAAGATAAAGTATATTGGTCTGTCAGAAGCT 550
|||| |||||||||||||| |||| |||| || ||||||||||| ||| |||||||||||
Sbjct 383 GAGAGCTGAAGAAGCTAGTGGAAGAAGGG-AAAATAAAGTATATCGGTTTGTCAGAAGCT 441
Query 551 TCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACCCGATAACTGCGGTGCAAATAGAA 610
|||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 442 TCAGCTTCAACTATCAGAAGAGCACACGCTGTTCATCCGATAACCGCTGTGCAAATAGAA 501
Query 611 TGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTCCTATCTGCAGG 661
||||| |||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 502 TGGTCTTTATGGTCGAGAGACGTGGAAGAAGATATCATTCCAACCTGCAGG 552
> Ahg924984 jgi|Araly1|924984|scaffold_200545.1
Length=535
Score = 132 bits (71), Expect = 8e-30
Identities = 117/139 (84%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 986 TCTGAGCTCGACTCCCTTGCCAAACCAGAGTCTGTGAAAGGAGAAAGATACATGGCCTCA 1045
||||||||||| || || || ||||||||||||||||||||||||||||||||||| ||
Sbjct 399 TCTGAGCTCGAGACCATTTCCCAACCAGAGTCTGTGAAAGGAGAAAGATACATGGCCACA 458
Query 1046 ATGTCCA-CCTTCAAGAACTCCAACACTCCACCGTTGTCTTCCTGGAAAGCCACT-TAAA 1103
|| ||| |||||||||||||| |||| |||||||||| ||| ||||| || | ||||
Sbjct 459 GTG-CCAACCTTCAAGAACTCCGACACACCACCGTTGTGTTCTTGGAATGCTG-TGTAAA 516
Query 1104 ACCGCATGAGAGTTTCTCT 1122
|| | || ||||||||||
Sbjct 517 ACTGTTTGTGAGTTTCTCT 535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5