BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60700.1
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924982 jgi|Araly1|924982|scaffold_200543.1 1587 0.0
> Ahg924982 jgi|Araly1|924982|scaffold_200543.1
Length=1822
Score = 1587 bits (859), Expect = 0.0
Identities = 1003/1075 (93%), Gaps = 0/1075 (0%)
Strand=Plus/Plus
Query 611 AAAGAAGATTCAGGTGTCCCAAGCAATTCTGATATTTTCAAGAATGATGGCGACAAATCA 670
||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||
Sbjct 735 AAAGAAGATTCAGAAATCCCATGCAATTTTGATATCTTCAAGAATGATGGCGACAAATCA 794
Query 671 TCTGCAATTGAAGTTAGATGTGGAGATGAAATCAACATGCAGGGGTCTATGGAGATAATG 730
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 795 TCTGCAAATGAAGTTAGATGTGGAGATGTTGTCAACATGCAGGGGTCTATGGAGATAATG 854
Query 731 TGCATCAATGATGATCATAGACTGTGGAATAAAGACGATGAACCAATACCGATCAGCATT 790
||||| |||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 855 TGCATTAATGATGAGCTTACACTGTGGAATAAAGACGATGAACCAATACCGATCAGCATT 914
Query 791 GTTCCTCCTAATGGCTGCGAAAGCTTATTGCTAGAAACGTGTTCACGTCATCAGATCGAC 850
||||||||| |||| || |||||| |||||||||||| ||||||| |||||||||||||
Sbjct 915 GTTCCTCCTGATGGTTGGGAAAGCGCATTGCTAGAAACATGTTCACTTCATCAGATCGAC 974
Query 851 AGATGTATAAATGAATACAACGTTCATGAGGATAATATTGGTCTTGAAATCTCTCCAATA 910
|||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||
Sbjct 975 AGATGTATAAATGAATACAATGTTCGTGATGATAACATTGGTCTTGAAATCTCTCCAATA 1034
Query 911 CCTTTAACAAAAACTCTTGAAAGACCTAGAAGGCCATGGTCAGTTTGTTGCTCTATAGCT 970
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1035 CCTTTAACAAAAACTCTTGAAAGACCTAGTAGGCCATGGTCAGTTTGTGGCTCTATAGCT 1094
Query 971 GCACTCAGAAACTTACCTCTAATGGAAGATAGCTCAGGTGCTTGTACTTCTTTGGATGAA 1030
||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1095 GCAGTCAGAAACTTACCTCTAATGGAAGATAGCTCAGGTGCTTGTAGTTCTTCGGATGAA 1154
Query 1031 CAATTATATGCAAATGCTACTACCTCTGAGGATAGGGACGCAGAACTTTCTCAACCCCCA 1090
||| ||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||
Sbjct 1155 CAAGTATATGCAAATGCTAATAGCTCTGAGGACAGGGACGCAGAACTTGCTCAAACCCCA 1214
Query 1091 TCAACTCTATATCAGGAAGAAGTGGATGGTGAAGAAGAGATTGACATTGATGCAATGATC 1150
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1215 TCAACTCTATATCAGGAAGAAGTGGATGGAGAAGATGAAATTGACATTGATGCAATGATC 1274
Query 1151 CGCAAATTGAATCTAGTCCCAGATGATTCAGATTCATGCTTCAACAGGGAAGAATGGAAC 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 CGCAAATTGAATCTAGTCCCAGATGATTCAGATTCATGCTTCAACAGGGAAGAATGGAAC 1334
Query 1211 ATGTCTAAGCACCCAAGACATGCATTAATTGGATTGGAACAATGCACAAGAACTTCAATG 1270
|| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 1335 ATATATAAGCACCCAAGACATGCCTTAATTGGATTGGAACACTGCACAAGAACTTCATTG 1394
Query 1271 CAAAGAGCAATTATGTTTCATGGGGCAATTGCCGTCCTGCATTGTCCTGATTCAAAGCAT 1330
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1395 CAAAGAGCAAATATGTTTCATGGGGCAATTGCCATCCTGCATTGTCGTGATTCAAAGCAT 1454
Query 1331 TTTGTCAGAAAACGCGAGGTAATTATTGGGAGATCATCTGGTGGCCTGAATGTTGACATT 1390
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1455 TTTGTCAGAAAACGCGAGGTAATTATTGGGAGATCATCTGATGGCCTGAATGTTGACATT 1514
Query 1391 GACTTGGGTAAATATAATTATGGGAGCAAGATATCTCGGCGTCAGGCATTGGTTAAGCTA 1450
|||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1515 GACTTGAGTAAATATAACTATGGAAGCAAGATATCTCGGCGTCAGGCATTGGTTAAGCTA 1574
Query 1451 GAGAACTACGGATCATTCTCTCTAAAGAACCTTGGAAAGCAACATATCCTTGTAAATGGC 1510
|||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1575 GAGAACAACGAATCATTCTCTCTAAAGAACCTTGGAAAGCGACATATTCTTGTAAATGGA 1634
Query 1511 GGAAAACTCGATAGAGGCCAGATTGTAACCCTCACATCGTGTAGTTCAATCAATATTAGA 1570
| ||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1635 GAAAAACTCGATACAGGACAGATTGCAACCCTCACATCGTGTAGTTCAATCGATATTAGA 1694
Query 1571 GGAATAACCTTTGTGTTCAAGATTAACAAAGAAGCAGTGGGACAATTCTTGAAGAACAAC 1630
||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1695 GGAGTAACCTTTGTGTTCAAGATTAACAAAGAAGCCGTGAGACAATTCTTGGAGAACAAC 1754
Query 1631 ACACGGAGGAAGAGCGAGGACGACAATAAATTCAGATGGTGTGAATAGATTCTGT 1685
||||| || |||| |||||| |||| |||||||||||||| |||||||||||||
Sbjct 1755 ACACGAAGAAAGACCGAGGAAGACACCAAATTCAGATGGTGCGAATAGATTCTGT 1809
Score = 625 bits (338), Expect = 4e-178
Identities = 437/484 (90%), Gaps = 9/484 (2%)
Strand=Plus/Plus
Query 107 GAAGGTCTTCGAGTATCTGAGCATCTCTTCGTCAATAAGGATCTCTTCGGTGGTGATGTC 166
||||||||||||| ||||||||||||||||||||||||||| ||| ||| || | |||||
Sbjct 27 GAAGGTCTTCGAGAATCTGAGCATCTCTTCGTCAATAAGGACCTCGTCGATGATTATGTC 86
Query 167 AAAATTTCTGGTGAAGAAGATACATCAGAGAGTTCCAATGTCAAAAGGAAAGTTGAAAGT 226
||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 87 GAAATTTCCGGTAAAGATGATACATCAGAAAGTTCCAATGTCAAAAGGAAAGTTGAAACT 146
Query 227 CTATTCTCTGTCATGAGAAAGAGAACATGTAGGCACAAGTCTGT---TGATGATGATATG 283
|| |||| ||| |||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 147 CTCTTCTGTGTTATGAGAAAGAGAACTTGTAGGCACAACTCTGTCGATGATGATGATATG 206
Query 284 TTTCCGGATTTAGATAATAATGCAGATATTGGTGATGGTGATGAGGATATACGAAATTGT 343
|||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct 207 TTTCCGGATTTAGATAATAATGCAGAGAAAGGTGGTGGTGATGAGGATATACGAAATTGT 266
Query 344 CTGAGACCTGAAAGTGATTTCTGGTTTAAAAATCTTATGGATAATCCTTATGATCC-TCT 402
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| | |
Sbjct 267 CTGAGACCTGAAAGTGACTTCTGGTTTGAAAATCTTATGGATAATCCTTACGATCCAT-T 325
Query 403 GGATGAGGGTTCAATTGTAGACG-CAAGTGGCAGTGACACAGACATATCTGAATCTTCAG 461
|||||| ||| | |||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 326 GGATGAAGGTACCATTGTAGACGACA-GTGGCAGTGACACAAACATATCTGAATCTTCAG 384
Query 462 AGTTTGATGTTATATCAGAGCATGTTCCT-GAAGACAATGATTTGATAACCGGATCGAAA 520
| |||||||||||||| || ||||||| | ||||| ||||||||| |||| |||||||||
Sbjct 385 AATTTGATGTTATATCGGAACATGTTC-TAGAAGAAAATGATTTGGTAACGGGATCGAAA 443
Query 521 TCTTTGTCTATATGGTCCAGTGAGGATGATGGAACTCTGGTTAGTAAGTGGTCTTCAGAA 580
|||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 444 TCTTTGGCTATATGGTCCAGTGAGGATAAGGGAACTCTGGTTAGTAAGTGGTCTTTAGAA 503
Query 581 ACTC 584
||||
Sbjct 504 ACTC 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70695494720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5