BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60710.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475260 jgi|Araly1|475260|fgenesh2_kg.2__390__AT1G60710.1 1605 0.0
Ahg475258 jgi|Araly1|475258|fgenesh2_kg.2__388__AT1G60730.1 1376 0.0
Ahg924983 jgi|Araly1|924983|scaffold_200544.1 1299 0.0
Ahg475262 jgi|Araly1|475262|fgenesh2_kg.2__392__AT1G60680.1 1129 0.0
Ahg924984 jgi|Araly1|924984|scaffold_200545.1 102 7e-21
> Ahg475260 jgi|Araly1|475260|fgenesh2_kg.2__390__AT1G60710.1
Length=1197
Score = 1605 bits (869), Expect = 0.0
Identities = 1044/1128 (93%), Gaps = 14/1128 (1%)
Strand=Plus/Plus
Query 63 AAAATTCATAGCTCTACAAGAGTCACCTCATAGAGAAGTGAAGAGACAGAGATAGTTGTG 122
|||||||| |||||||||||||||| | | |||| |||| |||||||||||| |||| ||
Sbjct 1 AAAATTCACAGCTCTACAAGAGTCA-C-C-TAGACAAGTCAAGAGACAGAGAAAGTTCTG 57
Query 123 A---C--AGAGAGATTCATGGCGGAAGCTTGCGGAGTGAGAAGGATGAAGCTGGGAAGCC 177
| | | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 58 ATTTCTGACAGAGATTCATGGCGGAAGCTTGCGGAGTGAGAAGGATGAAGCTAGGAAGCC 117
Query 178 AAGGCCTTGAGGTATCTGCGCAAGGCCTTGGTTGCATGGGCCTCTCCGCTTTCTACGGTG 237
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 AAGGCCTTGAGGTATCGGCGCAAGGCCTCGGTTGCATGGGCCTCTCCGCTTTCTACGGTG 177
Query 238 CTCCCAAGCCGGAAAATGAAGCCATCGCTCTCATCCACCACGCTATTCACTCCGGCGTTA 297
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 178 CTCCCAAGCCGGAAACTGACGCCATCGCTCTCATCCACCACGCTATTCACTCCGGTGTCA 237
Query 298 CTCTCCTTGACACCTCCGATATCTACGGCCCTGAGACCAATGAAGTTCTCCTCGGAAAGG 357
|| ||||||||||||| || |||||||| ||||| ||||| || |||||||| |||||||
Sbjct 238 CTTTCCTTGACACCTCTGACATCTACGGTCCTGAAACCAACGAGGTTCTCCTTGGAAAGG 297
Query 358 CTCTCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATTTGGAATCAGTTATG 417
|||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTCTGAAAGATGGAGTTAGAGAAAAAGTGGAACTTGCGACCAAATTTGGAATCAGTTATG 357
Query 418 CAGAGGGGAAA-AGAGAGGTCAGAGGAGATCCTGAATATGTAAGGGCTGCTTGTGAGGCA 476
|||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 358 CAGA-GGGAAAGAGAGAGGTGAGAGGAGATCCTGAGTATGTAAGGGCTGCTTGTGAGGCT 416
Query 477 AGTTTAAAGAGGCTAGATATTGCCTGCATCGATCTCTATTATCAGCATCGTGTCGATACT 536
|||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||
Sbjct 417 AGTTTAAAGAGGCTAGATATTGCCTGTATTGATCTTTATTATCAGCACCGTGTCGATACT 476
Query 537 CGTGTCCCTATCGAAATCACTATGGGAGAACTGAAGAAGCTGGTTGAAGAGGGTAAAATA 596
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGTGTTCCTATCGAAATCACTATGGGAGAACTGAAGAAGCTGGTTGAAGAGGGTAAAATA 536
Query 597 AAGTACATTGGTTTGTCTGAAGCCTCTGCCTCAACTATCAGAAGAGCACATGCTGTTCAC 656
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 537 AAGTACATTGGTTTGTCTGAAGCCTCTGCTTCAACTATCAGAAGAGCGCATGCTGTTCAC 596
Query 657 CCAATTACTGCCGTGCAGATAGAATGGTCCTTGTGGACGAGAGATGTGGAAGAAGAAATC 716
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCAATTACTGCTGTGCAGTTAGAATGGTCCTTGTGGACGAGAGATGTGGAAGAAGAAATC 656
Query 717 ATTCCGACCTGCAGGGAACTTGGGATTGGGATTGTTGCTTACAGTCCTCTAGGACGAGGT 776
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 657 ATTCCGACCTGCAGGGAACTTGGGATTGGGATTGTTGCTTATAGTCCTCTAGGACGAGGT 716
Query 777 TTCTTCGCATCTGGACCCAAGCTTGTTGAGAACCTAGAAAAGGATGACTTCAGAAAGGCT 836
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TTCTTTGCATCTGGACCCAAGCTTGTTGAGAACCTAGAAAAGGATGACTTCAGAAAGGCT 776
Query 837 CTACCAAGATTCCAAGAGGAAAACTTAGACCACAACAAGATTGTTTATGAAAAAGTTTGT 896
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 777 CTACCAAGATTCCAAGAGAAAAACTTAGACCACAACAAGATTGTTTATGAGAAGGTTTGT 836
Query 897 GCAATATCGGAGAAGAAAGGGTGCACTCCTGGACAACTAGCCCTGGCATGGGTTCATCAC 956
||||| ||||| |||||||| |||||||||| ||| |||| |||||||||||||| |||
Sbjct 837 GCAATCTCGGAAAAGAAAGGATGCACTCCTGCACAGTTAGCTCTGGCATGGGTTCACCAC 896
Query 957 CAGGGAGATGACGTTTG-CCCTATCCCAGGAACCACTAAGATCGAGAACCTCAAACAGAA 1015
||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||| || ||
Sbjct 897 CAGGGAGATGATGTTTGTCCC-ATCCCAGGAACCACTAAGATCGAAAACCTCAACCAAAA 955
Query 1016 CATTGGAGCTTT-GTCAGTGAAACTCACTCCTGAAGAGATGACTGAGCTTGAGGCCATTG 1074
|||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 956 CATTGGAGCTTTAG-CAGTGAAACTCACACCCGAAGAGATGACTGAGCTTGAGGCCATTG 1014
Query 1075 CCCAACCAGGTTTTGTGAAAGGAGATAGATACAGTAACATGATACCAACTTTCAAGAACG 1134
||||||||||| |||||||||| || |||||| ||| ||||||||| ||||||||||||
Sbjct 1015 CCCAACCAGGTGTTGTGAAAGGGGAAAGATACGGTAGCATGATACCCACTTTCAAGAACT 1074
Query 1135 CTGAGACACCACCATTGTCTGCTTGGAAAGCCGCTTAAAACCGGCTGA 1182
|||| || ||||| |||||| |||||||||| |||||||| || ||||
Sbjct 1075 CTGACACTCCACCGTTGTCTTCTTGGAAAGCTGCTTAAAATCGTCTGA 1122
Score = 82.4 bits (44), Expect = 9e-15
Identities = 52/55 (95%), Gaps = 3/55 (5%)
Strand=Plus/Plus
Query 1317 GTTAATGCCTTGAAGAATAAATAATGTA--GAGTTCCCC-AAGTGAAAACTTCAA 1368
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1143 GTTAATGCCTTGAAGAATAAATAATGTATAGAGTTCCCCCAAGTGAAAACTTCAA 1197
> Ahg475258 jgi|Araly1|475258|fgenesh2_kg.2__388__AT1G60730.1
Length=1151
Score = 1376 bits (745), Expect = 0.0
Identities = 1004/1129 (89%), Gaps = 18/1129 (2%)
Strand=Plus/Plus
Query 127 AGAGATTCATGGCGGAAGCTTGCGGAGTGAGAAGGATGAAGCTGGGAAGCCAAGGCCTTG 186
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 20 AGAGATTCATGGCGGAAGCTTGCGGAGTGAGAAGGATGAAGCTAGGAAGCCAAGGCCTTG 79
Query 187 AGGTATCTGCGCAAGGCCTTGGTTGCATGGGCCTCTCCGCTTTCTACGGTGCTCCCAAGC 246
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 80 AGGTATCGGCGCAAGGCCTTGGTTGCATGGGCCTCTCCGCTTTTTACGGTGCTCCCAAGC 139
Query 247 CGGAAAATGAAGCCATCGCTCTCATCCACCACGCTATTCACTCCGGCGTTACTCTCCTTG 306
|||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 140 CGGAAACCGAAGCCATCGCTCTCATCCACCACGCTATTCACTCCGGTGTCACTTTCCTTG 199
Query 307 ACACCTCCGATATCTACGGCCCTGAGACCAATGAAGTTCTCCTCGGAAAGGCTCTCAAGG 366
||||||| || || ||||| ||||| ||||| || ||||| ||| | |||||||||||||
Sbjct 200 ACACCTCTGACATTTACGGTCCTGAAACCAACGAGGTTCTTCTCAGCAAGGCTCTCAAGG 259
Query 367 ATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATTTGGAATCAGTTATGCAGAGGGGA 426
|||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 260 ATGGAGTGAGAGAAAAAGTGGAACTTGCGACCAAATATGGAATCAGGTATGCAGAGGGGA 319
Query 427 AAAG-AGAGGTCAGAGG-AGATCCTGAATATGTAAGGGCTGCTTGTGAGGCAAGTTTAAA 484
|| | |||| | | ||| |||||||| |||||||| ||||| |||||||| ||||||||
Sbjct 320 AA-GTAGAGTTTA-AGGGAGATCCTGCTTATGTAAGAGCTGCGTGTGAGGCTAGTTTAAA 377
Query 485 GAGGCTAGATATTGCCTGCATCGATCTCTATTATCAGCATCGTGTCGATACTCGTGTCCC 544
|||||||||| || ||||||| ||||| |||||||||||||| | ||||||||||||||
Sbjct 378 GAGGCTAGATGTTACCTGCATTGATCTTTATTATCAGCATCGAATTGATACTCGTGTCCC 437
Query 545 TATCGAAATCACTATGGGAGAACTGAAGAAGCTGGTTGAAGAGGGTAAAATAAAGTACAT 604
||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| ||
Sbjct 438 TATCGAAATCACTATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATAT 497
Query 605 TGGTTTGTCTGAAGCCTCTGCCTCAACTATCAGAAGAGCACATGCTGTTCACCCAATTAC 664
|||||||| ||||| || || |||||||||||| ||||||||||||||||||| || ||
Sbjct 498 CGGTTTGTCAGAAGCTTCAGCTTCAACTATCAGACGAGCACATGCTGTTCACCCGATAAC 557
Query 665 TGCCGTGCAGATAGAATGGTCCTTGTGGACGAGAGATGTGGAAGAAGAAATCATTCCGAC 724
|| |||| || ||||||||||| ||| ||||||||||||||||||| ||||||| ||
Sbjct 558 CGCTATGCAAATTGAATGGTCCTTATGGTCGAGAGATGTGGAAGAAGATGTCATTCCAAC 617
Query 725 CTGCAGGGAACTTGGGATTGGGATTGTTGCTTACAGTCCTCTAGGACGAGGTTTCTTCGC 784
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 618 CTGCAGGGAACTTGGAATTGGAATTGTTGCTTACAGTCCTCTAGGAAGAGGTTTCTTTGC 677
Query 785 ATCTGGACCCAAGCTTGTTGAGAACCTAGAAAAGGATGACTTCAGAAAGGCTCTACCAAG 844
||| ||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 678 ATCAGGACCGAAGCTTGTTGAGAACCTAGACAATAATGACTTCAGAAAGACTCTACCAAG 737
Query 845 ATTCCAAGAGGAAAACTTAGACCACAACAAGATTGT-TTATGAAAAAGTTTGTGCAATAT 903
||||||| |||||||||||||||||||||||||| | || ||| ||||||| |||||| |
Sbjct 738 ATTCCAACAGGAAAACTTAGACCACAACAAGATTCTCTT-TGAGAAAGTTTCTGCAATGT 796
Query 904 CGGAGAAGAAAGGGTGCACTCCTG-GACAACTAGCCCTGGCATGGGTTCATCACCAGGGA 962
|||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 797 CGGAGAAGAAAGGGTGCACTCCCGCG-CAACTAGCCCTTGCATGGGTTCATCACCAGGGA 855
Query 963 GATGACGTTTGCCCTATCCCAGGAACCACTAAGATCGAGAACCTCAAACAGAACATTGGA 1022
||||| |||||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 856 GATGATGTTTGCCCCATCCCAGGAACCACTAAGATTGAAAACCTTAACCAGAACATTGGA 915
Query 1023 GCTTTGTCAGTGAAACTCACTCCTGAAGAGATGACTGAGCTTGAGGCCATTGCCCAACCA 1082
||||| ||||||||||| ||||| ||||||||| ||||||| ||| || |||||||||||
Sbjct 916 GCTTTATCAGTGAAACTTACTCCCGAAGAGATGTCTGAGCTCGAGTCCCTTGCCCAACCA 975
Query 1083 G-GTTTTGTGAAAGGAGATAGATACAGTAACATGAT-ACCAACTTTCAAGAACGCTGAGA 1140
| || | ||||||||||| |||| || || ||| | |||| | ||||||||| ||||||
Sbjct 976 GAGTCT-GTGAAAGGAGAAAGATCCATTAGCATCCTGACCA-CGTTCAAGAACTCTGAGA 1033
Query 1141 CACCACCATTGTCTGCTTGGAAAGCCGCTTAAAACCGGCTGAAGTTTCTAC-GGTTGTGG 1199
| |||||||||||| ||||||||||||||||||| || |||| |||||| | |||||| |
Sbjct 1034 CTCCACCATTGTCTTCTTGGAAAGCCGCTTAAAATCGTCTGA-GTTTCT-CTGGTTGTTG 1091
Query 1200 TGGTGCATCATGACATTGAAGTGGTCTTAACTTTCTGTCAGCTAGATCA 1248
||| | |||||||| ||||||||||| ||||| ||||||| ||||||
Sbjct 1092 TGGGGT-TCATGACACTGAAGTGGTCT-AACTTA-TGTCAGCCAGATCA 1137
> Ahg924983 jgi|Araly1|924983|scaffold_200544.1
Length=1085
Score = 1299 bits (703), Expect = 0.0
Identities = 956/1077 (89%), Gaps = 21/1077 (2%)
Strand=Plus/Plus
Query 122 GACAGAGAGATTCATGGCGGAAGCTTGCGGAGTGAGAAGGATGAAGCTGGGAAGCCAAGG 181
||| |||| ||||||||||||||||||| ||||| | ||||||||||| |||||||||||
Sbjct 15 GACTGAGAAATTCATGGCGGAAGCTTGCAGAGTGCGGAGGATGAAGCTAGGAAGCCAAGG 74
Query 182 CCTTGAGGTATCTGCGCAAGGCCTTGGTTGCATGGGCCTCTCCGCT-TTCTACGGTGCTC 240
||| |||||||| ||||||||||||||||||||||||||||| | | | |||||||||
Sbjct 75 CCTCGAGGTATCGGCGCAAGGCCTTGGTTGCATGGGCCTCTCTGGTCAT-TACGGTGCTT 133
Query 241 CCAAGCCGGAAAATGAAGCCATCGCTCTCATCCACCACGCTATTCACTCCGGCGTTACTC 300
|||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 134 CCAAGCCGGAAACTGAAGCCATCGCTCTTATCCACCACGCTATTAACTCCGGCGTTACTT 193
Query 301 TCCTTGACACCTCCGATATCTACGGCCCTGAGACCAATGAAGTTCTCCTCGGAAAGGCTC 360
||||||||||||| || || || || ||||| || |||||| ||||||| ||||||||||
Sbjct 194 TCCTTGACACCTCTGACATGTATGGTCCTGAAACTAATGAAATTCTCCTTGGAAAGGCTC 253
Query 361 TCAAGGATGGGGTGAGAGAAAAAGTGGAACTTGCGACCAAATTTGGAATCAGTTATGCAG 420
| |||||||| ||||| || |||||||| |||||||||||||||||||| || |||||||
Sbjct 254 TTAAGGATGGTGTGAGGGAGAAAGTGGAGCTTGCGACCAAATTTGGAATTAGCTATGCAG 313
Query 421 AGGGGAAA-AGAG-AGGTCAGAGGAGATCCTGAATATGTAAGGGCTGCTTGTGAGGCAAG 478
| |||||| || | | | || |||||||||| ||||| || |||||||||||||| ||
Sbjct 314 A-GGGAAAGAGGGAAATTAAG-GGAGATCCTGCCTATGTTAGAGCTGCTTGTGAGGCTAG 371
Query 479 TTTAAAGAGGCTAGATATTGCCTGCATCGATCTCTATTATCAGCATCGTG-TCGATACTC 537
||||||| |||||||| || ||||||| ||||| |||||||||||||| | |||||||||
Sbjct 372 TTTAAAGCGGCTAGATGTTTCCTGCATTGATCTTTATTATCAGCATCG-GATCGATACTC 430
Query 538 GTGTCCCTATCGAAATCACTATGGGAGAACTGAAGAAGCTGGTTGAAGAGGGTAAAATAA 597
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 431 GTGTCCCTATCGAAATCACTATGGGAGAACTAAAGAAGCTGGTTGAAGAGGGTAAAATAA 490
Query 598 AGTACATTGGTTTGTCTGAAGCCTCTGCCTCAACTATCAGAAGAGCACATGCTGTTCACC 657
||||||| ||||||||||| ||||||| ||| |||||||||||||| |||||||||||||
Sbjct 491 AGTACATCGGTTTGTCTGAGGCCTCTGGCTCGACTATCAGAAGAGCGCATGCTGTTCACC 550
Query 658 CAATTACTGCCGTGCAGATAGAATGGTCCTTGTGGACGAGAGATGTGGAAGAAGAAATCA 717
||||||||||||||||| |||| |||||| ||||||||||||| |||||||||||||||
Sbjct 551 CAATTACTGCCGTGCAGTTAGAGTGGTCCCTGTGGACGAGAGACGTGGAAGAAGAAATCG 610
Query 718 TTCCGACCTGCAGGGAACTTGGGATTGGGATTGTTGCTTACAGTCCTCTAGGACGAGGTT 777
| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 611 TCCCAACCTGCAGGGAACTTGGGATTGGGATTGTTTCTTACAGTCCTCTAGGACGAGGTT 670
Query 778 TCTTCGCATCTGGACCCAAGCTTGTTGAGAACCTAGA-AA-AGGATGACTTCAGAAAGGC 835
|||| ||||| |||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 671 TCTTTGCATCGGGACCCAAGCTTGTTGAGAACCTAGACAATAG--TGACTTCAGAAAGGC 728
Query 836 TCTACCAAGATTCCAAGAGGAAAACTTAGACCACAACAAGATTGTTTATGAAAAAGTTTG 895
|||||||||||||||| |||||||||||||||||||||||||| | ||||| || |||||
Sbjct 729 TCTACCAAGATTCCAACAGGAAAACTTAGACCACAACAAGATTCTCTATGAGAAGGTTTG 788
Query 896 TGCAATATCGGAGAAGAAAGGGTGCACTCCTGGACAACTAGCCCTGGCATGGGTTCATCA 955
||||||||| |||||||||| |||| ||| |||||||||||||| || |||||||| ||
Sbjct 789 TGCAATATCAAAGAAGAAAGGATGCAGTCCCGGACAACTAGCCCTCGCCTGGGTTCACCA 848
Query 956 CCAGGGAGATGACGTTTGCCCTATCCCAGGAACCACTAAGATCGAGAACCTCAAACAGAA 1015
||| |||||||| |||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 849 CCAAGGAGATGATGTTTGCCCCATCCCAGGAACCACTAAGATTGAAAACCTCAACCAGAA 908
Query 1016 CATTGGAGCTTTGTCAGTGAAACTCACTCCTGAAGAGATGACTGAGCTTGAGGCCATTGC 1075
|||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 909 CATTGGAGCTTTATCAGTGAAACTCACTCCTGAAGAGATGTCTGAGCTCGAGACCATTGC 968
Query 1076 CCAACCAG-GTTTTGTGAAAGGAGATAGATACA-GT-AACATGATACCAACTTTCAAGAA 1132
|||||||| || | ||||||||||| ||||||| | |||| | | ||||| ||||||||
Sbjct 969 CCAACCAGAGTCT-GTGAAAGGAGAAAGATACATGGCAACA-G-TGCCAACCTTCAAGAA 1025
Query 1133 CGCTGAGACACCACCATTGTCTGCTTGGAAAGCCGCT-TAAAACCGGCTGA-AGTTT 1187
| |||| || ||||| |||||| ||||||| || | | |||||| | || | |||||
Sbjct 1026 CTCTGACACTCCACCGTTGTCTTCTTGGAATGCTG-TGTAAAACTGTCTCAGAGTTT 1081
> Ahg475262 jgi|Araly1|475262|fgenesh2_kg.2__392__AT1G60680.1
Length=1168
Score = 1129 bits (611), Expect = 0.0
Identities = 943/1102 (86%), Gaps = 28/1102 (3%)
Strand=Plus/Plus
Query 103 AAGAGACAGAGATAGTTGTGACAGAGAGATTCATGGCGGAAGCTTGCGGAGTGAGAAGGA 162
|||||| || || | |||||||| | | || |||||| ||||||||| ||||||| ||||
Sbjct 31 AAGAGAGAGTGAGAATTGTGACA-A-AAATCCATGGCTGAAGCTTGCAGAGTGAGGAGGA 88
Query 163 TGAAGCTGGGAAGCCAAGGCCTTGAGGTATCTGCGCAAGGCCTTGGTTGCATGGGCCTCT 222
||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 89 TGAAGCTAGGAAGCCAAGGCCTTGAGGTATCGGCACAAGGCCTTGGTTGCATGGCCCTCT 148
Query 223 CCGCTTTCTACGGTGCTCCCAAGCCGGAAAATGAAGCCATCGCTCTCATCCACCACGCTA 282
||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| ||||
Sbjct 149 CCGCTCGCTACGGTGCTCCCAAGCCGGAAACTGAAGCCATCGCTCTCCTCCACCATGCTA 208
Query 283 TTC-ACTCCGGCGTTACTCTCCTTGACACCTCCGATATCTACGGCCCTGAGACCAATGAA 341
|| |||| || |||||| || |||||||||| || || ||||| ||||||||||| | |
Sbjct 209 -TCAACTCTGGTGTTACTTTCTTTGACACCTCTGACATGTACGGTCCTGAGACCAACG-A 266
Query 342 GTT-CTCCTCGGAAAGGCTCTCAAGGATGGGGTG-AGAGAAAAAGTGGAACTTGCGACCA 399
||| ||||| || |||||||| || ||||| || || || ||||| || ||||||||||
Sbjct 267 GTTGCTCCTAGGCAAGGCTCTGAAAGATGGCTTGAAG-GAGAAAGTAGAGCTTGCGACCA 325
Query 400 AATTTGGAATCAGTTAT-GCAGA-GGGGAAA--AGAGAGGTCAGAGGAGATCCTGAATAT 455
|||||||| || |||| | ||| ||||||| || | |||||||||||||| |||
Sbjct 326 AATTTGGATTC-TTTATAGTAGAGGGGGAAATTTCCGAAATAAGAGGAGATCCTGAGTAT 384
Query 456 GTAAGGGCTGCTTGTGAGGCAAGTTTAAAGAGGCTAGATATTGCCTGCATCGATCTCTAT 515
||||| ||||| |||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 385 GTAAGAGCTGCGTGTGAGGCAAGTGTAAAGAGGTTAGATATTGCCTGCATTGATCTCTAT 444
Query 516 TATCAGCATCGTGTCGATACTCGTGTCCCTATCGAAATCACTATGGGAGAACTGAAGAAG 575
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 445 TATCAGCATCGTGTCGATACTCGTGTTCCTATCGAAATCACTATGGGAGAACTTAAGAAG 504
Query 576 CTGGTTGAAGAGGGTAAAATAAAGTACATTGGTTTGTCTGAAGCCTCTGCCTCAACTATC 635
|| || ||||| ||||||||||| || ||||||||||| ||||| || || |||||||||
Sbjct 505 CTAGTGGAAGAAGGTAAAATAAACTATATTGGTTTGTCAGAAGCTTCAGCTTCAACTATC 564
Query 636 AGAAGAGCACATGCTGTTCACCCAATTACTGCCGTGCAGATAGAATGGTCCTTGTGGACG 695
|||||||| |||||||||||||| || || || ||||| |||||||||||||| ||| ||
Sbjct 565 AGAAGAGCGCATGCTGTTCACCCGATAACCGCTGTGCAAATAGAATGGTCCTTATGGTCG 624
Query 696 AGAGATGTGGAAGAAGAAATCATTCCGACCTGCAGGGAACTTGGGATTGGGATTGTTGCT 755
||||| | ||||||||| |||||||| ||||||||||||||||||||||| || || |||
Sbjct 625 AGAGACGCGGAAGAAGATATCATTCCAACCTGCAGGGAACTTGGGATTGGTATAGTAGCT 684
Query 756 TACAGTCCTCTAGGACGAGGTTTCTTCGCATCTGGACCCAAGCTTGTTGAGAACCTAGAA 815
|| || ||||||||| |||| ||||| ||||| ||||||||||||| |||||| || |||
Sbjct 685 TATAGCCCTCTAGGAAGAGGCTTCTTAGCATCAGGACCCAAGCTTGCTGAGAATCTGGAA 744
Query 816 AAGGATGACTTCAGAAAGGCTCTACCAAGATTCCAAGAGGAAAACTTAGACCACAACAAG 875
| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 745 GACGATGACTTCAGAAAGACTCTACCAAGATTCCAACAGGAAAACTTAGACCACAACAAG 804
Query 876 ATTGT-TTATGAAAAAGTTTGTGCAATATCGGAGAAGAAAGGGTGCACTCCTGGACAACT 934
||| | || ||| ||||| | |||||| || | ||||||||| ||| |||| | ||||||
Sbjct 805 ATTCTCTT-TGAGAAAGTATCTGCAATGTCTGCGAAGAAAGGATGCTCTCCCGCACAACT 863
Query 935 AGCCCTGGCATGGGTTCATCACCAGGGAGATGACGTTTGCCCTATCCCAGGAACCACTAA 994
|||||| |||||||||||||||||||||| ||| |||||||| || ||||||||||| ||
Sbjct 864 AGCCCTTGCATGGGTTCATCACCAGGGAGCTGATGTTTGCCCCATTCCAGGAACCACGAA 923
Query 995 GATCGAGAACCTCAAACAGAACATTGGAGCTTTGTCAGTGAAACTCACT-CCTGAAGAGA 1053
|||||| |||||||| ||||||||||||||||| ||||||||||| ||| || |||||||
Sbjct 924 GATCGAAAACCTCAACCAGAACATTGGAGCTTTATCAGTGAAACTTACTACC-GAAGAGA 982
Query 1054 TGACTGAGCTTGAGGCCATTGCCCAACCAG-GTTTTGTGAAAGGAGATAGATACA-GTAA 1111
|| ||||||| ||| || ||||||||||| || | ||| ||||||| ||||| | |
Sbjct 983 TGTCTGAGCTCGAGTCCCTTGCCCAACCACAGTCT-GTGCAAGGAGAAAGATATATGGCC 1041
Query 1112 -CA-TGATACCAACTTTCAAGAACGCTGAGACACCACCATTGTCTGCTTGGAAAGCCGCT 1169
|| || | ||| ||| ||||||| | || || ||||| |||||| ||||||||||||||
Sbjct 1042 TCAGTG-T-CCACCTT-CAAGAACTCCGACACTCCACCGTTGTCTTCTTGGAAAGCCGCT 1098
Query 1170 TAAAACCGGC-TGA-AGTTTCT 1189
|||||| | | ||| |||||||
Sbjct 1099 TAAAACTG-CATGAGAGTTTCT 1119
> Ahg924984 jgi|Araly1|924984|scaffold_200545.1
Length=535
Score = 102 bits (55), Expect = 7e-21
Identities = 128/160 (80%), Gaps = 17/160 (11%)
Strand=Plus/Plus
Query 134 CATGGCGGAAGCTTGCGGAGTGAGAAGGATGAAGCTGGGAAGCCAAGGCCTTGAGGTATC 193
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Sbjct 20 CATGGC--AA-CTTGCGGAATGAGGAGGATAAAGCTGGGAAGCCAAGGCCTTGAGGTATC 76
Query 194 TGCGCAAGGCCTTGGTTGCATGGGCCTCTCCGCTTTCTACGGTGCTCCCAAGCCGGAAAA 253
||||||||| |||||||| | | || | | ||||| || | ||||||||||
Sbjct 77 GGCGCAAGGCTTTGGTTGC--G--C-TCAC---T----ACGGTCCTTCAAAGCCGGAAAC 124
Query 254 TGAAGCCATCGCTCTCATCCACCACGCTATTCA-CTCCGG 292
|||| ||| |||||| |||| ||||||||| | ||||||
Sbjct 125 TGAAAACATTGCTCTCCTCCATCACGCTATT-ATCTCCGG 163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5