BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60750.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475258 jgi|Araly1|475258|fgenesh2_kg.2__388__AT1G60730.1 573 8e-163
Ahg907392 jgi|Araly1|907392|Al_scaffold_0002_473 549 1e-155
Ahg475262 jgi|Araly1|475262|fgenesh2_kg.2__392__AT1G60680.1 545 2e-154
Ahg475260 jgi|Araly1|475260|fgenesh2_kg.2__390__AT1G60710.1 241 9e-63
> Ahg475258 jgi|Araly1|475258|fgenesh2_kg.2__388__AT1G60730.1
Length=1151
Score = 573 bits (310), Expect = 8e-163
Identities = 547/658 (83%), Gaps = 29/658 (4%)
Strand=Plus/Plus
Query 9 GGAAGCTTGTC-AAGTGCGTAGGATGAAGTTAGGGAGTCAAGGTCTTGAGGTTTCGGCTC 67
||||||||| | |||| | ||||||||| |||| || ||||| |||||||| ||||| |
Sbjct 33 GGAAGCTTG-CGGAGTGAGAAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATCGGCGC 91
Query 68 AGGGACTTGGCTGCATGGGTCTCTCCGAC-TTTTACGGTGCTCCGACA-CCTGAGA-CTA 124
| || ||||| |||||||| ||||||| | |||||||||||||| | | || || | | |
Sbjct 92 AAGGCCTTGGTTGCATGGGCCTCTCCG-CTTTTTACGGTGCTCCCA-AGCCGGAAACCGA 149
Query 125 ACGCCGTCGCTCTCCTCCGTCACGCCA-TCAACGCTGGGGTCACATTT-CTCGATACCTC 182
| ||| |||||||| ||| ||||| | || || | || ||||| ||| || || |||||
Sbjct 150 A-GCCATCGCTCTCATCCACCACGCTATTC-ACTCCGGTGTCAC-TTTCCTTGACACCTC 206
Query 183 CGACATCTACGGTCCCGAGACAAACGAGCTGCTTCTTGGAAAGGCTTTGAAAGATGGTTT 242
||||| |||||||| || || |||||| | ||||| | |||||| | || ||||| |
Sbjct 207 TGACATTTACGGTCCTGAAACCAACGAGGTTCTTCTCAGCAAGGCTCTCAAGGATGGAGT 266
Query 243 GAGAGATAAAGTGGAA-TTAGCGA-CAAAGTTTGGGATCACTGCTTCTGAAGATGGAAAA 300
|||||| ||||||||| || |||| |||| | ||| |||| | | || ||| || |||
Sbjct 267 GAGAGAAAAAGTGGAACTT-GCGACCAAA-TATGGAATCA--G-GTATGCAGAGGGGAAA 321
Query 301 TTTG-GTTTCAGGGGAGATCCAGAGTATGTAAGGA-TTGCTTGTGAAGCAAGCTTAAAGC 358
| | |||| | ||||||||| | ||||||| || ||| ||||| || || ||||||
Sbjct 322 GTAGAGTTT-AAGGGAGATCCTGCTTATGTAA-GAGCTGCGTGTGAGGCTAGTTTAAAGA 379
Query 359 GTCTTGGTGTAACCTGCATTGATCTTTATTACCAGCATCGAATTGATACCACTC-TG-CC 416
| || | ||| |||||||||||||||||||| ||||||||||||||| |||| || ||
Sbjct 380 GGCTAGATGTTACCTGCATTGATCTTTATTATCAGCATCGAATTGAT---ACTCGTGTCC 436
Query 417 C-ATCGAAATCACGATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGCAAAATAAAGTACA 475
| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 437 CTATCGAAATCACTATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATA 496
Query 476 TCGGTTTGTCAGAAGCTTCGGCTTCAACTATAAGAAGAGCACATGCTGTTCACCCGATAA 535
||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 497 TCGGTTTGTCAGAAGCTTCAGCTTCAACTATCAGACGAGCACATGCTGTTCACCCGATAA 556
Query 536 CCGCTGTGCAAATAGAATGGTCCTTATGGTCGAGAGACGTGGAAGAAGATATCATTCCAA 595
||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 557 CCGCTATGCAAATTGAATGGTCCTTATGGTCGAGAGATGTGGAAGAAGATGTCATTCCAA 616
Query 596 CCTGCAGGGAACTTGGGATTGGAATTGTAGCTTATAGCCCTCTAGGAAGAGGCTTCTT 653
|||||||||||||||| ||||||||||| ||||| || |||||||||||||| |||||
Sbjct 617 CCTGCAGGGAACTTGGAATTGGAATTGTTGCTTACAGTCCTCTAGGAAGAGGTTTCTT 674
Score = 219 bits (118), Expect = 4e-56
Identities = 269/339 (79%), Gaps = 22/339 (6%)
Strand=Plus/Plus
Query 659 TACCAAGATTCCAACAGGAGAATC-TAGAAAACAACAAGATTCTCTACGAGAAAG-TCCA 716
||||||||||||||||||| || | |||| ||||||||||||||| ||||||| | |
Sbjct 731 TACCAAGATTCCAACAGGA-AAACTTAGACCACAACAAGATTCTCTTTGAGAAAGTTTC- 788
Query 717 AGCGATGGC-GACAAAGAAAAGTTGCACTCCTGCACAACTAGCTCTAGCGTGGGTTCACC 775
|| ||| | || |||||| | |||||||| || |||||||| || || |||||||| |
Sbjct 789 TGCAATGTCGGA-GAAGAAAGGGTGCACTCCCGCGCAACTAGCCCTTGCATGGGTTCATC 847
Query 776 ATCAAGGAGATGATGTATGTCCAATTCCAGGAACCTCCAAGATCCAAAACCTCAACCAAA 835
| || ||||||||||| || || || ||||||||| | ||||| ||||||| ||||| |
Sbjct 848 ACCAGGGAGATGATGTTTGCCCCATCCCAGGAACCACTAAGATTGAAAACCTTAACCAGA 907
Query 836 ACATTGGAGCTTTATCCGTGAAGCTCACTCCTGAAGAGATGGT-TGAGCTTGAAG-CCAT 893
|||||||||||||||| ||||| || ||||| |||||||| || |||||| | || || |
Sbjct 908 ACATTGGAGCTTTATCAGTGAAACTTACTCCCGAAGAGAT-GTCTGAGCTCG-AGTCCCT 965
Query 894 TGCTCAACCGGATTTC-GTGAAAGGTGAACGGTATGACA--A-CAACATGGTTAC-TTAC 948
||| ||||| || || |||||||| ||| | || || | || | || || || |
Sbjct 966 TGCCCAACCAGA-GTCTGTGAAAGGAGAA-AG-AT-CCATTAGCATCCTGACCACGTT-C 1020
Query 949 AAAG-ACTCAGAGACTCCACCATTGTCTTCTTGGAAAGC 986
||| |||| |||||||||||||||||||||||||||||
Sbjct 1021 -AAGAACTCTGAGACTCCACCATTGTCTTCTTGGAAAGC 1058
> Ahg907392 jgi|Araly1|907392|Al_scaffold_0002_473
Length=1062
Score = 549 bits (297), Expect = 1e-155
Identities = 325/339 (96%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 655 GGTTTACCAAGATTCCAACAGGAGAATCTAGAAAACAACAAGATTCTCTACGAGAAAGTC 714
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 724 GGTCTACCAAGATTCCAACAGGAGAATCTAGACAACAACAAGATTCTCTACGAGAAAGTC 783
Query 715 CAAGCGATGGCGACAAAGAAAAGTTGCACTCCTGCACAACTAGCTCTAGCGTGGGTTCAC 774
|||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 784 CAAGAGATGGCGACAAAGAAAAGCTGCACTCCTGCACAACTAGCTCTAGCATGGGTTCAC 843
Query 775 CATCAAGGAGATGATGTATGTCCAATTCCAGGAACCTCCAAGATCCAAAACCTCAACCAA 834
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 844 CACCAAGGAGATGATGTCTGTCCTATTCCAGGAACCTCCAAGATCCAAAACCTCAACCAG 903
Query 835 AACATTGGAGCTTTATCCGTGAAGCTCACTCCTGAAGAGATGGTTGAGCTTGAAGCCATT 894
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AACATTGGAGCTTTATCAGTGAAGCTCACTCCTGAAGAGATGGTTGAGCTTGAAGCCATT 963
Query 895 GCTCAACCGGATTTCGTGAAAGGTGAACGGTATGACAACAACATGGTTACTTACAAAGAC 954
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 964 GCTCGACCGGATTTCGTGAAAGGTGAACGATATGACAACAACATGGTTACTTACAAAGAC 1023
Query 955 TCAGAGACTCCACCATTGTCTTCTTGGAAAGCAAGATAA 993
||||||||||||||||||||||||||||||| || ||||
Sbjct 1024 TCAGAGACTCCACCATTGTCTTCTTGGAAAGAAAAATAA 1062
Score = 512 bits (277), Expect = 2e-144
Identities = 326/349 (93%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 82 ATGGGTCTCTCCGACTTTTACGGTGCTCCGACACCTGAGACTAACGCCGTCGCTCTCCTC 141
||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGTCTCTCCGCCTTCTACGGTGCTCCGACACCTGAGACTAACGCCGTGGCTCTCCTC 60
Query 142 CGTCACGCCATCAACGCTGGGGTCACATTTC-TCGATACCTCCGACATCTACGGTCCCGA 200
||||||||||| ||||| || || ||| ||| | ||||| ||||||||||||||||||||
Sbjct 61 CGTCACGCCATTAACGCCGGCGTTACA-TTCTTGGATACTTCCGACATCTACGGTCCCGA 119
Query 201 GACAAACGAGCTGCTTCTTGGAAAGGCTTTGAAAGATGGTTTGAGAGATAAAGTGGAATT 260
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 120 GACAAACGAGCTGCTTCTTGGAAAGGCTTTGAAAGATGGGTTGAGGGATAAAGTGGAATT 179
Query 261 AGCGACAAAGTTTGGGATCACTGCTTCTGAAGATGGAAAATTTGGTTTCAGGGGAGATCC 320
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGCGACAAAATTTGGGATCACTGCTTCTGAAGATGGAAAATTTGGTTTCAGGGGAGATCC 239
Query 321 AGAGTATGTAAGGATTGCTTGTGAAGCAAGCTTAAAGCGTCTTGGTGTAACCTGCATTGA 380
||||||||| || | ||||||||||||||||||| |||| ||||||| |||| ||||||
Sbjct 240 AGAGTATGTGAG--T-GCTTGTGAAGCAAGCTTAAGGCGTATTGGTGTTACCTCCATTGA 296
Query 381 TCTTTATTACCAGCATCGAATTGATACCACTCTGCCCATCGAAATCACG 429
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 TCTTTATTACCAGCATCGAATTAATACCACTCTGCCCATCGAAATCACG 345
Score = 278 bits (150), Expect = 7e-74
Identities = 166/174 (95%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 430 ATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGCAAAATAAAGTACATCGGTTTGTCAGAA 489
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 379 ATTGGAGAGCTGAAGAAGCTAGTGGAAGAAGGGAAAATAAAGTATATCGGTTTGTCAGAA 438
Query 490 GCTTCGGCTTCAACTATAAGAAGAGCACATGCTGTTCACCCGATAACCGCTGTGCAAATA 549
||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 439 GCTTCAGCTTCAACTATCAGAAGAGCACACGCTGTTCATCCGATAACCGCTGTGCAAATA 498
Query 550 GAATGGTCCTTATGGTCGAGAGACGTGGAAGAAGATATCATTCCAACCTGCAGG 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GAATGGTCTTTATGGTCGAGAGACGTGGAAGAAGATATCATTCCAACCTGCAGG 552
> Ahg475262 jgi|Araly1|475262|fgenesh2_kg.2__392__AT1G60680.1
Length=1168
Score = 545 bits (295), Expect = 2e-154
Identities = 545/662 (82%), Gaps = 32/662 (5%)
Strand=Plus/Plus
Query 10 GAAGCTTGTCA-AGTGCGTAGGATGAAGTTAGGGAGTCAAGGTCTTGAGGTTTCGGCTCA 68
|||||||| || |||| | ||||||||| |||| || ||||| |||||||| ||||| ||
Sbjct 67 GAAGCTTG-CAGAGTGAGGAGGATGAAGCTAGGAAGCCAAGGCCTTGAGGTATCGGCACA 125
Query 69 GGGACTTGGCTGCATGGGTCTCTCCGACT-TTTACGGTGCTCCGACA-CCTGAGACT-AA 125
|| ||||| ||||||| ||||||| || ||||||||||| | | || || ||| ||
Sbjct 126 AGGCCTTGGTTGCATGGCCCTCTCCG-CTCGCTACGGTGCTCCCA-AGCCGGAAACTGAA 183
Query 126 CGCCGTCGCTCTCCTCCGTCACGCCATCAACGCTGGGGTCACATTTC-TCGATACCTCCG 184
||| |||||||||||| || || |||||| |||| || || |||| | || ||||| |
Sbjct 184 -GCCATCGCTCTCCTCCACCATGCTATCAACTCTGGTGTTAC-TTTCTTTGACACCTCTG 241
Query 185 ACATCTACGGTCCCGAGACAAACGAGCTGCTTCTTGGAAAGGCTTTGAAAGATGGTTTG- 243
|||| |||||||| ||||| |||||| |||| || || |||||| |||||||||| |||
Sbjct 242 ACATGTACGGTCCTGAGACCAACGAGTTGCTCCTAGGCAAGGCTCTGAAAGATGGCTTGA 301
Query 244 AGAGATAAAGTGGA-ATTAGCGA-CAAAGTTTGGGATCACTGCTTCT-GAAGA-TGGAAA 299
|| || ||||| || || |||| |||| ||| |||| || || | | ||| || ||
Sbjct 302 AG-GAGAAAGTAGAGCTT-GCGACCAAA-TTT-GGAT-TCT--TTATAGTAGAGGGGGAA 354
Query 300 ATTT--GGTTTCAGGGGAGATCCAGAGTATGTAAGGA-TTGCTTGTGAAGCAAGCT-TAA 355
|||| | | || |||||||| |||||||||| || ||| ||||| ||||| | |||
Sbjct 355 ATTTCCGAAATAAGAGGAGATCCTGAGTATGTAA-GAGCTGCGTGTGAGGCAAG-TGTAA 412
Query 356 AG-CGTCTTGGTGTAACCTGCATTGATCTTTATTACCAGCATCGAATTGATACCAC-TCT 413
|| || | | | | ||||||||||||| ||||| |||||||| | |||| | | | |
Sbjct 413 AGAGGT-TAGATATTGCCTGCATTGATCTCTATTATCAGCATCGTGTCGATA-CTCGTGT 470
Query 414 GCCCATCGAAATCACGATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGCAAAATAAAGTA 473
|| ||||||||||| || ||||| || ||||||||||| |||||||| |||||||| ||
Sbjct 471 TCCTATCGAAATCACTATGGGAGAACTTAAGAAGCTAGTGGAAGAAGGTAAAATAAACTA 530
Query 474 CATCGGTTTGTCAGAAGCTTCGGCTTCAACTATAAGAAGAGCACATGCTGTTCACCCGAT 533
|| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 531 TATTGGTTTGTCAGAAGCTTCAGCTTCAACTATCAGAAGAGCGCATGCTGTTCACCCGAT 590
Query 534 AACCGCTGTGCAAATAGAATGGTCCTTATGGTCGAGAGACGTGGAAGAAGATATCATTCC 593
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 591 AACCGCTGTGCAAATAGAATGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTCC 650
Query 594 AACCTGCAGGGAACTTGGGATTGGAATTGTAGCTTATAGCCCTCTAGGAAGAGGCTTCTT 653
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 651 AACCTGCAGGGAACTTGGGATTGGTATAGTAGCTTATAGCCCTCTAGGAAGAGGCTTCTT 710
Query 654 AG 655
||
Sbjct 711 AG 712
> Ahg475260 jgi|Araly1|475260|fgenesh2_kg.2__390__AT1G60710.1
Length=1197
Score = 241 bits (130), Expect = 9e-63
Identities = 267/333 (80%), Gaps = 10/333 (3%)
Strand=Plus/Plus
Query 659 TACCAAGATTCCAACAGGAGAATC-TAGAAAACAACAAGATTCTCTACGAGAAAGTCCAA 717
|||||||||||||| | || || | |||| ||||||||||| | || ||||| ||
Sbjct 778 TACCAAGATTCCAAGA-GAAAAACTTAGACCACAACAAGATTGTTTATGAGAAGGTTTGT 836
Query 718 GCGATGGC-GACAAAGAAAAGTTGCACTCCTGCACAACTAGCTCTAGCGTGGGTTCACCA 776
|| || | || ||||||| | |||||||||||||| ||||||| || |||||||||||
Sbjct 837 GCAATCTCGGA-AAAGAAAGGATGCACTCCTGCACAGTTAGCTCTGGCATGGGTTCACCA 895
Query 777 TCAAGGAGATGATGTATGTCCAATTCCAGGAACCTCCAAGATCCAAAACCTCAACCAAAA 836
|| ||||||||||| ||||| || ||||||||| | |||||| ||||||||||||||||
Sbjct 896 CCAGGGAGATGATGTTTGTCCCATCCCAGGAACCACTAAGATCGAAAACCTCAACCAAAA 955
Query 837 CATTGGAGCTTTATCCGTGAAGCTCACTCCTGAAGAGATGGTTGAGCTTGAAGCCATTGC 896
||||||||||||| | ||||| ||||| || ||||||||| ||||||||| ||||||||
Sbjct 956 CATTGGAGCTTTAGCAGTGAAACTCACACCCGAAGAGATGACTGAGCTTGAGGCCATTGC 1015
Query 897 TCAACC-GGAT-TTCGTGAAAGGTGAACGGTATGACAACAACATGGTTACTTACAAAGA- 953
||||| || | || |||||||| ||| | || | | || || |||| ||| ||
Sbjct 1016 CCAACCAGG-TGTT-GTGAAAGGGGAAAGATACGGTAGCATGATACCCACTTTCAA-GAA 1072
Query 954 CTCAGAGACTCCACCATTGTCTTCTTGGAAAGC 986
||| || |||||||| |||||||||||||||||
Sbjct 1073 CTCTGACACTCCACCGTTGTCTTCTTGGAAAGC 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5