BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60760.1
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924977 jgi|Araly1|924977|scaffold_200538.1 749 0.0
> Ahg924977 jgi|Araly1|924977|scaffold_200538.1
Length=532
Score = 749 bits (405), Expect = 0.0
Identities = 466/495 (94%), Gaps = 6/495 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAGTCGCAACACAATCCAGATGTACCTCACGACTGTTGTCGCAATCGTGATCCTC 60
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 21 ATGGCGAGCCGCAACACAATCCAGATGTACCTCACGACTGTCGTCGCAATCGTGATCCTC 80
Query 61 CTGGCGGCAAGCCAAGCCACGGAAGCTCGTTTCACGAGCCTATGCGCTCAAACCGCATAC 120
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 81 CTAGCGGCAAGCCAAGCCACGGAAGCGCGTTTCACGAGCCTATGTGCTCAAACCGCATAC 140
Query 121 CCAACCTTGTGTCGACCGCTGGTGAAAGGGCCAAACCCGAGACGAGCCACACACAGCACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 141 CCAACCTTGTGTCGACCGCTGGTGAAAGGGCCAAACCCGAGACGAGCCACACACAACACG 200
Query 181 ATCCGAGCCTTGGAGGCTAAGACGAAATTGGCAATTACAGACT-CTGCGAGATTCAAGAG 239
|| ||||||||||||||||||||||||||||| ||||||| || ||||||||||||| |
Sbjct 201 ATTCGAGCCTTGGAGGCTAAGACGAAATTGGCCATTACAG-CTTCTGCGAGATTCAAAAA 259
Query 240 CGGAAATCCAACTGTTGCAATTTGCTATGCGACTCTTGTGGATGCATCCTTCAATCTT-A 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 260 CGGAAATCCAACTGTTGCAATTTGCTATGCGACTCTTGTGGATGCATCCTTCAATCTTGA 319
Query 299 GGAGGGCAAGGACTAGCATTAGGAAAAGAAATGTTATGAT-GCTAAAAATGTTTTTGACC 357
| | | |||||| ||||| ||||| ||||||||| || | ||||||||||| |||||||
Sbjct 320 GAACG-CAAGGAAGAGCATAAGGAAGAGAAATGTTTTG-TCGCTAAAAATGTATTTGACC 377
Query 358 GCGGCTGTGTCAGATTATGGTGTTTGTGTCAACGGGTTCATAGATTCACATCAAGTCAAC 417
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 GCGGCTGTATCAGATTACGGTGTTTGTGTCAACGGGTTCATAGATTCACATCAAGTCAAC 437
Query 418 ACTCTTCAGAACGATGTAGATGAGCTCAGGAAGATGGGAACTAACTGCTTGTTGCTTGCT 477
|| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 438 ACCCTTCAGAACGCTGTAGATGAGCTCAGGAAGATGGGAACTAACTGTTTGTTGCTTGCT 497
Query 478 ACATTGATAAGATGA 492
|||||||||||||||
Sbjct 498 ACATTGATAAGATGA 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17856815652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5