BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60770.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475255 jgi|Araly1|475255|fgenesh2_kg.2__385__AT1G60770.1 2756 0.0
> Ahg475255 jgi|Araly1|475255|fgenesh2_kg.2__385__AT1G60770.1
Length=1797
Score = 2756 bits (1492), Expect = 0.0
Identities = 1706/1808 (94%), Gaps = 19/1808 (1%)
Strand=Plus/Plus
Query 1 GACAGTGAATTAGGGTTTTACTCAAAAAACCTTCTCGTTGTCGTTGTTTACTGCTCCGAC 60
||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||
Sbjct 1 GACAGTGAATTAGGGTTTTACTC-AAAAACCTCCTCGTTGTCGTTGCTCACTGCTCCGAC 59
Query 61 GAGAAAATGGCGATGCGACATTTGAGCCGATCGAGAGACGTTACAAAGAGATCGACAAAG 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 60 GAGAAAATGGCGATGCGACATTTGAGCCGATCGAGAGACGTCACAAAGAGATCGACGAAG 119
Query 121 AAGTACATCGAAGAACCTCTGTACAATCGCCTCTTCAAAGATGGTGGTACAGAGGTCAAA 180
|||||||||||||||||||| ||| |||| |||||||||||||| || ||||||||||||
Sbjct 120 AAGTACATCGAAGAACCTCTTTACCATCGACTCTTCAAAGATGGCGGCACAGAGGTCAAA 179
Query 181 GTTCGACAGCAGCTTAATCAGTTCCTCAAAGGCACTAAACACGTCTTCAAATGGGAGGTC 240
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 180 GTTCGACAGCAGCTGAATCAGTTCCTTAAAGGCACTAAACACGTCTTCAAATGGGAAGTC 239
Query 241 GGCGATACGATCAAGAAACTCCGAAATCGCGGCCTCTATTACCCAGCTCTCAAGCTATCT 300
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GGAGATACGATCAAGAAACTCCGAAATCGGGGCCTCTATTACCCAGCTCTCAAGCTATCT 299
Query 301 GAAGTTATGGAAGAGAGAGGTATGAACAAGACAGTGAGTGATCAAGCAATCCATCTTGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAGTTATGGAAGAGAGAGGTATGAACAAGACAGTGAGTGATCAAGCAATCCATCTTGAT 359
Query 361 CTTGTTGCTAAAGCTCGTGAAATTACTGCTGGGGAGAATTATTTTGTTGATCTTCCGGAA 420
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTGTTGCTAAAGCTCGGGGAATTACTGCTGGGGAGAATTATTTTGTTGATCTTCCGGAA 419
Query 421 ACATCTAAGACGGAACTCACGTATGGGTCTCTTTTGAACTGTTACTGCAAGGAGTTGTTG 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 ACATCTAAGACGGAACTCACGTATGGATCTCTTTTGAACTGTTACTGCAAGGAGTTGTTG 479
Query 481 ACAGAGAAAGCGGAAGGTTTGCTGAATAAGATGAAAGAGCTCAACATTACTCCTAGTTCC 540
|| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||||
Sbjct 480 ACGGAGAAAGCGGAAGGTTTACTTAACAAGATGAAAGAGCTCAATATTACTCCTAGTTCC 539
Query 541 ATGTCTTATAACAGCCTCATGACTCTTTACACCAAGACAGGTGAGACTGAGAAAGTTCCG 600
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 ATGTCTTATAACAGCCTCATGACTCTTTACACCAAGACAGGTCAGACTGAGAAAGTTCCA 599
Query 601 GCGATGATTCAAGAATTGAAGGCGGAGAATGTGATGCCGGATTCGTACACTTATAATGTC 660
|||||||| ||||||||||||||||||||||| ||||||||||| ||||| || ||||||
Sbjct 600 GCGATGATCCAAGAATTGAAGGCGGAGAATGTAATGCCGGATTCATACACGTACAATGTC 659
Query 661 TGGATGAGGGCTTTGGCTGCTACTAATGATATTTCTGGTGTTGAGAGAGTCATTGAAGAG 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 TGGATGAGGGCTTTGGCTACTACTAATGATATTTCTGGTGTTGAGAGAGTCATCGAAGAG 719
Query 721 ATGAATAGAGATGGTAGAGTTGCTCCGGATTGGACTACGTATAGCAATATGGCATCGATA 780
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 720 ATGAATAGAGATGGTAGAGTTGCTCCAGATTGGACTACGTATAGCAATATGGCATCTATA 779
Query 781 TATGTTGATGCTGGACTGTCTCAGAAAGCTGAGAAGGCTCTTCAGGAACTGGAGATGAAA 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 TATGTTGATGCTGGACTGTCTCAGAAAGCTGAGAAGGCCCTTCAGGAACTGGAGATGAAA 839
Query 841 AACACGCAACGGGATTTTACGGCATATCAGTTTCTTATTACTTTGTATGGACGTCTGGGG 900
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 840 AACACACAACGGGATTTTACGGCGTATCAGTTTCTGATTACTTTGTATGGACGTCTGGGA 899
Query 901 AAGCTGACTGAAGTTTACAGAATTTGGCGTTCGTTGAGGCTGGCTATTCCGAAAACCTCA 960
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 900 AAACTGACTGAAGTTTACAGGATTTGGCGTTCCTTGAGGCTGGCTATTCCGAAAACCTCA 959
Query 961 AATGTAGCTTATCTAAACATGATACAAGTGCTGGTCAAGTTGAATGATTTACCTGGTGCA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 AATGTAGCTTATCTAAACATGATACAAGTGCTGGTCAAGTTGAATGATTTACCGGGTGCT 1019
Query 1021 GAGACATTGTTCAAGGAATGGCAAGCTAACTGTTCTACTTATGACATCAGGATTGTGAAT 1080
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 GAGACACTGTTCAAGGAATGGCAAGCTAACTGTTCTACTTATGACATCAGGATTGTAAAT 1079
Query 1081 GTGTTGATTGGAGCTTATGCTCAAGAGGGTCTAATCCAGAAAGCAAATGAGCTCAAGGAG 1140
||||||||||||||||||||| |||||||||| ||| | |||||||| ||||||||||||
Sbjct 1080 GTGTTGATTGGAGCTTATGCTAAAGAGGGTCTCATCGAAAAAGCAAAAGAGCTCAAGGAG 1139
Query 1141 AAAGCTCCCAGAAGAGGTGGAAAG-CTCAATGCTAAAACATGGGAGATCTTCATGGATTA 1199
|||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||
Sbjct 1140 AAAGCTCCCAGAAGAGGTGGCAAGGC-CAATGCTAAAACCTGGGAGATCTTCATGGATTA 1198
Query 1200 CTATGTAAAGAGCGGTGATATGGCTCGA-GCACTCGAATGCATGTCAAAGGCAGTCTCCA 1258
|||||||||||||||||||||||||| | ||||||||||| ||||| |||||||| || |
Sbjct 1199 CTATGTAAAGAGCGGTGATATGGCTC-ACGCACTCGAATGTATGTCTAAGGCAGTTTCTA 1257
Query 1259 TCGGCAAAGGAGATGGTGGCAAGTGGCTACCGTCACCTGAAACAGTCAGAGCTTTGATGA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1258 TCGGCAAAGGAGATGGTGGCAAGTGGCTACCGTCACCTGAAACAGTCAGAACTTTGATGA 1317
Query 1319 GCTATTTCGAGCAAAAGAAAGATGTTAATGGAGCTGAGAATTTGTTGGAGATTTTAAAGA 1378
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1318 GCTATTTCGAGCAAAAGAAAGATGTTAATGGAGCTGAGAATTTGGTGGAGATTTTAAAGA 1377
Query 1379 ATGGAACAGACAACATAGGCGCAGAAATATTTGAACCATTGATAAGAACATATGCAGCAG 1438
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1378 ATGGAACAGATAACATAGGCGCAGAAATCTTTGAGCCATTGATAAGAACATATGCAGCAG 1437
Query 1439 CGGGAAAGAGTCACCCTGCTATGCGACGGCGCCTGAAGATGGAAAACGTGGAGGTTAATG 1498
||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1438 CGGGAAAGAGTCATCCTGCAATGAGCCGGCGCCTGAAGATGGAAAACGTGGAGGTTAATG 1497
Query 1499 AAGCGACAAAGAAGCTACTCGATGAAGTATCTCAGGATGTGTGAGGTCTGTTCCATCTCT 1558
||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1498 AAGCGACAAAGAAGCTACTTGATGAAGTATCTCAGGAGGTGTGAGGTCTGTACCATCTCT 1557
Query 1559 TTCTCCTTCATTATT-CACTTCA-GACAA-AGACATCATTAGTCGTGATAGGGTCACTTG 1615
||| ||||||||||| | ||||| | | | | |||| |||||||||| ||||| |||| |
Sbjct 1558 TTCCCCTTCATTATTTC-CTTCAAG-CGACACACATTATTAGTCGTGTTAGGGGCACTGG 1615
Query 1616 CATTCTCACAGCTCTGTCTCTTATTGGTAATaaaaaaaTAGGCTCTGAATCGGCAAAATC 1675
| || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1616 CGTTGTCACAGCTCTGTTTCTTATTGGTAATAAAAA--TAGGCTCTGAATCGGCAAAATC 1673
Query 1676 AATTGTATGGGTCTGTTTTACTTTCACCGTAGACTGTTTGTTCATGTTTTTGTGAATTGT 1735
||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1674 AATCGTATGGGTCTGTTTTACTT-CACCTTAGACTGTTTGTTCATGTTTTTGTGAATTGT 1732
Query 1736 TTTTGGT-TTAGCTTGGATTTACAGTTGAGACAGCTCTCACAATGTAATCCCt-ttt-tt 1792
|| ||| |||||||||||||||||||||||||||||||||||||||| || | ||| ||
Sbjct 1733 TTC-GGTCTTAGCTTGGATTTACAGTTGAGACAGCTCTCACAATGTAAGCC-TATTTGTT 1790
Query 1793 tGGAGATC 1800
|| |||||
Sbjct 1791 TG-AGATC 1797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5