BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60780.1
Length=1897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475254 jgi|Araly1|475254|fgenesh2_kg.2__384__AT1G60780.1 2852 0.0
Ahg919872 jgi|Araly1|919872|scaffold_101153.1 1666 0.0
> Ahg475254 jgi|Araly1|475254|fgenesh2_kg.2__384__AT1G60780.1
Length=1845
Score = 2852 bits (1544), Expect = 0.0
Identities = 1701/1774 (96%), Gaps = 22/1774 (1%)
Strand=Plus/Plus
Query 47 TAAA-TTCTTCCGtttttttttt-tAATCCAACCACAAGGATCGATAACGAAATCATCAG 104
|||| |||||||||||||||||| | |||||||||||||| ||||||| ||||||||||
Sbjct 22 TAAACTTCTTCCGTTTTTTTTTTCT-CTCCAACCACAAGGAACGATAACAAAATCATCAG 80
Query 105 ATCGCCAGaaaaaaaaaaa-aaaTTGCGAAATGGAGAATCTGAGC-T-G-CAGATCTGCG 160
||||||||||||||||||| |||||||||||||||||||||||| | | |||||||||
Sbjct 81 ATCGCCAGAAAAAAAAAAACCAATTGCGAAATGGAGAATCTGAGCTTCGAGAGATCTGCG 140
Query 161 TCAATCTCCATCTAGATGTTGTTGCTACTTCTTC--CTCTATAGAACCATAATTTCATCA 218
|||||||||||||||||| || ||||||||||| ||| |||||| |||||||||||||
Sbjct 141 TCAATCTCCATCTAGATG-TG--GCTACTTCTTCGTCTCCATAGAAGCATAATTTCATCA 197
Query 219 GATCTCGCTGATTAATCATCCCCATTTGGATCTGA-TCGAAACTCTTAGGGAAGAACATG 277
||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||
Sbjct 198 GATCTCGCTGATTAATCATCCGCATTTGGATCTGATTCCAAACTCCTAGGGAAGAACATG 257
Query 278 GCAGGAGCTGCCTCCGCGCTGTTTCTGCTTGATATCAAGGGACGCGTTCTCGTCTGGCGT 337
|||||||| ||||| || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 258 GCAGGAGCGGCCTCGGCTCTGTTTCTGCTCGATATCAAGGGACGTGTTCTCGTCTGGCGT 317
Query 338 GATTATCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAAGCTCATCGAG 397
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GATTACCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAAGCTCATCGAG 377
Query 398 AAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGGGTGACTTATATG 457
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 378 AAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGTGTTACTTATATG 437
Query 458 TTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGGCAGAATTGTAATGCTGCC 517
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 438 TTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGACAGAATTGTAATGCTGCC 497
Query 518 AGTCTTCTCTTCTTTCTTCACCGCGTTGTCGATGTTTTCAAGCATTACTTCGAGGAGTTA 577
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 498 AGTCTTCTCTTCTTTCTTCACCGTGTAGTCGATGTTTTCAAGCATTACTTCGAGGAGTTA 557
Query 578 GAAGAGGAATCATTGAGGGATAACTTTGTGGTAGTGTATGAGCTACTTGACGAGATGATG 637
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 558 GAAGAGGAATCATTGAGGGATAACTTTGTGGTTGTGTATGAGCTACTTGACGAGATGATG 617
Query 638 GACTTTGGTTACCCTCAGTATACCGAAGCAAGAATTCTCAGTGAATTCATCAAGACTGAT 697
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 618 GACTTTGGTTACCCTCAGTATACCGAAGCAAGAATCCTCAGTGAATTCATCAAAACTGAT 677
Query 698 GCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACGAATGCTGTCTCCTGG 757
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 678 GCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACAAATGCTGTCTCCTGG 737
Query 758 AGGAGTGAGGGAATACAGTACAAGAAGAATGAAGTTTTCTTGGATGTTATTGAGAATGTA 817
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 738 AGGAGTGAGGGAATACAGTACAAGAAAAATGAAGTTTTCTTGGATGTAATTGAGAATGTA 797
Query 818 AATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTGGAGCGCTGAAG 877
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 798 AATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTGGAGCCCTGAAG 857
Query 878 ATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACTGAATGATAGAGTATTG 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACTGAATGATAGAGTATTG 917
Query 938 CTGGAAGCGCAGGGACGAGCAACTAAGGGAAAAGCCATTGATTTGGAGGACATCAAATTT 997
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 918 CTGGAAGCGCAGGGACGAGCAACAAAGGGAAAAGCCATTGATTTAGAGGACATCAAATTT 977
Query 998 CATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCTTTCATACCACCT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 CATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCTTTCATACCACCT 1037
Query 1058 GATGGGGCTTTTGATCTGATGACATATAGACTCAGCACTCAGGTAAAGCCACTTATATGG 1117
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1038 GATGGGGCTTTTGATCTGATGACATATAGACTCAGTACTCAGGTAAAACCTCTTATATGG 1097
Query 1118 GTGGAAGCACAAATAGAAAGTCATTCAAGAAGTCGTGTTGAGATGCTCATAAAAGCTAGA 1177
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1098 GTGGAAGCGCAAATAGAAAGTCATTCCAGAAGTCGTGTTGAGATGCTTATAAAAGCTAGA 1157
Query 1178 AGTCAGTTCAAGGAACGAAGCACCGCAACGAACGTTGAGATTGAGTTGCCTGTACCAACC 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AGTCAGTTCAAGGAACGAAGCACCGCAACGAACGTTGAGATTGAGTTGCCTGTACCAACC 1217
Query 1238 GATGCATCTAACCCCACCGTTAGGACATCTCTAGGGTCTGCCTCTTATGCTCCTGAAAAA 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GATGCATCTAACCCCACCGTTAGGACATCTCTAGGGTCTGCCTCTTATGCTCCTGAAAAA 1277
Query 1298 GATGCGTTAGTCTGGAAAATCAAATCTTTCCCGGGGAACAAGGAGTACATGTTAAGGGCA 1357
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1278 GATGCGTTAGTCTGGAAAATCAAATCTTTCCCCGGGAACAAGGAGTACATGTTAAGGGCA 1337
Query 1358 GAGTTCCATCTTCCAAGTATCACTGCAGAGGAAGCAACTCCTGAGCGAAAGGCTCCTATC 1417
|||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 1338 GAGTTCCATCTTCCCAGTATTACTGCAGAGGAAGCAACACCTGAGCGAAAAGCTCCTATC 1397
Query 1418 CGTGTCAAATTTGAGATCCCTTATTTCACTGTTTCAGGGATTCAGGTTCGGTACCTAAAG 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 CGTGTCAAATTTGAGATCCCTTATTTCACTGTTTCAGGGATTCAGGTTCGGTACCTAAAG 1457
Query 1478 ATTATTGAGAAGAGTGGGTACCAAGCACTTCCATGGGTGAGATACATAACCATGGCTGGT 1537
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 ATAATTGAGAAGAGCGGGTACCAAGCACTTCCATGGGTGAGATACATAACCATGGCTGGT 1517
Query 1538 GAGTACGAACTAAGACTCGTGTAATGCACATTTAGTTTCATCGTCTATGTCAATTGTGAT 1597
|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 1518 GAGTACGAACTAAGACTCGTGTAAGGCTCATTTAGTTTCATCGTCTATGTCA-TTGTGAT 1576
Query 1598 TCCCACATCCCTCAAGG-AATTGCCTGAATCAAA-GAAGCAAAACGAAACAGGACAAAAG 1655
|||||||| |||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1577 TCCCACATTCCTCCGGGGAATTGCCTGAATCAAATGAAGCAAAACGAAACAGGACAAAAG 1636
Query 1656 TAGAGGGAAAAG--AAAACGTTTTGAAACATTTTAGCTGATCAAATTTTCCTTTAATTTG 1713
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1637 TAGAG--AAAAGCGAAAACGTTTTAAAACATTTTAGCTGATCAAATTTTCCTTTAATTTG 1694
Query 1714 TTTTAGAAGCCATATTCTTGTGAATTTGTCTTTATGGTGATTCTATTTTATTTTACATGA 1773
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1695 TTTTAGAAGCCATATTCTTGTGAATTTGTCTTTATGGTGATTTTATTTTATTTTACATGA 1754
Query 1774 GGCTCTCTGTAACCTTTCACGACATGGTT-CATT 1806
|||||| ||||||||| |||||||||||| ||||
Sbjct 1755 GGCTCTTTGTAACCTT-CACGACATGGTTACATT 1787
> Ahg919872 jgi|Araly1|919872|scaffold_101153.1
Length=1327
Score = 1666 bits (902), Expect = 0.0
Identities = 1167/1298 (90%), Gaps = 6/1298 (0%)
Strand=Plus/Plus
Query 268 GAAGAACATGGCAGGAGCTGCCTCCGCGCTGTTTCTGCTTGATATCAAGGGACGCGTTCT 327
||||||||||||||| || ||||| |||||||||||||| |||||||| || || |||||
Sbjct 14 GAAGAACATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCT 73
Query 328 CGTCTGGCGTGATTATCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAA 387
|| ||||| ||||| |||||||||||| ||||||||||||| ||||| |||||||| ||
Sbjct 74 GGTTTGGCGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAA 133
Query 388 GCTCATCGAGAAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGGGT 447
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 134 ACTCATCGAGAAAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTACGATAATGGGGT 193
Query 448 GACTTATATGTTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGGCAGAATTG 507
||| || ||||||||||| ||||| || | ||| | |||||||| ||||||||||| ||
Sbjct 194 GACCTACATGTTTGTACAGCATAGCAACATTTACCTCATGATAGCGTCCAGGCAGAACTG 253
Query 508 TAATGCTGCCAGTCTTCTCTTCTTTCTT-CACCGCGTTGTCGATGTTTTCAAGCATTACT 566
|||||||||||||||||||||| ||||| || ||||| |||||||| |||||||||||||
Sbjct 254 TAATGCTGCCAGTCTTCTCTTC-TTCTTGCATCGCGTAGTCGATGTCTTCAAGCATTACT 312
Query 567 TCGAGGAGTTAGAAGAGGAATCATTGAGGGATAACTTTGTGGTAGTGTATGAGCTACTTG 626
|||||||| |||| || ||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 313 TCGAGGAGCTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTG 372
Query 627 ACGAGATGATGGACTTTGGTTACCCTCAGTATACCGAAGCAAGAATTCTCAGTGAATTCA 686
|||||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||
Sbjct 373 ACGAGATGATGGACTTTGGTTACCCTCAATATACTGAGGCAAGAATCCTTAGTGAATTCA 432
Query 687 TCAAGACTGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACGAATG 746
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 433 TCAAGACTGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACAAATG 492
Query 747 CTGTCTCCTGGAGGAGTGAGGGAATACAGTACAAGAAGAATGAAGTTTTCTTGGATGTTA 806
||||||| |||||||||||||| |||||| ||||| || ||||||||||||||||| |
Sbjct 493 CTGTCTCATGGAGGAGTGAGGGGTTACAGTTTAAGAAAAACGAAGTTTTCTTGGATGTAA 552
Query 807 TTGAGAATGTAAATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTG 866
| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 553 TAGAGAGTGTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTG 612
Query 867 GAGCGCTGAAGATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACT-GAAT 925
||||| ||||||||||||| ||||||| ||||||||||||||||||| |||| || ||||
Sbjct 613 GAGCGTTGAAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGG-CTTGAAT 671
Query 926 GATAGAGTATTGCTGGAAGCGCAGGGACGAGCAACTAAGGGAAAAGCCATTGATTTGGAG 985
||||||||| || |||| || |||||| ||||||| || ||||||||||||||||||||
Sbjct 672 GATAGAGTACTGTTGGAGGCACAGGGAAGAGCAACAAAAGGAAAAGCCATTGATTTGGAA 731
Query 986 GACATCAAATTTCATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCT 1045
|||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct 732 GACATCAAGTTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACTATATCT 791
Query 1046 TTCATACCACCTGATGGGGCTTTTGATCTGATGACATATAGACTCAGCACTCAGGTAAAG 1105
||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 792 TTCATACCACCTGATGGATCTTTTGATCTAATGACGTATAGACTCAGTACTCAGGTAAAG 851
Query 1106 CCACTTATATGGGTGGAAGCACAAATAGAAAGTCATTCAAGAAGTCGTGTTGAGATGCTC 1165
|| ||||||||||||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct 852 CCTCTTATATGGGTGGAAGCGCAGATAGAGAGGCATTCCAGAAGTCGTGTTGAAATGCT- 910
Query 1166 A-TAAAAGCTAGAAGTCAGTTCAAGGAACGAAGCACCGCAACGAACGTTGAGATTGAGTT 1224
| ||||||||||||| || ||||||||| ||||||| ||||| || ||||||||||||||
Sbjct 911 AGTAAAAGCTAGAAGCCAATTCAAGGAAAGAAGCACTGCAACAAATGTTGAGATTGAGTT 970
Query 1225 GCCTGTACCAACCGATGCATCTAACCCCACCGTTAGGACATCTCTAGGGTCTGCCTCTTA 1284
||||||||||||||||||||||||||||| || || |||||||| ||||||||| | ||
Sbjct 971 GCCTGTACCAACCGATGCATCTAACCCCAATGTAAGAACATCTCTTGGGTCTGCCGCATA 1030
Query 1285 TGCTCCTGAAAAAGATGCGTTAGTCTGGAAAATCAAATCTTTCCCGGGGAACAAGGAGTA 1344
|||||| ||||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 1031 TGCTCCCGAAAAAGATGCACTGGTCTGGAAAATCAAATCTTTCCCAGGGAACAAGGAGTA 1090
Query 1345 CATGTTAAGGGCAGAGTTCCATCTTCCAAGTATCACTGCAGAGGAAGCAACTCCTGAGCG 1404
||||| || ||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1091 TATGTTGAGAGCAGAGTTCCATCTTCCAAGTATAACCGCAGAGGAAGCAACGCCTGAGCG 1150
Query 1405 AAAGGCTCCTATCCGTGTCAAATTTGAGATCCCTTATTTCACTGTTTCAGGGATTCAGGT 1464
||| ||||| |||||||||||||| |||||||| || ||||| |||||||| || |||||
Sbjct 1151 AAAAGCTCCAATCCGTGTCAAATTCGAGATCCCATACTTCACAGTTTCAGGAATACAGGT 1210
Query 1465 TCGGTACCTAAAGATTATTGAGAAGAGTGGGTACCAAGCACTTCCATGGGTGAGATACAT 1524
||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1211 TCGATACCTGAAGATCATTGAGAAGAGTGGGTACCAAGCTCTTCCATGGGTGAGATATAT 1270
Query 1525 AACCATGGCTGGTGAGTACGAACTAAGACTCGTGTAAT 1562
|||||||||||||||||||||||| |||||| ||||||
Sbjct 1271 AACCATGGCTGGTGAGTACGAACTGAGACTCATGTAAT 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71266848395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5