BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G60783.1

Length=938
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924973 jgi|Araly1|924973|scaffold_200534.1                        433    1e-120


> Ahg924973 jgi|Araly1|924973|scaffold_200534.1
Length=364

 Score =  433 bits (234),  Expect = 1e-120
 Identities = 312/350 (89%), Gaps = 3/350 (1%)
 Strand=Plus/Plus

Query  245  TTAACTTCATACGATAACTTATGGGATTTTCCGGCAAGACTTACCACCAGTTTGACAGAA  304
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||||  |||
Sbjct  1    TTAACTTCATACGATAACTTATGGGAGTTTCCGGCAAGACTCACCACCAGTTTGATGGAA  60

Query  305  AATTTAGCGAAACTACCGAAGGGAAGAAATGCGTCATCACCGGAATCTCCTTACATTCTA  364
            ||||| ||||||||  |||||| |||||||| |||||||| ||||||||||||| |||| 
Sbjct  61   AATTTGGCGAAACTGTCGAAGGAAAGAAATGGGTCATCACAGGAATCTCCTTACGTTCTC  120

Query  365  CGGTGAAGCCGATTAGCCTCTCTTCCTCTGCCGTATCCAACACGGAAGACGAAGATCTCT  424
            ||  ||||||||||||| || | ||||| |||||| |  ||||||||||||||||||| |
Sbjct  121  CGAAGAAGCCGATTAGCTTCCCCTCCTCAGCCGTAGCTGACACGGAAGACGAAGATCTTT  180

Query  425  GTCCAACGACTCCAACAGCGGATTCCGTTAGAATACCGACGGTAATTCCGTGTCCTCCGG  484
            |||||||||||||||| || | |||||||||||||||||||||  |||| ||||||||||
Sbjct  181  GTCCAACGACTCCAACGGCTGCTTCCGTTAGAATACCGACGGTGTTTCCATGTCCTCCGG  240

Query  485  CGCCTAAGAAACGGAAACTGACATTGAAGGTTAGC--T-ACGGCCCTAGAGAGTTCTTTT  541
            |||||||||||||||||| | |||||||| |||||  | ||||| |||||||||||||||
Sbjct  241  CGCCTAAGAAACGGAAACCGTCATTGAAGTTTAGCTATGACGGCGCTAGAGAGTTCTTTT  300

Query  542  CGCCACCAGATCTCGAGACCGTCTTCATATACAGAACTACTTGATTTTGA  591
            | |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  301  CTCCACCAGATCTCGAGACCGTCTTCATATACAGAACTACTTAATTCTGA  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34806223221


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5