BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60783.1 Length=938 Score E Sequences producing significant alignments: (Bits) Value Ahg924973 jgi|Araly1|924973|scaffold_200534.1 433 1e-120 > Ahg924973 jgi|Araly1|924973|scaffold_200534.1 Length=364 Score = 433 bits (234), Expect = 1e-120 Identities = 312/350 (89%), Gaps = 3/350 (1%) Strand=Plus/Plus Query 245 TTAACTTCATACGATAACTTATGGGATTTTCCGGCAAGACTTACCACCAGTTTGACAGAA 304 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| Sbjct 1 TTAACTTCATACGATAACTTATGGGAGTTTCCGGCAAGACTCACCACCAGTTTGATGGAA 60 Query 305 AATTTAGCGAAACTACCGAAGGGAAGAAATGCGTCATCACCGGAATCTCCTTACATTCTA 364 ||||| |||||||| |||||| |||||||| |||||||| ||||||||||||| |||| Sbjct 61 AATTTGGCGAAACTGTCGAAGGAAAGAAATGGGTCATCACAGGAATCTCCTTACGTTCTC 120 Query 365 CGGTGAAGCCGATTAGCCTCTCTTCCTCTGCCGTATCCAACACGGAAGACGAAGATCTCT 424 || ||||||||||||| || | ||||| |||||| | ||||||||||||||||||| | Sbjct 121 CGAAGAAGCCGATTAGCTTCCCCTCCTCAGCCGTAGCTGACACGGAAGACGAAGATCTTT 180 Query 425 GTCCAACGACTCCAACAGCGGATTCCGTTAGAATACCGACGGTAATTCCGTGTCCTCCGG 484 |||||||||||||||| || | ||||||||||||||||||||| |||| |||||||||| Sbjct 181 GTCCAACGACTCCAACGGCTGCTTCCGTTAGAATACCGACGGTGTTTCCATGTCCTCCGG 240 Query 485 CGCCTAAGAAACGGAAACTGACATTGAAGGTTAGC--T-ACGGCCCTAGAGAGTTCTTTT 541 |||||||||||||||||| | |||||||| ||||| | ||||| ||||||||||||||| Sbjct 241 CGCCTAAGAAACGGAAACCGTCATTGAAGTTTAGCTATGACGGCGCTAGAGAGTTCTTTT 300 Query 542 CGCCACCAGATCTCGAGACCGTCTTCATATACAGAACTACTTGATTTTGA 591 | |||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 301 CTCCACCAGATCTCGAGACCGTCTTCATATACAGAACTACTTAATTCTGA 350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34806223221 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5