BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60790.1
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475253 jgi|Araly1|475253|fgenesh2_kg.2__383__AT1G60790.1 1735 0.0
> Ahg475253 jgi|Araly1|475253|fgenesh2_kg.2__383__AT1G60790.1
Length=1614
Score = 1735 bits (939), Expect = 0.0
Identities = 1021/1062 (96%), Gaps = 0/1062 (0%)
Strand=Plus/Plus
Query 594 GATTGTGATATCTACGATGGAAGTTGGGTTAGAGCTGATGATGAGACAATGCCGTATTAC 653
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 523 GATTGTGATATCTACGATGGAAGTTGGGTTAGAACTGATGATGAGGCAATGCCGTATTAC 582
Query 654 CCACCTGGTTCTTGTCCGTATATAGACAGAGATTTCAACTGTCACGCTAATGGAAGACCT 713
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CCATCTGGTTCGTGTCCGTATATAGACAGAGATTTCAACTGTCACGCTAATGGAAGACCT 642
Query 714 GATGATGCTTATGTTAAATGGAGATGGCAACCAAATGGGTGTGACATTCCCAGGTTGAAT 773
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GATGATGCTTATGCTAAATGGAGATGGCAACCAAATGGGTGTGACATTCCCAGGTTGAAT 702
Query 774 GGAACTGATTTTCTGGAGAAGCTAAGAGGGAAGAAGCTGGTTTTCGTGGGAGATTCGATA 833
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 703 GGAACTGATTTTCTGGAGAAGTTAAGAGGGAAGAAGCTGGTTTTCGTGGGAGATTCGATA 762
Query 834 AACCGGAACATGTGGGAGTCTCTTATTTGCATCCTTAGACATAGTCTCAAGGACAAGAAA 893
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 763 AACCGGAACATGTGGGAGTCTCTTGTTTGCATTCTTAGACATAGTCTCAAGGACAAGAAA 822
Query 894 CGAGTGTATGAGATCTCTGGGAGAAGAGAGTTCAAGAAGAAAGGGTTTTATGCTTTCAGA 953
|||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||
Sbjct 823 CGAGTGTATGAGATTTCAGGTAGAAGAGAGTTCAAGAAGAAAGGGTTTTACGCTTTCAGA 882
Query 954 TTCGAGGACTATAATTGCACGGTGGATTTCGTTGGCTCGCCCTTTTTTGTAAGGGAATCA 1013
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 883 TTCGAGGACTATAATTGCACGGTAGATTTCGTTGGCTCGCCCTTTTTTGTAAGGGAATCA 942
Query 1014 AGTTTCAAAGGTGTGAATGGGACTACATTGGAGACTTTAAGGTTGGATATGATGGATAAG 1073
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 943 AGTTTCAAAGACGTGAATGGGACTACATTGGAGACTTTAAGGCTGGATATGATGGACAAG 1002
Query 1074 ACGACATCCATGTATCGAGATGCTGATATACTGATTTTCAACACTGGCCATTGGTGGACT 1133
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1003 ACGACATCCATGTATCGAGATGCTGATATACTGATTTTCAACACCGGTCATTGGTGGACT 1062
Query 1134 CATGACAAAACAAAGCTAGGAGAAAACTATTACCAAGAAGGTAACGTTGTGTACCCGAGG 1193
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1063 CATGACAAAACGAAGCTAGGAGAGAACTATTACCAAGAAGGTAACGTTGTGTACCCGAGG 1122
Query 1194 CTCAAGGTTCTCGAAGCTTATAAACGAGCTCTCATTACTTGGGCGAAATGGGTCGATAAG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 CTCAAGGTTCTCGAAGCTTATAAACGAGCTCTCATTACTTGGGCGAAATGGGTCGATAAG 1182
Query 1254 AACATCGACCGCAGTCAAACCCACATAGTATTTAGAGGATATTCCGTTACACACTTCAGA 1313
||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||
Sbjct 1183 AACATCGACCGCAGTCAAACCCATGTAGTATTTAGAGGTTATTCCGTTACACATTTCAGA 1242
Query 1314 GGAGGGCCATGGAACTCAGGTGGACAATGCCACAAAGAAACAGAACCGATTTTCAACACG 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GGAGGGCCATGGAACTCAGGTGGACAATGCCACAAAGAAACAGAACCGATTTTCAACACG 1302
Query 1374 AGTTACTTAGCAAAGTATCCATCGAAGATGAAAGCTCTCGAGTATATTCTCCGTGATACA 1433
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1303 AGGTACTTAGCAAAGTATCCTTCGAAGATGAAAGCTCTCGAGTATATTCTCCGTGATACA 1362
Query 1434 ATGAAAACTCCGGTGATATATATGAACATAAGTCGACTAACAGATTTCAGAAAAGATGGT 1493
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1363 ATGAAAACTCCGGTGATATATATGAACATAAGTCGACTAACGGATTTCAGAAAAGATGGT 1422
Query 1494 CATCCTTCGATATACAGAATGGTTTACAGGACGGAAAAAGAGAAAAGAGAGGCCGTGAGT 1553
|| || |||||||| |||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 1423 CACCCGTCGATATATAGAATGGTGTACAGGACCGAAAAGGAGAAAAGAGAGGCCGTGAGT 1482
Query 1554 CACCAAGATTGTAGCCATTGGTGCTTGCCGGGTGTACCGGACACATGGAACCAGCTCTTG 1613
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1483 CACCAAGATTGTAGCCATTGGTGCTTACCGGGTGTTCCAGACACATGGAACCAGCTCTTG 1542
Query 1614 TACGTATCACTGTTAAAGGCCGGGCTAGCGTCTAAGTGGTAG 1655
|| || |||||||||||||||||||| || ||||||||||||
Sbjct 1543 TATGTGTCACTGTTAAAGGCCGGGCTTGCATCTAAGTGGTAG 1584
Score = 608 bits (329), Expect = 4e-173
Identities = 466/528 (88%), Gaps = 25/528 (5%)
Strand=Plus/Plus
Query 6 TTTCCATTTGAACAAACTAAGAAGATGGACTCGTCGAAGAAACTCCTGTTTCCAGACCAG 65
||| |||||| || ||| ||||||||||| ||||| |||||| | ||||||||||||||
Sbjct 1 TTTGCATTTGGACTAACCAAGAAGATGGATTCGTCTAAGAAAGTTCTGTTTCCAGACCAA 60
Query 66 ATTCTGTCTTCTAGAAGAAACATATTAACCAGATTCGGTTTAGGAATCGCTGCTTCTTTC 125
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTTTGTCTTCTAGAAGAAACATCTTAACCAGATTCGGTTTAGGAATCGCTGCTTCTTTC 120
Query 126 CTTCTCCTTACTCTTCTCTCCCTTACTAGTTCCTCCTTCAATGTACCCTT-CGTCTCTCC 184
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 121 CTTCTCCTTACACTTCTCTCCCTTACTAGTTCCTCCTTCAATGT-CCCTTTCGTCTCTCC 179
Query 185 TCTGCTTCAAGGTCTCAAAAGCTCCAATCTAAACAATTCTTCTTCTGTCAAGCAAGTGAA 244
|||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||
Sbjct 180 TCTGCTTCAAGGTCTCAAAAGCTCCAATCTTAACACTTCGTCTTCTGTTAAGCAAGTGAA 239
Query 245 CGAGAAGCCTGAAGTAGTGAATCTCACCGACAAGGTCCCAGATGTCAAAGTTCCAAGCTT 304
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 CGAGAAGCCTGAAGTAGTAAATCTCACCGACAAGGTCCCAGGTGTCAAAGTTCCAAGCTT 299
Query 305 TG-TG--G--------TC-----C--CAG-A--CGCTGGTTCGAAGAACACAACTTTGTC 343
|| || | || | ||| | ||||||||| |||||||||||||||||
Sbjct 300 TGATGCCGAACAAAGATCTGGAACAACAGTAGACGCTGGTTCAAAGAACACAACTTTGTC 359
Query 344 TGAAGAAAGTAAAGTTCCAAGCTTTGATTCTGGACAAAGATCTGGAGAAACAGTTAAGAA 403
|||||| |||||||| ||| ||||||||| |||||||||||||||||| |||||||||
Sbjct 360 TGAAGAGGGTAAAGTTTCAAACTTTGATTCCGGACAAAGATCTGGAGAAGTAGTTAAGAA 419
Query 404 CTCGAGTCTGGCTGAAGAGGGTAATGGT-TCAGTTGCAGATGACCAAAATACCCTTGAAG 462
||||||| || | ||||||||||| | | ||||||||||||||| |||||||||| ||||
Sbjct 420 CTCGAGTTTGCCAGAAGAGGGTAAAG-TCTCAGTTGCAGATGACAAAAATACCCTCGAAG 478
Query 463 CAAATGCGACAACAAGTGTGGGAAACAGCTCGAGCTTGGTGTCTGATT 510
|||||| |||||||||||||| || ||||||||||||| ||||||||
Sbjct 479 TAAATGCTACAACAAGTGTGGGGAATAGCTCGAGCTTGGCGTCTGATT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67952997080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5