BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G60815.1

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924992 jgi|Araly1|924992|scaffold_200553.1                        261    2e-69


> Ahg924992 jgi|Araly1|924992|scaffold_200553.1
Length=288

 Score =  261 bits (141),  Expect = 2e-69
 Identities = 203/233 (87%), Gaps = 4/233 (2%)
 Strand=Plus/Plus

Query  1    ATGTCTGCACGCAAAAAGAATCGTATCCA-TGTTTTCTTTGTTTCAATAATGATTATAAT  59
            ||| |||||| ||||| || || || ||| | |||||||||||||||||||||||||| |
Sbjct  21   ATGGCTGCACACAAAATGAGTC-TAACCAGTCTTTTCTTTGTTTCAATAATGATTATATT  79

Query  60   ATCATTGGTCAGCGGATTTGGAGAAGGAATAAAACAGATAAACTATAAAGATTTGATAAA  119
            ||||||| ||||| |||||||||||||||  ||| | |||||||||  |||| ||| |||
Sbjct  80   ATCATTGTTCAGCCGATTTGGAGAAGGAAGCAAATATATAAACTATGGAGATATGAGAAA  139

Query  120  AGACACAATTCCAGGTTG-CACTAGTAAGAACCCTAAAGAATGCGTCAAAGTTCCAGCCA  178
            ||||| |||||||| |||   | ||||||||||| |||||||| ||||||||||||||||
Sbjct  140  AGACATAATTCCAGCTTGTGGC-AGTAAGAACCCCAAAGAATGTGTCAAAGTTCCAGCCA  198

Query  179  ACACTTACCATCGTGGTTGTGAAATTTCTACACGTTGTCATCGTGAACAGCAT  231
            || |||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct  199  ACCCTTACCATCGTGGTTGTGAAATTTCTACACATTGTCATCGTGAACAACAT  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8515982203


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5