BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60850.2
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475246 jgi|Araly1|475246|fgenesh2_kg.2__376__AT1G60850.1 1768 0.0
Ahg475268 jgi|Araly1|475268|fgenesh2_kg.2__398__AT1G60620.1 976 0.0
> Ahg475246 jgi|Araly1|475246|fgenesh2_kg.2__376__AT1G60850.1
Length=1308
Score = 1768 bits (957), Expect = 0.0
Identities = 1131/1213 (93%), Gaps = 20/1213 (2%)
Strand=Plus/Plus
Query 2 CCGTTTGttcttcatctcctcgccgccgcctcctactctctctttctctctaaattgctc 61
|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 1 CCGTTTGTTCTTCATCTCCTCGCCGCCG---CCAACTCTCTCTTTCTCTCAAAATTGCTC 57
Query 62 aattctctcGGCCAC-----AG------A-CCTAGACAAGGATGGTGACTAAAGCAGAAA 109
|| | |||| ||||| || | ||||||||||||||||||||||||||||||
Sbjct 58 AA-TATCTCAGCCACAGGTAAGCTTCTAACCCTAGACAAGGATGGTGACTAAAGCAGAAA 116
Query 110 AACAATTCGCCAAAAATTTCAACATAGACGATCTCCCTGACGTCCCTGCCGGACTTCCTC 169
| ||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 117 AGCAATTCGCCAAGAACTTCAACATAGACGATCTCCCTGACGTCCCTACTGGACTTCCTC 176
Query 170 CACATCTCAAAGCCCAGCAAACTCGTGTCGTCTCTAAAAACAACGCTCCTGC-TCATACT 228
||||||||||||||||||||||| | ||||||||||| |||||||||||| | |||||||
Sbjct 177 CACATCTCAAAGCCCAGCAAACTGGCGTCGTCTCTAATAACAACGCTCCT-CTTCATACT 235
Query 229 GCGAGTGCCATTTACTCGGGTACCTATGTTTCTTCTAC-GGAAGAGGACGACAATGTGAA 287
||||||||||||||||| |||| ||||||||||||| | || || |||||||| ||||||
Sbjct 236 GCGAGTGCCATTTACTCTGGTAGCTATGTTTCTTCT-CTGGGAGTGGACGACAGTGTGAA 294
Query 288 GCTAGGAAACTTCTATGATAACTTCAAAGTTGATGTGGTTAGTCTCACAAAGACAGATAT 347
||||||||||||||||| || |||||||||||||| |||||||||||||||| |||||
Sbjct 295 ACTAGGAAACTTCTATGAGAATTTCAAAGTTGATGTCATTAGTCTCACAAAGACTGATAT 354
Query 348 GGAATTTGATATGATTGGTATTGATGCAGCGTTTGCCAATGCATTCCGAAGGATCCTTAT 407
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGAATTCGATATGATTGGTATCGATGCAGCGTTTGCCAATGCATTCCGAAGGATCCTTAT 414
Query 408 AGCTGAGGTTCCTTCAATGGCTATTGAAAAAGTGTTGATAGCGTACAACACATCGGTTAT 467
||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 415 AGCTGAGCTTCCTTCAATGGCTATTGAAAAAGTTTTAATAGCATACAACACATCGGTTAT 474
Query 468 TATAGACGAAGTTCTTGCTCACAGGATGGGTCTTATTCCAATTGCCGCAGATCCAAGACT 527
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 475 TATAGATGAGGTTCTTGCTCACAGGATGGGTCTTATTCCAATTGCCGCAGATCCAAGGCT 534
Query 528 TTTTGAATATTTATCCGAACATGATCAGGCGAATGAAAAGAACACCATTGTATTCAAACT 587
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 ATTTGAATATTTATCCGAAAATGATCAGGCGAATGAAAAGAACACCATTGTTTTCAAACT 594
Query 588 CCATGTGAAATGTCCGAAAAATAGACCACGTCTTAAAGTTTTAACGAGTGATTTAAAATG 647
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 595 CCATGTGAAATGTCCGAAAAATAGACCACGTCTTAAAGTTTTAACGAGCGATTTAAAATG 654
Query 648 GTTACCAAATGGAAGTGAGCTTCTGAGAGAATCGGAAAATAAAACCTCAAAGCCAAAAAC 707
||||||||||||||||||| |||| |||||||||| | | ||||||||||||||||||
Sbjct 655 GTTACCAAATGGAAGTGAGTTTCTTAGAGAATCGGGAGGTTCAACCTCAAAGCCAAAAAC 714
Query 708 TTACACTTCATTCAGTTGCAGCCAAGATTCATTACCTGAATTTGCTAATAATCCTATCAC 767
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 715 TTACACTTCATTCAGTTGCAGCCAAGATTCCTTACCCGAATTTGCTAATAATCCTATCAC 774
Query 768 TCCATGCGACCTCGATATCTTGATAGCAAAACTCGCCCCTGGTCAGGAAATCGAGCTCGA 827
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 TCCGTGCGACCTCGATATCTTGATAGCAAAACTCGCCCCTGGTCAGGAAATCGAACTCGA 834
Query 828 AGCTCATGCGGTTAAGGGCATTGGTAAAACACATGCAAAGTGGTCTCCAGTAGGGACTGC 887
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 835 AGCTCATGCGGTTAAGGGCATTGGTAAAACACATGCAAAGTGGTCCCCAGTAGGGACTGC 894
Query 888 TTGGTATAGAATGCATCCTGAGGTGGTTCTACGTGGGGAAGTTGAGGATGAACTTGCTGA 947
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 895 TTGGTATAGAATGCATCCTGAGGTGGTTCTACGTGGGGAAGTTGAGGATGAGCTTGCTGA 954
Query 948 ACGACTTGTAAACGTCTGCCCACAGAATGTTTTCGACATTGAAGACATGGGAAAAGGTAA 1007
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACGACTTGTAAAAGTCTGCCCACAGAATGTTTTCGACATTGAAGACATGGGAAAAGGTAG 1014
Query 1008 GAAAAGGGCAACAGTAGCGCAGCCACGTAAGTGCACATTGTGTAAGGAATGCGTAAGAGA 1067
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1015 GAAAAGGGCAACAGTAGCGCAGCCACGTAAGTGCACGTTGTGTCAGGAATGCGTAAGAGA 1074
Query 1068 CGATGATTTGGTAGACCATGTGGATCTTGGCAGTGTTAAGAACCATTTTATATTTAACAT 1127
||||||||||||||| | ||| |||||||||||||| | |||||||||||||||||||||
Sbjct 1075 CGATGATTTGGTAGAACGTGTTGATCTTGGCAGTGTCAGGAACCATTTTATATTTAACAT 1134
Query 1128 TGAGTCCACCGGATCACTGCCTCCAGAGGTTCTCTTCACTGAAGCTGTGAAGATATTGGA 1187
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1135 CGAGTCCACCGGATCACTTCCTCCGGACGTTCTCTTCACTGAAGCTGTGAAGATATTGGA 1194
Query 1188 AGCTAAATGTGAA 1200
|||||||||||||
Sbjct 1195 AGCTAAATGTGAA 1207
> Ahg475268 jgi|Araly1|475268|fgenesh2_kg.2__398__AT1G60620.1
Length=1423
Score = 976 bits (528), Expect = 0.0
Identities = 943/1139 (83%), Gaps = 46/1139 (4%)
Strand=Plus/Plus
Query 85 ACAAGGATGGTGACTAAAGCAGAAAAACAATTCGCCAAAAATTTCAACATAGACGATCTC 144
||||| || |||||| | | |||||| ||||||||||| |||||||||||| ||||||
Sbjct 122 ACAAGAATCGTGACTGATGAAGAAAAGCAATTCGCCAAGAATTTCAACATATTTGATCTC 181
Query 145 CCTGACGTCCCTGCCGGACTTCCTCCACATCTCAAAGC-CCAGCAAACTCGTGTC-GTCT 202
|||||||||||| ||||||||||||| ||||| ||| ||||| |||||| | | ||||
Sbjct 182 CCTGACGTCCCTACCGGACTTCCTCCGCATCT-TGAGCTCCAGCGAACTCGCG-CTGTCT 239
Query 203 CTAAAAACAACGCTCCTGCTCATACTGCGAGTG-CCATTTACTCGGGTACCTATGTTTCT 261
||| || | |||||| |||| || |||||| || ||||||||||| |||||| |
Sbjct 240 GTAAGAATGATGCTCCTATTCATCCTACGAGTGTCC-TTTACTCGGGTGCCTATG---CC 295
Query 262 TCTACGGAAGAGGACGACAATGTGAAG-CTAGGAAACTTCTATGATAACTTCAAAGTTGA 320
|||| || || |||| ||| ||| ||| |||| |||||||| ||| | |||||||||||
Sbjct 296 TCTATGGGAGTGGACAACAGTGT-AAGACTAGAAAACTTCTCTGAGGATTTCAAAGTTGA 354
Query 321 TGTGGTTAGTCTCACAAAGACAGATATGGAATTT-GATATGATTGGTATTGATGCAGCG- 378
|||| |||||||||| |||||||||||| ||| ||||||||| || | ||||| |
Sbjct 355 TGTGACTAGTCTCACAGAGACAGATATGG-TTTTCGATATGATTAGTGTCCCTGCAG-GA 412
Query 379 TTTGCCAATGCATTCCGAAGGATCCTTATAGCTGAGGTTCCTTCAATGGCTATTGAAAAA 438
| || ||||| |||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 413 ATCGCTAATGCTTTCCGAAGAATCCTCCTAGCTGAGCTTCCTTCAATGGCTATTGAAAAA 472
Query 439 GTG-TTGATAGCGTACAACACATCGGTTATTA-TAGACGAAGTTCTTGCTCACAGGATGG 496
||| ||| |||| ||||||| ||||||| || |||||||||||||||||||||| |||
Sbjct 473 GTGTTTG-TAGCAAACAACACGTCGGTTA-TACAAGACGAAGTTCTTGCTCACAGGTTGG 530
Query 497 GTCTTATTCCAATTGCCGCAGATCCAAGACTTTTTGAATATTTATCCGAACATGATCAGG 556
||||||||||||||||||||||||| || ||||||||||||||||||||| | ||||||
Sbjct 531 GTCTTATTCCAATTGCCGCAGATCCGAGCCTTTTTGAATATTTATCCGAAAACGATCAGC 590
Query 557 CGAATGAAAAGAACACCATTGTATTCAAACTCCATGTGAAATGTCCGAAAA-ATAGA-CC 614
| |||||||||||||||||||| |||||||||||||| |||||||| |||| | || ||
Sbjct 591 CAAATGAAAAGAACACCATTGTTTTCAAACTCCATGTAAAATGTCC-AAAAGGT-GACCC 648
Query 615 ACGTCTTAAAGTTTTAACGAGTGATTTAAAATGGTTACCAAATGGAAGTGAGCTTCTGAG 674
|||| |||||| ||||| || || || | ||||||||||||||||||||||||||| |
Sbjct 649 GCGTCGTAAAGTCTTAACAAGCGAATTGAGATGGTTACCAAATGGAAGTGAGCTTCTCAA 708
Query 675 AGAATC-GGAAAATAAAACCTCAAAGCCAAAAACTTACACTTCATTCAGTTGCAGCCAAG 733
|||||| || | | |||| |||||||||||||||||||||||||||| |||||||
Sbjct 709 AGAATCTGG-AGGTTCAACCACAAAGCCAAAAACTTACACTTCATTCAGCCATAGCCAAG 767
Query 734 ATTCATTACCTGAATTTGCTAATAATCCTATCACTCCATGCGACCTCGATATCTTGATAG 793
|||| || |||||||||||||| ||||||||||| ||| || | |||||||||||||
Sbjct 768 ATTCCTTCCCTGAATTTGCTAAAAATCCTATCACGCCAAGCTTTCAAGATATCTTGATAG 827
Query 794 CAAAACTCGCCCCTGGTCAGGAAATCGAGCTCGAAGCTCATGCGGTTAAGGGCATTGGTA 853
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 828 CAAAACTCGGCCCTGGTCAGGAAATCGAGCTTGAAGCTCATGCGGTTAAGGGCATTGGTA 887
Query 854 AAACACATGCAAAGTGGTCTCCAGTAGGGACTGCTTGGTATAGAATGCATCCTGAGGTGG 913
||||||||||||||||||| ||||| | || |||||||| |||||| ||||||||||
Sbjct 888 AAACACATGCAAAGTGGTCCCCAGTTGCAACGGCTTGGTACCGAATGCTTCCTGAGGTGA 947
Query 914 TTCTACGTGG-GGAAGTT-GAGGATGAACTTGCTGAACGA-CTTGTAAACGTCTGCCCAC 970
|||||| | |||| || |||| | ||| ||| ||| || || ||||| || ||||| |
Sbjct 948 TTCTAC-TAAAGGAA-TTCGAGGGTAAACATGCCGAA-GAACTCGTAAAAGTATGCCC-C 1003
Query 971 A-GAATGTTTTCGACATTGAAGACATGGGAAAAGGTAAGAAAAGGGCAACAGTAGCGCAG 1029
| ||| ||||| ||||||||||||||||| |||||| ||| |||||||| ||||| | |
Sbjct 1004 AAGAAAGTTTTTGACATTGAAGACATGGGCCAAGGTAGGAAGAGGGCAACGGTAGCTCGG 1063
Query 1030 CCACGTAAGTGCACATTGTGTA-AGGAATGCGTAAGAGACG-A-TG-ATTTGGT-AGACC 1084
|| ||| | || | ||||||| || ||||| ||||||| | | || | | || | ||
Sbjct 1064 CCGCGTGATTGTTCGTTGTGTAGAG-AATGCATAAGAGAAGGAGTGGAATGGGCGAAACA 1122
Query 1085 ATGTGGATCTTG-GCAGTGTTAAGAACCATTTTATATTTAAC-ATTGAGTCCACCGGATC 1142
| |||||||| | || |||| |||||||||| |||||||| | |||||||||||||||||
Sbjct 1123 A-GTGGATCT-GCGCCGTGTCAAGAACCATTATATATTTA-CGATTGAGTCCACCGGATC 1179
Query 1143 ACTGCCTCCAGAGGTTCTCTTCA-CTGAAGCTGTGAAGATATTGGAAGCTAAATGTGAA 1200
|| |||||| || ||||| |||| | ||||| |||||||| || |||| ||||||||||
Sbjct 1180 ACAGCCTCCGGACGTTCTTTTCAAC-GAAGCAGTGAAGATTTTAGAAGATAAATGTGAA 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5