BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60860.1
Length=2786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475245 jgi|Araly1|475245|fgenesh2_kg.2__375__AT1G60860.1 3864 0.0
Ahg919893 jgi|Araly1|919893|scaffold_101174.1 1997 0.0
> Ahg475245 jgi|Araly1|475245|fgenesh2_kg.2__375__AT1G60860.1
Length=2420
Score = 3864 bits (2092), Expect = 0.0
Identities = 2329/2441 (95%), Gaps = 25/2441 (1%)
Strand=Plus/Plus
Query 33 TATTTTCAAATCGAAGAAGACAGCAATTCGAGGGTTTACTTGTCTTGTCTTGTTGACTCG 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATTTTCAAATCGAAGAAGACAGCAATTCGAGGGTTTACTTGTCTTGTCTTGTTGACTCG 60
Query 93 ATTCGTAGACTTTTGGTCTGAAGCTTCTTCGTGTTTTATCTTAACAATGGCGGGTTTTAT 152
|||||||||| | | |||| | |||||| ||||||||||||| ||||||||
Sbjct 61 ATTCGTAGAC------T-T----CTTC-T--TGTTTTGTCTTAACAATGGCTGGTTTTAT 106
Query 153 CAATCTTGAGGATTCCCCAATGTTTCAAAAACAGGTCTTCTCCTTGGAAGGGACAAGTGA 212
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 107 CAATCTTGAGGATTCCCCAATGTTTCAAAAACAGGTTTTCTCCTTGGAAGGGACAACTGA 166
Query 213 TGAGCTTAAAGATCGTTGTCAGAAGTTATACAAAGGTGTTAAGAAGTTCATGGGAGCTTT 272
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 167 TGAGCTTAAAGATCGTTGTCAGAAGTTGTACAAAGGTGTTAAGAAGTTCATGGGGGCTTT 226
Query 273 AGGAGAGGCATCTACTGGAGTTAGTGCCTTTGCAGATTCTCTTGAAGAGTTTGGTGCTGG 332
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 227 GGGAGAGGCATCTACTGGAGTCAGTGCCTTTGCAGATTCTCTAGAAGAGTTTGGTGCTGG 286
Query 333 ACATGATGATCCAGTCAGTGTTTCAATTGGAGGTCCAGTAATATCTAAGTTCATAAATAC 392
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 287 ACATGATGATCCCGTCAGTGTTTCAATTGGAGGTCCAGTAATATCTAAATTTATAAATAC 346
Query 393 ACTTCGAGAGCTCTCCTCTTATAAGGAGTTTCTTCGCTCACAGGTGGAGCATGTATTACT 452
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 347 ACTTCGAGAGCTCTCCTCTTATAAGGAGTTTCTTCGCTCACAGGTGGAGCACGTATTACT 406
Query 453 TGAGAGGCTGACAAACTTTATGACTGTTGATCTACAAGAAGCAAAGGAGTCTCGGCGTCG 512
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 407 TGAGAGGCTGACAAACTTTATGACTGTTGATCTACAAGAAGCAAAGGAGTCTCGCCGTCG 466
Query 513 GTTCGATAAAGCTGTCCATTCTTATGATCAGGCACGCGAAAAGTTTGTGTCGCTAAAGAA 572
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 467 TTTTGATAAAGCTGTCCATTCTTATGATCAGGCACGTGAAAAGTTTGTGTCGCTAAAGAA 526
Query 573 GAATACCAGAGGAGACATTGTTGCTGAGTTGGAAGAGGATTTGGAGAACTCGAAGTCAGC 632
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 527 GAATACCAGAGGAGACATTGTTGCTGAGTTGGAAGAGGATCTGGAGAACTCGAAGTCAGC 586
Query 633 ATTTGAGAAAAGTCGTTTCAATCTAGTAAATTCACTGATGACCATTGAAGCAAAAAAGAA 692
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 587 ATTTGAGAAAAGCCGTTTCAATCTAGTAAATTCATTGATGACCATTGAAGCAAAAAAGAA 646
Query 693 GTACGAGTTCTTGGAATCTATAAGTGCAATTATGGATTCCCATTTCAAATATTTTAAGCT 752
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 647 GTACGAGTTCTTGGAATCTATAAGTGCAATTATGGATTCCCATTTGAGATATTTTAAGCT 706
Query 753 TGGTTATGATCTATTAAGTCAATTGGAGCCTTACATCCATCAGGTATTGACATACGCACA 812
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TGGTTATGATCTATTGAGTCAATTGGAGCCTTACATCCATCAGGTATTGACATACGCACA 766
Query 813 ACAGTCAAAAGAACAGTCTAAGATTGAACAAGATCGATTTGCACA-ACGCATTCAAGAAT 871
||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 767 ACAATCAAAAGAACAGTCTAAGATTGAACAAGATCGATTTGCA-AGACGCATTCAAGAAT 825
Query 872 TCAGGACTCAATCTGAATTAGACAGCCAACAGGCCTCTGCTAAAGCAGATCCCTCCGATG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 826 TCAGGACTCAATCTGAATTAGACAGCCAACAGGCCTCTGCTAAAGCAGATCCCTCTGGTG 885
Query 932 TTGGTGGAAACCATGTTTATAGAGCTATCCCCCGTAAAAACGTAGAAGCAAACTCAGTTT 991
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 886 TTGATGGAAACCATGTTTATAGAGCTATCCCCCGTAAAAGTGTAGAAGCAAATTCAATTT 945
Query 992 CAACAGCAGACAAGGAAGTAACTAAACAAGGGTATCTATTAAAGCGATCAGCTAGTTTGA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CAACAGCAGACAAGGAAGTAACTAAACAAGGGTATCTATTAAAGCGATCAGCTAGTTTGA 1005
Query 1052 GAGCTGATTGGAAAAGGAGATTCTTTGTGCTTGACAACCATGGATCCCTATACTATTACA 1111
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GAGCTGATTGGAAAAGGAGGTTCTTTGTGCTTGACAACCATGGATCCCTATACTATTACA 1065
Query 1112 GAAACACCGGTAATAAATCAGCGAAATCTCAGCATTACTACAGTGGTTTAGGAGAGCATA 1171
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1066 GAAACACCGGTAATAAATCAGCGGGATCTCAGCATTACTACAGTGGTTTAGGTGAGCATA 1125
Query 1172 GTAGCGGCGTCTTTGGGAGATTTCGTACAAGACACAATCGATCAGCTTCACAGGGAAGCC 1231
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1126 ATAGCGGCGTCTTTGGGAGATTTCGTTCAAGACACAATCGATCAGCTTCACAGGGAAGCC 1185
Query 1232 TAGATTGCAATATGATCGATCTCCGTACTTCACTGATAAAATTGGACGCAGAGGACACAG 1291
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1186 TAGATTGCAATATGATCGATCTCCGTACCTCACTGATAAAATTGGAGGCAGAGGACACAG 1245
Query 1292 ATCTTCGACTCTGTTTTAGAATTATATCTCCTCAAAAGACTTACACACTACAGGCTGAAA 1351
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1246 ATCTTCGACTCTGTTTTAGAATTATATCTCCTCAAAAGACTTACACATTACAGGCTGAAA 1305
Query 1352 ATGGAGCTGATAGGATGGATTGGGTAAATAAGATCACAGCAGCTATAACAATACGTCTGA 1411
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 1306 ATGGAGCTGATAGGATGGATTGGGTCAATAAGATCACAGCAGCTATAACAACACGCCTGA 1365
Query 1412 ATTCTCATTTTCTGCAGCAGTCACCAGCAAGATACTTGGATAAAAAGAATACTAGTTCTG 1471
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1366 ATTCTCATTTTCTGCAGCAGTCACCAGCAAGATACTTGGATAAAAACTATACTAGTTCTG 1425
Query 1472 GTCCTGCCACTGAAAACCTCACCCTGAATCAAAAAGAAGATTATAATCAAAGACTAAATG 1531
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1426 GTCCTGCTACTGACGACCTCACCCTGAATCAAAAACAAGATTATAATCAAAGACTAAATA 1485
Query 1532 TGGGGGATGACGTCCTTACAATACTCAGAGAAATTCCTGGAAATAAC-ACTTGTGCAGAA 1590
|||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct 1486 TGGGGGATGACGTCCTTACAATACTCAGAGGAATTCCTGGAAATAACGA-ATGTGCAGAA 1544
Query 1591 TGCAATGCACCTGACCCCGATTGGGCATCATTGAATCTTGGAGTTTTGATGTGCATTGAA 1650
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TGCAATGAACCTGACCCCGATTGGGCATCATTGAATCTTGGAGTTTTGATGTGCATTGAA 1604
Query 1651 TGCTCTGGTGTTCACAGGAATCTCGGCGTTCATATATCCAAGGTGAGATCGCTCACATTG 1710
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1605 TGTTCTGGTGTTCACAGGAATCTCGGCGTCCATATATCCAAGGTGAGATCGCTCACATTG 1664
Query 1711 GATGTGAAAGTATGGGAGCCTACAATCTTGGACTTATTTCGGAACTTAGGCAACGGATAC 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1665 GATGTGAAAGTATGGGAGCCTACAATCTTGGACTTATTTCGGAACTTAGGCAATGCATAC 1724
Query 1771 TGTAATTCAGTCTGGGAGGAGCTACTTCATCACCTTGACGATGACAGTGAAAAGGGATCG 1830
|||||||| || ||||||||||||||||| | | |||| |||||| |||||||||| ||
Sbjct 1725 TGTAATTCGGTGTGGGAGGAGCTACTTCA-C-C-TTGAGGATGACGGTGAAAAGGG-TCC 1780
Query 1831 A-CAGACACACTTGCATCAGTTTC-GAAACCATCTTCAGAAGATTGGTTTACTCTGAAGG 1888
| |||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||
Sbjct 1781 AACAGACACACTTGCATC-GATTCCGAAACCATCTTCAGAAGATTCCTTTACTCTGAAGG 1839
Query 1889 AGAAATATATTAACGGAAAGTACCTGGAGAAAGCACTAGTTGTCAAAGATGAAAGAGAAG 1948
||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1840 AGAAATACATTCATGGAAAGTACCTGGAGAAAGCGCTAGTTGTCAAAGATGAAAGAGAAG 1899
Query 1949 CAAATTCTACTGCCTCAAGTAGAATATGGGAAGCGGTTCAAAGCAGGAACATAAGAGACA 2008
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 CAAACTCTACTGCCTCAAGTAGAATATGGGAAGCGGTTCAAAGCAGGAACATAAGAGACA 1959
Query 2009 TCTACCGACTCATTGTAAAAGCAGATGCAAATATCATCAATACCAAGTTCGATGATATTA 2068
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1960 TCTACCGACTCATTGTAACAGCAGATGCAAATATCATCAATACTAAGTTCGATGATATTA 2019
Query 2069 CTGACCTTGATGTATATCACCACCACCATGTTGATGCACCAGATGAAGTAAAGAAAAGGC 2128
||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2020 CTGACGTTGATGCATATCACCACCACCATAATGATGCACCAGATGAAGTAAAGAAAAGGC 2079
Query 2129 ACGATCCAAATGCGTGTCAGAGAATCAAGAATTCGAACGAAGCAAGAAACTGTCTTCAAG 2188
|||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2080 ACGATCCAAATGCGTGCCAGAGAATCAAGGATTCGAACGAACCAAGAAACTGTCTTCAAG 2139
Query 2189 GCTGCTCATTGTTGCATGTGGCGTGTCAAAGCGGTGACCCAATCTTGCTTGAACTGCTGT 2248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2140 GCTGCTCATTGTTGCATGTGGCGTGTCAAAGCGGTGACCCAATCTTGCTTGAACTGTTGT 2199
Query 2249 TGCAGTTCGGGGCTGACATAAACATGAGAGATTACCACGGACGAACTCCATTACACCATT 2308
||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2200 TGCAGTTTGGGGCTGACATAAACATGAGAGATTACCACGGAAGAACTCCGTTACACCATT 2259
Query 2309 GCATCGCATCAGGGAACAACGCATTTGCAAAGGTTTTGCTGAGAAGAGGTGCTCGTCCAT 2368
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2260 GCATCGCATCAGGGAACAACACATTTGCAAAGGTTTTACTGAGAAGAGGTGCTCGTCCAT 2319
Query 2369 CAATAGAGGATGGTGGAGGATTAAGTGTGTTGGAAAGGGCAATGGAGATGGGAGCCATAA 2428
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2320 CAATAGAAGATGGTGGAGGATTAAGTGTGTTGGAAAGAGCAATGGAGATGGGAGCCATAA 2379
Query 2429 CCGATGAAGAGCTCTTCCTTCTATTAGCAGAGTGTCAGTAA 2469
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 CCGATGAAGAGCTCTTCCTTCTATTAGCAGAGTGTCAGTAA 2420
> Ahg919893 jgi|Araly1|919893|scaffold_101174.1
Length=2366
Score = 1997 bits (1081), Expect = 0.0
Identities = 1969/2389 (82%), Gaps = 96/2389 (4%)
Strand=Plus/Plus
Query 117 TTCTTCGTGTTTTATCTT-AACAATGGCGGGTTTTATCAATCTTGAGGATTCCCCAATGT 175
|||||| | |||| | || | |||||||| ||||||||||| ||||||||||||||||
Sbjct 3 TTCTTCCT-TTTTGT-TTCACCAATGGCGACCTTTATCAATCTGGAGGATTCCCCAATGT 60
Query 176 TTCAAAAACAGGTCTT-CTCCTTGGAAGGGACAAG-TGATGAGCTTAAAGATCGTTGTCA 233
|||| |||||||| || |||||||| ||||| || ||||||||||||||||||||||||
Sbjct 61 TTCAGAAACAGGT-TTGTTCCTTGGAGGGGAC-AGCTGATGAGCTTAAAGATCGTTGTCA 118
Query 234 GAAGTTATACAAAGGTGTTAAGAAGTTCAT-GGGAGCTTTAGGAGAGGCATCTACTGGAG 292
|||| |||||||||||||||||||||| || |||| |||| ||||||||||| | ||||
Sbjct 119 GAAGCTATACAAAGGTGTTAAGAAGTTTATGGGGA-CTTTGGGAGAGGCATCCAAAGGAG 177
Query 293 TTAGTGCCTTTGCAGATTCTCTTGAAGAGTTTGGTGCTGGACATGATGATCC-AGTCAGT 351
|||||||||||||||| ||| ||||| ||||| | || || ||||||||| | |||||
Sbjct 178 AAAGTGCCTTTGCAGATTGTCTGGAAGAATTTGGAGGTGCACCTGATGATCCTA-TCAGT 236
Query 352 GTTTCAATTGGAGGTCCAGTAATATCTAAGTTCATAAATACACTTCGAGAGCTCT-CCTC 410
||||||||||||| || || ||||| || || |||||| ||||||||||||| | ||||
Sbjct 237 CTTTCAATTGGAGGCCCCGTTATATCCAAATTTATAAATTCACTTCGAGAGCT-TGCCTC 295
Query 411 TTATAAGGAGTTTCTTCGCTCACAGGTGGAGCATGTATTACTTGAGAGGCTGACAAACTT 470
|||||||||||||||| ||||||||||||||||||| ||||| |||||| ||| |||||
Sbjct 296 TTATAAGGAGTTTCTTTGCTCACAGGTGGAGCATGTGTTACTCGAGAGGTTGATGAACTT 355
Query 471 TATGACTGTTGATCTACAAGAAGCAAAGGAGTCTCGGCGTCGGTTCGATAAAGCTGTC-C 529
||| | |||||||||||||||||| ||||||||||| | ||| || |||||||||| | |
Sbjct 356 TATTAATGTTGATCTACAAGAAGCTAAGGAGTCTCGCCATCGATTTGATAAAGCTG-CTC 414
Query 530 ATTCTTATGATCAGGCACGCGAAAAGTTTGTGTCGCTAAAGAAGAATACCAGAGGAGACA 589
|||| ||||||||| | ||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 415 ATTCGTATGATCAGTCGCGCGAAAAGTTTGTGTCTTTAAAGAAGAATACAAGAGGAGAAA 474
Query 590 TTGTTGCTGAGTTGGAAGAGGATTTGGAGAACTCGAAGTCAGCATTTGAGAAAAGTCGTT 649
||||||| ||||||||||||||| |||||||||| |||||| |||||||||| || ||||
Sbjct 475 TTGTTGCAGAGTTGGAAGAGGATCTGGAGAACTCAAAGTCAACATTTGAGAAGAGCCGTT 534
Query 650 TCAATCTAGTAAATTCACTGATGACCATTGAAGCAAAAAAGAAGTACGAGTTCTTGGAAT 709
||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||
Sbjct 535 TCAATCTAGTAAATTCACTGATGACTATTGAAGCGAAAAAGAAGTATGAGTTTTTAGAAT 594
Query 710 CTATAAGTGCAATTATGGATTCCCATTTCAAATATTTTAAGCTTGGTTATGATC-TATTA 768
|||||||||||||||||||| ||||| | | ||||||||| ||||| ||||| | | ||
Sbjct 595 CTATAAGTGCAATTATGGATGCCCATCTGAGATATTTTAAACTTGGATATGA-CTTGTTG 653
Query 769 AGTCAATTGGAGCC-TTACATCCATCAGGTATTGACATACGCACAACAGTCAAAAGAACA 827
|||||| |||| || || ||||||||| |||| ||||| || || || |||||||||||
Sbjct 654 AGTCAACTGGAACCATT-TATCCATCAGATATTAACATATGCTCAGCAATCAAAAGAACA 712
Query 828 GTCTAAGATTGAACAAGATCGATTTGCACA-ACGCATTCAAGAATTCAGGACTCAATCTG 886
|||||||||||||||||||||| | ||| | ||||||||||||||||||||| || || |
Sbjct 713 GTCTAAGATTGAACAAGATCGACTAGCA-AGACGCATTCAAGAATTCAGGACCCAGTCGG 771
Query 887 AATTAGACAGCCAACAGGCCT--CTGCTAAAGCAGATCCCTCCGATGTTGGTGGAAACCA 944
||||||||||||||||| | | | ||||| ||||| || || | |||| |||||||
Sbjct 772 AATTAGACAGCCAACAG-C-TAGCCGCTAACGCAGAACCTTCTGGTGTTAACGGAAACCG 829
Query 945 TGTTTATAGAGCTATCCCCCGTAAAAACGTAGAAGCAAACTCAGTTTCAACAGCAGACAA 1004
|| | | | ||||| |||||| || | |||| ||||| ||||||||||||
Sbjct 830 TGGTG---G-G--ATCCCTTATAAAAA--TACC-G-AAACA-AGTTT-AACAGCAGACAA 877
Query 1005 GGAAGTAACTAAACAAGGGTATCTATTAAAGCGATCAG-CTAGTTTGAGAGCTGATTGGA 1063
|||||||| |||||| |||||| |||||||||| || | | ||||||||| |||||||||
Sbjct 878 GGAAGTAATTAAACAGGGGTATTTATTAAAGCGTTC-GTCAAGTTTGAGAACTGATTGGA 936
Query 1064 AAAGGA-GATTCTTTGTGCTTGACAACCATGGATCCCTATACTATTACAGAAAC-ACCGG 1121
|||| | | || ||||| ||||||| ||||| ||| | ||||||||||||| | | ||
Sbjct 937 AAAGAAAGTTT-TTTGTCCTTGACAGTCATGGCTCCATGTACTATTACAGAA-CTAATGG 994
Query 1122 TAATAAATCAGCGAAATCTCAGCATTACTACAGTGGTTTAGGAGAGCATAGTAGC-GGCG 1180
|||||||||| | |||||||||| |||| ||||||| | || |||| || | ||||
Sbjct 995 TAATAAATCAATGGGATCTCAGCATCACTATAGTGGTTCATCTGACCATAATA-CTGGCG 1053
Query 1181 TCTTTGGGAGATTTCGTACAAGACACAATCGATCAGCTTC----AC--AGGGAAGCCTAG 1234
| ||||| |||| ||| ||||||| |||||||||| ||| || |||| ||| |||
Sbjct 1054 TATTTGGTCGATTCCGTGCAAGACATAATCGATCAGGTTCGCTTACTGAGGGCAGCTTAG 1113
Query 1235 ATTGCAATA-TGATCGATCTCCGTACTTCACTGATAAAATTGGACGCAGAGGACACAGAT 1293
| |||| | || || ||||| ||||| |||||||| | |||||||| |||| |||
Sbjct 1114 GCTATAATACT-ATTGACCTCCGCACTTCTTTGATAAAACTAGACGCAGAAGACATGGAT 1172
Query 1294 CTTCGACTCTGTTTTAGAATTATATCTCCTCAAAAGACTTACACACTACAGGCTGAAAAT 1353
||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1173 CTTCGGCTCTGTTTCAGAATTATTTCTCCTCAAAAAACTTACACACTTCAGGCTGAAAAT 1232
Query 1354 GGAGCTGATAGGATGGATTGGGTAAATAAGATCACAGCAGCTATAACAATACGTCTGAAT 1413
||||| ||||||||||| |||||||||||||||||| |||||||| | | ||| |||
Sbjct 1233 GGAGCAGATAGGATGGACTGGGTAAATAAGATCACAACAGCTATAGGGACGCTTCTCAAT 1292
Query 1414 TCTCATTTTCTGCAGCAGTCACCAGCAAGATACTTGGATAAAAAG-AATACTAGTTCTGG 1472
||||||||||| || |||||||||| ||| ||||||||| | | || ||||||||||
Sbjct 1293 TCTCATTTTCTACAACAGTCACCAGTGCGATTCTTGGATAAGA-GCAACACTAGTTCTGC 1351
Query 1473 TCCTGCCACTGAAAACCTCACCCTGAATCAAAAA-GAAGATTATAAT-CAAAGACTA-AA 1529
|||||| | || | || || | |||| | || || || || ||| ||| | ||
Sbjct 1352 TCCTGCTAATGCTGTCGTCTCCGGGGATCAGATTCGAC-ATAATGATGCAA-GAC-AGAA 1408
Query 1530 TGTGGGGGATGACGTCCTTA-CAATACTCAGAGAAATTCCTGGAAATAACACTTGTGCAG 1588
| | |||||||| ||| | | |||||||||||| |||||| |||||||| | |||||||
Sbjct 1409 TATCGGGGATGATGTC-TCAACAATACTCAGAGGAATTCCGGGAAATAATGCATGTGCAG 1467
Query 1589 AATGCAATGCACCTGACCCCGATTGGGCATCATTGAATCTTGGAGTTTTGATGTGCATTG 1648
| |||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1468 AGTGCAATGCTCCTGAGCCCGATTGGGCATCATTAAATCTTGGAGTTTTGTTGTGCATTC 1527
Query 1649 AATGCTCTGGTGTTCACAGGAATCTCGGCGTTCATATATCCAAGGTGAGATCGCTCACAT 1708
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1528 AATGCTCTGGTGTTCACAGGAATCTCGGCGTTCATATATCCAAGGTGAGATCCCTCTCAT 1587
Query 1709 TGGATGTGAAAGTATGGGAGCCTACAATCTTGGACTTATTTCGGAACTTAGGCAACG-GA 1767
| ||||||||||| |||||||| || ||||||||||| ||| | || || ||||| | |
Sbjct 1588 TAGATGTGAAAGTGTGGGAGCCAACGATCTTGGACTTGTTTAGAAATTTGGGCAATGTG- 1646
Query 1768 TACTGTAATTCAGTCTGGGAGG-AGCTACTTCATCACCTTGACGATGACAGTGAAAAGGG 1826
|||||||||||| | ||||||| | |||||||| | | ||||||||||| | ||| | ||
Sbjct 1647 TACTGTAATTCACTGTGGGAGGGA-CTACTTCA-C-C-TTGACGATGACTGCGAAGACGG 1702
Query 1827 ATC-GACA--GACACACTTGCATCAGTTTCGAAACCATCTTCAGAAGATTGGTTTACTCT 1883
||| | || | | || | ||||||||||| ||||||| | ||||||||| |||| | |
Sbjct 1703 ATCAG-CAATGTCGCA-T-GCATCAGTTTCAAAACCATGTCCAGAAGATTCCTTTAGTGT 1759
Query 1884 GAAGGAGAAATATATTA-ACGGAAAGTACCTGGAGAAAGCACTAGTTGTCAAAGATGAAA 1942
|||||||||||| ||| | ||||||||||||||||||||| |||| ||||| |||||||
Sbjct 1760 GAAGGAGAAATACATTCTA-GGAAAGTACCTGGAGAAAGCATTAGTCGTCAAGGATGAAA 1818
Query 1943 GAGAAGCAAATTCTACTGCCT-CAAGTAGAATATGGGAAGCGGTTCAAAGCAGGAACATA 2001
| |||||||| || |||| | | ||||||||||||||||| ||||||||||| ||||||
Sbjct 1819 GTGAAGCAAAACCTTCTGC-TGCGAGTAGAATATGGGAAGCTGTTCAAAGCAGAAACATA 1877
Query 2002 AGAGACATCTACCGACTCATTGTAAA-A--GCAGATGCAAATATCATCAATACCAAGTTC 2058
|||| ||||| ||||| ||||| | | | |||| ||||| ||||| |||||||||
Sbjct 1878 CGAGAAATCTATCGACTGATTGTTACTACTGGGGATGTGAATATTATCAACACCAAGTTC 1937
Query 2059 GATGATATTACTGACCTTGATGTATATCACCACCACCATGTTGATGCACCAGATGAA-G- 2116
|||||||| ||||| |||||| ||||||||| |||||||||| |||| ||| |
Sbjct 1938 GATGATATAACTGATATTGATGCATATCACCA------TGTTGATGCAGCAGA-GAAAGC 1990
Query 2117 --TAAAGAAAAGGCACGATCCAAATGCGTGTCAGAGAATCAA-GAATTCGAACGAAGCAA 2173
|||||||||| || || |||| || ||||||||||||||| |||| | ||| |||||
Sbjct 1991 AGTAAAGAAAAGACATGACCCAACTGTGTGTCAGAGAATCAAAGAATCC-AACCAAGCAG 2049
Query 2174 GAAACTGTCTTCAAGGCTGCTCATTGTTGCATGTGGCGTGTCAAAGCGGTGACCCAATCT 2233
||||||||||||||||||| || ||| | |||||||| ||||| | |||||| | |||
Sbjct 2050 GAAACTGTCTTCAAGGCTGTTCCTTGCTCCATGTGGCTTGTCACATTGGTGACTCTGTCT 2109
Query 2234 TGCTTGAACTGCTGTTGCAGTTCGGGGCTGACATAAACATGAGAGATTACCACGGACGAA 2293
||||||||||| |||||||||| || |||||| ||||||| |||||||| |||||| | |
Sbjct 2110 TGCTTGAACTGTTGTTGCAGTTTGGTGCTGACCTAAACATAAGAGATTATCACGGAAGGA 2169
Query 2294 CTCCATTACACCATTGCATCGCATCAGGGAACAACGCATTTGCAAAGGTTTTGCTGAGAA 2353
|||| |||||||||||||| |||| |||||| || |||||||||| || | ||| |||
Sbjct 2170 CTCCGTTACACCATTGCATATCATCTGGGAACCACAAATTTGCAAAGATTCTACTGCGAA 2229
Query 2354 GAGGTGCTCGTCCATCAATAGAGGATGGTGGAGGATTAAGTGTGTTGGAAAGGGCAATGG 2413
|||| || || ||||| |||||||| | |||||| |||| ||| | || || || ||||
Sbjct 2230 GAGGAGCACGCCCATCGATAGAGGACGATGGAGGGCTAAGCGTGCTAGAGAGAGCGATGG 2289
Query 2414 AGATGGGAGCCATAACCGATGAAGAGCTCTTCCTTCTATTAGCAGAGTG 2462
| |||||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 2290 AAATGGGAGCCATAACTGATGAAGAGCTCTTTCTTCTCTTAGCCGAGTG 2338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105129076200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5