BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60880.1
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475244 jgi|Araly1|475244|fgenesh2_kg.2__374__AT1G60880.1 728 0.0
Ahg475240 jgi|Araly1|475240|fgenesh2_kg.2__370__AT1G60920.1 460 4e-129
> Ahg475244 jgi|Araly1|475244|fgenesh2_kg.2__374__AT1G60880.1
Length=558
Score = 728 bits (394), Expect = 0.0
Identities = 519/576 (90%), Gaps = 21/576 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGGCaaaaaaaC-AAAGATTGAGATTAAGAAG-ATC-ATAAACAAACCCGCAAAA 57
||||||||| ||||||| ||||| ||||||| ||| ||| | ||||||| ||||| |
Sbjct 1 ATGGGAGGC-AAAAAACGTAAGATAAAGATTAA-AAGAATCGA-AAACAAAGTCGCAAGA 57
Query 58 ACGGTTGCTTTCACAAAACGCAGGGAAGGTCTCTTCCGCAAAGCTTCACAGCTTTGTCTC 117
| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 58 ATGGTTGCTTTCACAAAACGCAGGGCCGGTCTCTTCCGCAAAGCTTCACAGCTCTGTCTC 117
Query 118 CTCTCTCCAGCCACTCAAATCGCAATCTTAGCGGCTCCTATGACTTCCAAATCTCACGCT 177
|||||||| | |||||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 118 CTCTCTCCCGGCACTCAAATCGCAATCTTAGCGACTCCTATGACTTCCAATTCTCATGCT 177
Query 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGATAACGTTGTCTCCTCTCTGCTTTATGAC 237
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGATAGCGTTGTCTCCTCTCTGCTTTACGAC 237
Query 238 CATCCTCCTCTTACGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGAAGAC 297
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAGCCTCCTCTTCCGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGAAGAC 297
Query 298 AAACGTTTTGACGTATCGGAGAACGTTGAGGAGTTAAAAGAGGCGGTCGATGCTGTTTCG 357
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 298 AAACGTTTTGATGTATCGGAGAACGTTGAGGAGTTAAAAGATGCGGTCGATGCGGTTTCG 357
Query 358 AGGATGTTGAACAATGTGAGATGCCGATTAAATGATGCCGTGAAGAGTACTCAAAGAGAT 417
|||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 358 AGGATGTTGAACAATGTGAGGTTACGATTAAATGATGCCGTGAAGAACACTCAAAGAGAT 417
Query 418 GGAGGTTTAGAGATTCTTCATCATCAGGAGGAGGAAGTTCTTCAGACTCGCAACGACGAG 477
||| ||||||||||||||| | ||||||||||||||||| ||||| |||||| || |||
Sbjct 418 GGATGTTTAGAGATTCTTC--C-TCAGGAGGAGGAAGTTCATCAGATTCGCAATGAAGAG 474
Query 478 ACAAAGACGAATCAAACTCACGAATTTGAAGGCGGCGAAACTTCTGGTTCTGCAAGTTGG 537
||||||||||||||| | || | ||||| |||||||||||||||||||||
Sbjct 475 ACAAAGACGAATCAA--T------TT-GTAGGCG---AAACTTCTGGTTCTGCAAGTTTC 522
Query 538 TTAGAGAACGAGGATGATATTCTTCACTTTGATGAT 573
|||||||||||||| |||||||||||||||||||||
Sbjct 523 TTAGAGAACGAGGAGGATATTCTTCACTTTGATGAT 558
> Ahg475240 jgi|Araly1|475240|fgenesh2_kg.2__370__AT1G60920.1
Length=569
Score = 460 bits (249), Expect = 4e-129
Identities = 483/591 (82%), Gaps = 35/591 (6%)
Strand=Plus/Plus
Query 1 ATGGGAGGCaaaaaaaC-AAAGATTGAGATTAAGAAGATC-ATAAAC-A-AACCCGCAAA 56
||||||||| | ||||| |||||| ||||||||| ||| | |||| | ||| | |
Sbjct 1 ATGGGAGGC-ACAAAACGAAAGATAGAGATTAAGCCTATCGA-AAACAAGAACATG--AG 56
Query 57 AACGGTTGCTTTCACAAAACGCAGGGAA-GGTCTCTTCCGCAAAGCTTCACAGCTTTGTC 115
| | |||||||| |||||||||| | || ||||||||||||||||||||| |||| ||||
Sbjct 57 ATCAGTTGCTTTTACAAAACGCA-GAAACGGTCTCTTCCGCAAAGCTTCAGAGCTCTGTC 115
Query 116 TCCTCTCTCCAGCCACTCAAATCGCAATCTTAGCGGCTCCTATGACTTCCAAATCTCACG 175
|||||||||| | |||||||||||||||||| ||||| | ||||||| ||||| |
Sbjct 116 TCCTCTCTCCGGGAACTCAAATCGCAATCTTATTAACTCCTCTTTCTTCCAACTCTCATG 175
Query 176 CTTCTTTCTACTCTTTCGGTCATTCCTCTGTCGATAACGTTGTCTCCTCTCTGCTTTATG 235
|||||||||||||||||||||||||||| |||||| |||||||||||||||| ||| |
Sbjct 176 CTTCTTTCTACTCTTTCGGTCATTCCTCCGTCGATCACGTTGTCTCCTCTCTCCTTCACA 235
Query 236 ACCATCCTCCTCTTACGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGAAG 295
| || ||||||||| || || ||||||| ||||| |||||| ||||||||||||||||||
Sbjct 236 ATCAGCCTCCTCTTCCGACAGACCAAGAGAACAGATCAGGGGTAGGGTTTTGGTGGGAAG 295
Query 296 ACAAA-CGTTTTGAC-GTATCGGAGAACGTTGAGGAGTTAAAAGAGGCGGTCGATGCTGT 353
|| || | ||| ||| | || |||||||||||| ||||| ||||||||| |||| || ||
Sbjct 296 ACCAAGCCTTT-GACAG-ATTGGAGAACGTTGACGAGTTGAAAGAGGCGATCGACGCGGT 353
Query 354 TTCGAGGATGTTGAACAATGTGAGATGCCGATTAAATGATGCCGTGAAGAGTACTCAAAG 413
|||||||||||||||||||||||| | |||||| |||||||||||||||| | ||||||
Sbjct 354 TTCGAGGATGTTGAACAATGTGAGGTTACGATTAGATGATGCCGTGAAGAGCAATCAAAG 413
Query 414 AGATGGAGGTTTAGAGATTCTTCATCATCAGGAGGAGGAAGTTCTTCAGACT-CGCAACG 472
||||||| |||||| || | | |||| ||||||||| ||||||||| || |||||||
Sbjct 414 AGATGGAAGTTTAGTGAAT-T--ATCA---GGAGGAGGAGGTTCTTCAG-CTTCGCAACG 466
Query 473 ACGAGACAAAGACGAATCAAACTCACGAATTT-GAAGGCGGCGAAACTTCTGGTTCTGCA 531
| ||||| | | | ||||| | || || || ||||| | ||||||||| |||||||
Sbjct 467 A--AGACACA-A--A-TCAAATT-ACCAAATTCGAAGGTG---AAACTTCTGCTTCTGCA 516
Query 532 AGTTGGTTAGAGAACGAGGATGATATTCTTCACTTTGATGAT-GATTTTTA 581
|||| |||| ||||| ||| |||| ||| ||| | |||||| | ||||||
Sbjct 517 AGTTTGTTAAAGAACTTGGAGGATAATCTACACATCGATGATTG-TTTTTA 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22149414777
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5