BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60890.2
Length=2918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475243 jgi|Araly1|475243|fgenesh2_kg.2__373__AT1G60890.1 3954 0.0
Ahg471229 jgi|Araly1|471229|fgenesh2_kg.1__1183__AT1G10900.1 1916 0.0
> Ahg475243 jgi|Araly1|475243|fgenesh2_kg.2__373__AT1G60890.1
Length=2921
Score = 3954 bits (2141), Expect = 0.0
Identities = 2392/2509 (95%), Gaps = 33/2509 (1%)
Strand=Plus/Plus
Query 414 GCCTGCAGAGAGAGTATTCTCAAATGGTGATGTTTATTCTGGTCAACTCAAAGGAACACT 473
||||| |||||| | ||||||||||||||||||||||| ||||||||| |||||||| ||
Sbjct 442 GCCTGTAGAGAGGGAATTCTCAAATGGTGATGTTTATTTTGGTCAACTTAAAGGAACCCT 501
Query 474 TCCTCATGGGAAGGGAAAGTATGCATGGCCTGATGGTATCATTTATGAGGGTGATTGGGA 533
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct 502 TCCTCATGGGAAGGGAAAGTATGCATGGCCTGATGGAATCGTTTACGAGGGTGATTGGGA 561
Query 534 AGAAGGGAAGATATCCGGGAGAGGAAAGCTTATGTGGTCATCTGGAGCTAAATATGAGGG 593
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGAAGGGAAAATATCCGGGAGAGGAAAGCTTATGTGGTCATCTGGAGCTAAATATGAGGG 621
Query 594 AGATTTCTCCGGGGGATACCTTCATGGCTTTGGTACATTGACTTCGCCTGATGGATCTGT 653
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 622 GGATTTCTCCGGGGGATATCTTCATGGCTTTGGCACATTGACTTCGCCTGATGGATCTGT 681
Query 654 CTACGCTGGAGCATGGAGGATGAATGTTA-GGCACGGTCTAGGAAGGAAAGAGTATTGTA 712
|||||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||
Sbjct 682 CTACGCTGGAGCATGGAGAATGAATG-TACGGCACGGTCTTGGAAGGAAAGAGTATTGTA 740
Query 713 ACTCAGATGTATATGATGGCTCATGGAGAGAAGGATTACAAGATGGTAGTGGTAGTTATT 772
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 741 ACTCAGATGTATATGATGGCTCATGGAGAGAAGGATTACAAGATGGCAGTGGTAGTTATT 800
Query 773 CTTGGTACAATGGAAATAGGTTCATTGGGAACTGGAAAAAAGGTAAAATGTCTGGCAGAG 832
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 801 CTTGGTACAATGGAAATAGGTTCATTGGGAACTGGAAAAAGGGTAAAATGTCTGGCAGAG 860
Query 833 GGGTTATGAGCTGGGCAAATGGTGATCTCTTTAATGGGTTTTGGTTGAATGGTCTTAGAC 892
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 861 GTGTTATGAGCTGGGCAAATGGTGATCTCTTTAACGGGTTTTGGTTGAATGGTCTTAGAC 920
Query 893 ATGGATCTGGAGTTTATAAGTATGCGGATGGTGGTTTTTATTTTGGAACCTGGTCACGTG 952
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 921 ATGGATCTGGAGTTTATAAGTATGCCGATGGCGGTTTTTATTTTGGAACCTGGTCACGTG 980
Query 953 GCCTAAAAGATGGGAGTGGAGTCTTTTATCCTGCTGGAAGTAAACACCCTTCTCTAAAGA 1012
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 981 GCCTAAAAGATGGGAGTGGAGTCTTTTATCCTGCTGGAAGTAAACACCCGTCTCTAAAGA 1040
Query 1013 AGTGGCATCGGCATTTTGGGTACGATGACACCGGCAACTTCCTCCTCTCTCATAATTCAA 1072
||||||||||||||||||| || |||||||| || || |||||||| |||||||||||||
Sbjct 1041 AGTGGCATCGGCATTTTGGTTATGATGACACTGGAAATTTCCTCCTTTCTCATAATTCAA 1100
Query 1073 CAATAAATATTGATGATTTACGGACTTCAAAAGCTGTATCACGAAGTCTTTCTGAGTTAA 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 CAATAAATATTGATGATTTACGGACTTCAAAAGCTGTATCACGAAGTCTTTCTGAGTTAA 1160
Query 1133 CCACAACAAGCGGACTGACAAGAACTTCGGAGAGGTATCCTGATGATTACTGGAGCACCA 1192
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1161 CCACAACAAGTGGACTGACGAGAACTTCGGAGAGGTATCCTGATGATTATTGGAGCACCA 1220
Query 1193 GTGATCCC-CCTAGAGACTTTATGCATCATGGGCCTTCATCCAAATCTGCACGGTCTGTT 1251
|||| ||| || ||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 1221 GTGA-CCCTCCAAGAGACTTTCTGCATCATGGGCCCGCATCCAAGTCTGCACGGTCTGTT 1279
Query 1252 GACTCTGGTCAAAGCGAGATCCGGGATAAGAACCCTATTGTTTTTGAAAGGGAATACATG 1311
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1280 GACTCTGGTCAAAGCGAGATACGGGATAAGAACCCTATCGTTTTTGAAAGGGAATACATG 1339
Query 1312 CAAGGAGTTTTGATTAAAGAACGAATTATGAGTTCTATCGACATGTCACACAGGGCTAGA 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 CAAGGAGTTTTGATTAAAGAACGAATTATGAGTTCTATCGACATGTCACACAGGGCTAGA 1399
Query 1372 CCTTTGAATCTTACTAAAGAAGTCACAGTTAGCGCTTGTGTGAGCTTTCTAGGGGGGAAA 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 CCTTTGAATCTTACTAAAGAAGTCACAGTTAGCGCTTGTGTGAGCTTTCTAGGGGGGAAA 1459
Query 1432 TGGAACCATTATCTAATGCTTAACCTCCAACTCGGTATCAGGTATACTGTTGGGAAAATC 1491
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1460 TGGAACCATTATCTAATGCTTAATCTCCAACTCGGTATCAGGTATACTGTTGGGAAAATC 1519
Query 1492 ACACCAGTGCCTCCGCGGGAAGTTCGTGCTTCTGACTTTAGTGAAAGAGCCAGAATCATG 1551
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 ACACCAGTGCCTCCACGGGAAGTTCGTGCTTCTGACTTTAGTGAAAGAGCCAGAATCATG 1579
Query 1552 ATGTTCTTCCCTAGAAACGGTTCCCAGTATACACCTCCACACAAGTCTATTGATTTCGAT 1611
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1580 ATGTTCTTCCCTAGAAACGGTTCCCAGTATACACCTCCACACAAGTCCATTGATTTTGAT 1639
Query 1612 TGGAAAGACTATTGTCCTATGGTTTTCAGGAATTTAAGGGAGATGTTCAAGTTAGATGCT 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 TGGAAAGACTATTGTCCTATGGTTTTCAGGAATTTAAGGGAGATGTTCAAGTTAGATGCT 1699
Query 1672 GCAGACTACATGATGTCTATATGTGGCGATGATGGCTTGAGGGAAATTTCTTCCCCTGGG 1731
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct 1700 GCAGACTACATGATGTCTATTTGTGGCGATGATGGCCTGAGGGAAATTTCGTCCCCTGGG 1759
Query 1732 AAAAGTGGCAGTATCTTCTACCTTTCTCATGACGACAGATTTGTGATAAAGACATTAAAA 1791
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1760 AAAAGTGGCAGTATCTTCTACCTTTCCCACGACGACAGATTTGTGATAAAGACATTAAAA 1819
Query 1792 AGATCTGAGTTGAAGGTTCTTCTTAGGATGTTGCCTAGGTACTATGAACATGTAGGAGAC 1851
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||
Sbjct 1820 AGATCTGAGTTGAAGGTTCTACTCAGGATGTTGCCCAGGTACTATGAACATGTAGGAAAC 1879
Query 1852 TATGAAAATACGCTCATAACGAAATTTTTTGGAGTTCACAGAATAAAACTCAAGTGGGGT 1911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 TATGAAAATACGCTCATAACGAAATTTTTTGGAGTTCACAGAATAAAACTCAAGTGGGGT 1939
Query 1912 AAAAAGGTACGCTTTGTGGTCATGGGGAATATGTTTTGCACAGAATTGAAGATTCATCGT 1971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 AAAAAGGTACGCTTTGTGGTCATGGGGAATATGTTTTGCACAGAATTGAAGATTCATCGC 1999
Query 1972 CGCTATGACCTAAAGGGCTCAACACAAGGGAGATATACAGAAAAGAATAAAATTGGAGAA 2031
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2000 CGCTATGACCTAAAGGGCTCAACTCAAGGGAGATATACAGAAAAGAATAAAATTGGAGAA 2059
Query 2032 AAGACTAC-ATTGAAAGATCTTGATCTAGCTTATGAATTTCATATGGACAAGCTGCTGCG 2090
|||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2060 AAGACTACCAT-GAAAGATCTTGATCTTGCTTATGAATTTCATATGGACAAGCTGCTGCG 2118
Query 2091 AGAGGCTCTCTTCAAGCAAATTATTTTAGACTGTTCGTTCTTGGAATCTCTTCAAATCCT 2150
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2119 AGAGGCTCTCTTCAAGCAAATTATTTTAGACTCTTCGTTCTTGGAATCTCTGCAAATCCT 2178
Query 2151 TGATTACAGTCTTCTGTTGGGATTACATTTTAGAGCCCCCGATCCACTTACTGATATCCT 2210
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 2179 TGATTACAGTCTTCTGTTGGGATTACATTTTAGAGCTCCTGATCCACTTACTGATATCCT 2238
Query 2211 GGAGCCTCCCAATGAAATGTCAGATCAAGAAAGTGATAGTGTTGGTTCGGTTGACGTCAA 2270
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2239 GGAGCCTCCCAATGAAATGTCAGATCAAGAAAGTGATAGTGTTGCTTCTGTTGACGTCAG 2298
Query 2271 TTTGCCTCGTGAACCCTCCATTCCTCCAAAAGGGCTATTAATGGTTACCCATGAACCCAA 2330
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2299 TTTGCCTCGTGAACCCGCCATTCCTCCAAAAGGGCTATTAATGGTTACCCACGAACCCAA 2358
Query 2331 TTCCGTTAATACCGCCCCGGGTCCTCACATCAGAGGAAGCACACTACGAGCATTCTCTGT 2390
|||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 2359 TTCCGTTAATACCGCCCCAGGTCCTCACATCAGAGGTAGCACACTGCGAGCCTTCTCTGT 2418
Query 2391 TGGCGAGAAAGAAGTTGATCTTATTCTACCTGGAACTGCAAGGCTCCGGGTACAGTTAGG 2450
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2419 TGGCGAGCAAGAAGTTGATCTTATTCTACCTGGAACTGCAAGGCTCCGGGTACAGTTAGG 2478
Query 2451 AGTGAACATGCCAGCTCAAGCCCACCACAAACTCGGCCAAGACAACG-AGGAATCAGGAA 2509
|||||||||||||||||||||||||||||||||| | ||||||| || | ||||||||||
Sbjct 2479 AGTGAACATGCCAGCTCAAGCCCACCACAAACTCCGTCAAGACA-CGGAAGAATCAGGAA 2537
Query 2510 CGGTCGAGCTCTTTGAAGTATATGATGTGGTTGTATACATGGGCATCATTGACATCCTCC 2569
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2538 CTGTCGAGCTCTTTGAAGTATATGATGTGGTTGTGTACATGGGTATCATTGACATCCTCC 2597
Query 2570 AAGAGTACAACATGAAGAAGAAAGTGGAACATACTTGCAAATCTATGAAATATGATCCAA 2629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2598 AAGAGTACAACATGAAGAAGAAAGTGGAACATACTTGCAAATCTATGAAATATGATCCGA 2657
Query 2630 TGACAATTTCAGCCATCGAGCCTACACTTTACTCTAAACGATTCATCGATTTCCTCCTTA 2689
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2658 TGACAATTTCAGCCATCGAGCCAACACTTTACTCTAAACGATTCATCGATTTCCTCCTTA 2717
Query 2690 AGGTATTCCCAGAAAAAGCATagagagagagagaTATCAACGGACCATTGATCTTCCTAA 2749
|||||||||||||||||||||||||| | ||| | | || | | | ||
Sbjct 2718 AGGTATTCCCAGAAAAAGCATAGAGA-A-AGACCT-T-AA-G-A---T-GA--------- 2758
Query 2750 AGATGAAAGGTTCCATGATTTGACTCGACCGATAATATTCTTTCCTGTTCATAAGCCATA 2809
|||| | ||| ||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 2759 -GATG---G-TTC-ATGATTTGACTCGGTCGATAATATTCTTTCCTGTCCATAAGCCATA 2812
Query 2810 AAAAGACTCTGAGGGATTTGGCTCGTAATCTTCTTTCGCCCTTATGTACACTAACATTTA 2869
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2813 AAAAGACTCTGAGGGATTTGGCTCGTAATCTTCTATCGTCCTTATGTACACTAACATTTA 2872
Query 2870 GGATCTTATATACTTGAAAAAGTTTTCGTATATTATTATTATTGAGTAG 2918
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2873 GGATCTTATATACTTCAAAAAGTTTTCGTATATTATTATTATTGAGTAG 2921
Score = 259 bits (140), Expect = 8e-68
Identities = 158/166 (95%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 192 TTTCTTCTTCTCCAGTTTTCAAGGAGATTCTTAAGCTCCATCTCTTGACAGGGGTGGATC 251
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 138 TTTCTTCTTCTCCAGTTTTCAAGGAGATTCTTAAGCTCCATCTCGTGACAGGGATGGACC 197
Query 252 ATTGGTGAATTCTTGAGGTCCAGGAGAATCTGTCATTTTCAACACATTGTGTGGAATCAT 311
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 ATTGGTGAATT-TTGAGGTCCAGGAGAATCTGTCATTTTCAACACATTGTGTGGAATCAT 256
Query 312 CTGA-GAGGTTTGGTAAATAGATAG-AACAAGGATCTATGAAGATC 355
|||| |||||||||||||| || || ||||||||||||||||||||
Sbjct 257 CTGAAGAGGTTTGGTAAATCGA-AGGAACAAGGATCTATGAAGATC 301
Score = 193 bits (104), Expect = 8e-48
Identities = 129/140 (92%), Gaps = 6/140 (4%)
Strand=Plus/Plus
Query 17 GaaaaaaaaaaaGTTTGGCAAAAAAGAAGACTCTTTGAGACTGAGAGGACTTAGCGTGCA 76
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GAAAAAAAAAAAGTTGGGCAAAAAAGAAGACTCTTGGAGACTGAGAGGACTTAGCGTGCA 60
Query 77 T-GG---GAACATTTATA-GACAGACGAAATTCTCCGAATTGAAGAAGAGCTTCTCTATC 131
| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGGAACGAACATTTATACGA-AGACGAAATTCTCCGAATTGAAGAAGAGCTTCTCTATC 119
Query 132 TTCAACGAAGAAGACGACTT 151
| ||||||||||||||||
Sbjct 120 AACTACGAAGAAGACGACTT 139
> Ahg471229 jgi|Araly1|471229|fgenesh2_kg.1__1183__AT1G10900.1
Length=2365
Score = 1916 bits (1037), Expect = 0.0
Identities = 1918/2332 (82%), Gaps = 106/2332 (5%)
Strand=Plus/Plus
Query 416 CTGCAGAGAGAGTATTCTCAAATGGTGATGTT-TATTCTGGTCAACTCAAAGGAACACTT 474
||| ||| |||| |||| ||||||||||| || ||||||||| || | |||||| ||||
Sbjct 14 CTGGAGATAGAGAATTCCCAAATGGTGAT-TTCTATTCTGGTGAAGTTAAAGGATTACTT 72
Query 475 CCTCATGGGAAGGGAAAGTATGCATGGCCTGATGGTATC-ATTTATGAGGGTGATTGGGA 533
||| ||||||||||||||||||| ||| | ||||| | | || || || |||||||||||
Sbjct 73 CCTAATGGGAAGGGAAAGTATGCGTGGTCAGATGG-AACTATCTACGAAGGTGATTGGGA 131
Query 534 AGAAGGGAAGATATCCGGGAGAGGAAAGCTTATGTGGTCATCTGGAGCTAAATATGAGGG 593
|||| || || || || | ||| |||||||| ||||||||||||||||||||||||||
Sbjct 132 TCAAGGCAAAATCTCTGGTAAAGGGAAGCTTATTTGGTCATCTGGAGCTAAATATGAGGG 191
Query 594 AGATTTCTCCGGGGGATACCTTCATGGCTTTGGTA-CATTGACTTCGCCTGATGGATCTG 652
||||||||| || |||||||||||||| ||||| | || |||| || ||||||| |||||
Sbjct 192 AGATTTCTCTGGTGGATACCTTCATGGTTTTGGCACCA-TGACCTCACCTGATGAATCTG 250
Query 653 TCTA-CGCTGGAGCATGGAGGATGAATGTTAGGCACGGTCTAGGAAGGAAAGAGTATTGT 711
|||| | |||||| ||||| |||||||| ||||| || || || ||||||||||||| |
Sbjct 251 TCTATAG-TGGAGCCTGGAGAATGAATGTGAGGCATGGGCTTGGCAGGAAAGAGTATTCT 309
Query 712 AACTCAGATGTATATGATGGCTCATGGAGAGAAGGATTACAAGATGGTAGTGGTAGTTAT 771
||||||||| ||||||| || | |||| ||||||||||||||| || |||||||||||
Sbjct 310 AACTCAGATCTATATGACGGTTTGTGGAAAGAAGGATTACAAGACGGGCGTGGTAGTTAT 369
Query 772 TCTTGGTA-CAATGGAAATAGGTTCATTGGGAACTGGAAAAAAGGTAAAATGTCTG-GCA 829
|||||| | |||||||||||||| ||| ||||| |||||||| ||||| |||| || | |
Sbjct 370 TCTTGG-ACCAATGGAAATAGGTACATAGGGAATTGGAAAAAGGGTAAGATGTGTGAG-A 427
Query 830 GAGGGGTTATGAGCTGGGCAAATGGTGATCTCTT-TAATGGGTTTTGGTTGAATGGTC-T 887
|||| |||||||| ||||| ||||||||||| || | | || |||||||||||||| | |
Sbjct 428 GAGGAGTTATGAGATGGGCCAATGGTGATCT-TTATGACGGTTTTTGGTTGAATGG-CTT 485
Query 888 TAGACATGGATCTGGAGTTTATAAGTATGCGGATGG-TGGTTTTTATTTTGGAACCTGGT 946
||||||||| |||||||||||||||| ||| ||||| | |||| |||| ||| |||||||
Sbjct 486 TAGACATGGCTCTGGAGTTTATAAGTTTGCTGATGGAT-GTTTATATTATGGGACCTGGT 544
Query 947 -CACGTGGCCTAAAAGATGGG-AGTGGAGTCTTTTATCCTGCTGGAAGTAAACACCCTTC 1004
|| | ||||||||||| ||| || ||||||||||||||||||||||||||||| || ||
Sbjct 545 CCA-GAGGCCTAAAAGACGGGAAG-GGAGTCTTTTATCCTGCTGGAAGTAAACAACCATC 602
Query 1005 TCTAAAGAAGTGG-CATCGGCAT-T-TTGGGTACGATGACACCGGCAACTTCCTCCTCTC 1061
||||||||||||| | || || | | ||| || |||||||| || || || | || ||
Sbjct 603 TCTAAAGAAGTGGTC-TC-GC-TCTCTTGAATATGATGACACTGGAAAGTTTGTACTTTC 659
Query 1062 TCATAATTCAACAATAAATATTGATGATTTACGGACTTCAAA-AGCTGT-ATCACGAAGT 1119
|| || | || || ||||| |||| || || ||| || ||| | |||| | ||| ||||
Sbjct 660 TCGTAGTGCATCAGTAAATGTTGAGGAGCTAAGGAGTTTAAACA-CTGTGA-CACAAAGT 717
Query 1120 CTTTCTGAGTTAACCACAACAAGCGGACTGACAAGAACTTCGGAGAGGTATCCTGATGAT 1179
|||||| | | | | ||| | | |||| || || | || | ||| ||
Sbjct 718 CTTTCT--G-TGA--A-AAC-TTCAG-CTGA-TAG--GTT--G-CCGG-A---TGA-AAT 758
Query 1180 TACTGGAGCACCAGTGATCCCCCTAGAGACTTT--ATGCATCATGGGCC-TTCATCCAAA 1236
| | |||| ||| ||||||| || ||||||||| ||| ||||||||| || ||| ||
Sbjct 759 T-C-GGAGGACCTGTGATCCTCCAAGAGACTTTACATG--TCATGGGCCGTT-ATCTAAG 813
Query 1237 TCTGCACGGTCTGTTGACTCTGGTCAAAGCGAGATCCGGGATAAG-AACCCTATTGTTTT 1295
|||||||||| | ||| ||| || | ||||| | | ||| || |||| ||||||||
Sbjct 814 TCTGCACGGTTTTTTGGCTCAGGCCTAAGCGTGGGACAAGAT-AGAAACCGTATTGTTTA 872
Query 1296 TGAAAGGGAATACATGCAAGGAGTTTTGATTAAAG-AACGAATTATGAGTTCTATCGACA 1354
||||||||||||||||||||||||||||||| || ||| || ||||| ||| | ||||
Sbjct 873 CGAAAGGGAATACATGCAAGGAGTTTTGATTAGAGAAAC-TATCATGAGCTCTGTTGACA 931
Query 1355 TGTCACACAGGGCTAGACCTTTGA-ATCTTACTAAAGAAGTCACAGTTAGCG-CTTGT-G 1411
|||||||| || ||| | | ||| | |||||||||||| | || | ||| |
Sbjct 932 GGTCACACAAAATTAAACC-TCCACATCGTCCTAAAGAAGTCAGGGCCAG-GTCTT-TAC 988
Query 1412 TGAGCTTTC-TAGGGGGGAAATGGAACCATTATCTAATGCTTAACCTCCAACTCGGTATC 1470
||| ||||| || ||||| || || ||||||||||||| || |||||||| ||||||
Sbjct 989 TGACCTTTCTTATGGGGG-AACACAATTATTATCTAATGCTAAATCTCCAACTTGGTATC 1047
Query 1471 AGGTATACTGTTGGGAAAATCACACCAGTGCCTCCGCGGGAAGTTCGTGCTTCTGACTTT 1530
|||||||||||||| ||||| |||||||||||| ||| ||||| |||||||||||||||
Sbjct 1048 AGGTATACTGTTGGAAAAATTACACCAGTGCCTAGGCGAGAAGTGCGTGCTTCTGACTTT 1107
Query 1531 AGTGAAAG-A-GCCAGAATC-ATGATGTTCTTCCCTAGAAACGGTTCCCAGTATACACCT 1587
| | ||| | || |||| | | |||||||||||||||| |||| ||| | | ||| |||
Sbjct 1108 -G-GTAAGAACGCTAGAA-CAAAGATGTTCTTCCCTAGAGACGGCTCCAATTTTACGCCT 1164
Query 1588 CCACACAAGTCTATTGATTTCGATTGGAAAGACTATTGTCCTATGGTTTTCAGGAATTTA 1647
|||||||| ||| | || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1165 CCACACAAATCTGTCGACTTCTCCTGGAAAGACTATTGTCCTATGGTTTTCAGGAATTTA 1224
Query 1648 AGGGAGATGTTCAAGTTAGATGCTGCAGACTACATGATGTCTATATGTGGCGATGATGGC 1707
|| ||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct 1225 CGGCAGATGTTCAAGTTAGATGCTGCAGAGTATATGATGTCTATTTGTGGTGATGATGGC 1284
Query 1708 TTGAGGGAAATTTCTTC-CCCTGGGAAAAGTGGCAGTATCTTCTACCTTTCTCATGACGA 1766
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1285 CTGACAGAAATTTCTTCTCCC-GGGAAAAGTGGCAGTATCTTCTACCTTTCTCATGACGA 1343
Query 1767 CAGATTTGTGATAAAGACATTAAAAAGATCTGAGTTGAAGGTTCTTCTTAGGATGTTGCC 1826
|||||||||||| ||||||||||||| |||||||||| ||||||| || || ||||||||
Sbjct 1344 CAGATTTGTGATCAAGACATTAAAAAAATCTGAGTTGCAGGTTCTACTCAGAATGTTGCC 1403
Query 1827 TAGGTACTATGAACATGTAGGAGACTATGAAAATACGCTCATAACGAAATTTTTTGGAGT 1886
|| |||||||||||||||||| ||| ||||||| || || ||||| ||||||||||||||
Sbjct 1404 TAAGTACTATGAACATGTAGGGGACCATGAAAACACACTTATAACCAAATTTTTTGGAGT 1463
Query 1887 TCACAGAATAAAACTCAAGTGGGGTAAAAAGGTACGCTTTGTGGTCATGGGGAATATGTT 1946
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TCACAGAATAACACTCAAGTGGGGTAAAAAGGTACGCTTTGTGGTCATGGGGAATATGTT 1523
Query 1947 TTGCACAGAATTGAAGATTCATCGTCGCTATGACCTAAAGGGCTCAACACAAGGGAGATA 2006
|||||||||||||||||| |||||||| ||||| |||||||| ||| | ||||||||||
Sbjct 1524 TTGCACAGAATTGAAGATCCATCGTCGTTATGATCTAAAGGGTTCATCTCAAGGGAGATT 1583
Query 2007 TACAGAAAAGAATAAAATTGGAGAAAAGACTACATTGAAAGATCTTGATCTAGCTTATGA 2066
||| ||||||| |||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1584 TACTGAAAAGATTAAAATCCAAGAGAAGACCACATTGAAAGATCTTGATCTAGCTTATGA 1643
Query 2067 ATTTCATATGGACAAGCTGCTGCGAGAGGCTCTCTTCAAGCAAATT-ATTTTAGACTGTT 2125
||||||||||||||||||| | || || || ||||||||||||||| | || |||||| |
Sbjct 1644 ATTTCATATGGACAAGCTGTTACGGGAAGCCCTCTTCAAGCAAATTTACTT-AGACTGCT 1702
Query 2126 CGTTCTTGGAATCTCTTCAA-ATCCTTGATTACAGTCTTCTGTTGGGATTACATTTTAGA 2184
||||||||||||| || || ||| |||| ||||||||| | |||||||||||||||||
Sbjct 1703 CGTTCTTGGAATCGCTG-AACATCATTGACTACAGTCTTTTACTGGGATTACATTTTAGA 1761
Query 2185 GCCCCCGATCCA-CTTACTGATATCCTGGAGCCTCCCAATGAAATGTCAGATCAAGAAAG 2243
|| || | ||| |||| ||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 1762 GCTCCTGG-CCAACTTAATGATATCCTAGAGCCTCCAAATGCAATGTCAGATCAAGAAAG 1820
Query 2244 TGATAGTGTTGGTTCGGTTGACGTCAATTTGCCTC-GTGAACCCTCCATTCCTCCAAAAG 2302
| | | | ||| || |||||| |||| ||| | |||| |||||||||||||||||
Sbjct 1821 CG-T--T-TC--TTCTGTAGACGTCGGTTTGGCTCAG-GAACTCTCCATTCCTCCAAAAG 1873
Query 2303 G---GCTATTAATGGTTACCCATGAACCCAATTCCGTTAATACCGCCCCGGGTCCTCACA 2359
| ||| || |||| || ||||||||||||||||| ||||| || |||||||||||||
Sbjct 1874 GATTGCT-TT--TGGTAACTCATGAACCCAATTCCGTGAATACTGCACCGGGTCCTCACA 1930
Query 2360 TCAGAGGAAGCACACT-ACGAGCATTCTCTGTTGGCGAGAAAGAAGTTGATCTTATTCTA 2418
|||||||||||||||| | ||||||| |||||||||||| | |||||||||||||||||
Sbjct 1931 TCAGAGGAAGCACACTCA-GAGCATTTTCTGTTGGCGAGCAGGAAGTTGATCTTATTCTT 1989
Query 2419 CCTGGAACTGCAAGGCTCCGGGTACAGTTAGGAGTGAACATGCCAGCTCAAGCCCACCAC 2478
|| |||||||||||||| |||||||| ||||||||||||||||| || ||||| || |||
Sbjct 1990 CCCGGAACTGCAAGGCTGCGGGTACAATTAGGAGTGAACATGCCGGCCCAAGCTCATCAC 2049
Query 2479 AAACTCGGCCAAGACAACGAGGAATCAG-GAACGGTCGAGCTCTTTGAAGTATATGATGT 2537
|| || | ||||| || || || | || | | ||||||||||||||||| |||||
Sbjct 2050 AAGCTTATTGAGGACAAGGAAGAGTCGGCGA-CAATTGAGCTCTTTGAAGTATACGATGT 2108
Query 2538 GGTTGTATACATGGGCATCATTGACATCCTCCAAGAGTACAACATGAAGAAGAAAGTGGA 2597
|||||| |||||||| ||||| || ||| | || ||||| |||| ||||||||||||||
Sbjct 2109 GGTTGTGTACATGGGAATCATAGATATCTTGCAGGAGTATAACACCAAGAAGAAAGTGGA 2168
Query 2598 ACATACTTGCAAATCTATGAAATATGATCCAATGACAATTTCAGCCATCGAGCCTAC-AC 2656
|||||||||||| ||| || | |||||||| |||||||| || | | ||| ||| | |
Sbjct 2169 ACATACTTGCAAGTCTTTGCAGTATGATCCGATGACAATATCTGTGACCGAACCTTCCA- 2227
Query 2657 TTTACTCTAAACGATTCATCGATTTCCTCCTTAAGGTATTCCCAGAA-AAAG 2707
||||||| ||||| || || |||| || | ||||||||||||||| ||||
Sbjct 2228 TTTACTCAAAACGCTTTGTCAATTTTCTACACAAGGTATTCCCAGAAGAAAG 2279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110156988540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5