BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60900.1 Length=2085 Score E Sequences producing significant alignments: (Bits) Value Ahg475241 jgi|Araly1|475241|fgenesh2_kg.2__371__AT1G60900.1 2758 0.0 Ahg338287 jgi|Araly1|338287|fgenesh1_pg.C_scaffold_2000386 774 0.0 > Ahg475241 jgi|Araly1|475241|fgenesh2_kg.2__371__AT1G60900.1 Length=2039 Score = 2758 bits (1493), Expect = 0.0 Identities = 1905/2088 (91%), Gaps = 91/2088 (4%) Strand=Plus/Plus Query 7 TTTAATTCATCCTCCATT-AGAATCCCTAGGGTTTTCTTCCATACACAATCAGACTCAAC 65 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | Sbjct 1 TTTAATTCATCCTCCATTGAAAATCCCTAGGGTTTTCTTCCATACACAATCAGACT---C 57 Query 66 GATAAGTACCAATCGGAGAAGAGA-TCACAAGTGGATGATGAGTTACGAAGGCAACGGAG 124 | ||||| ||||||||||| || | || ||||||||| ||||||||| ||||||| Sbjct 58 -----G-ACCAACCGGAGAAGAGATTC-CGAGAGGATGATGACTTACGAAGGTAACGGAG 110 Query 125 ATGGTGTCGCTATCTCCACCGAAAACCACAACGAGAACTACATATCTCTAGAGAGCTCGC 184 |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 111 ATGGCGTCGCTATCTCCACCGAAAACCACAGCGAAAACTACATATCTCTAGAGAGCTCGC 170 Query 185 CTTTTCATGAAGACTCC-AAGTCTCGAGAAT-CTCATG-A-TCT-TAA--AAAG-GATTC 236 |||||| || | || || |||| || ||||| | || || | || || Sbjct 171 CTTTTC----AGTC-CCTTGGTGGCGAGGATGGTCATGAAGACTCCAAGTCTCGAGAATC 225 Query 237 TTCGAAAATCAGTGAGAAA-GA--CAAT-GAAAATGGACGTGATAAAGACGGAAACAAAG 292 || | ||| ||| ||| || | | |||||| | |||| |||||| || || || Sbjct 226 -TC-ATGATC-TTGA-AAAGGATTC-TTCGAAAAT-CA-GTGAGAAAGACAGAGAC-AA- 276 Query 293 ATCGTGATCGTgagaaggatcgtgatagggagaagagcagagacagagatagggagaaaa 352 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 277 A----GATCGTGAGAAGGATCGTGATAGGGAGAAGAGCAGAGACAGAGATAGGGAGAAAA 332 Query 353 gcagagatagagatagggatagggagagaagtaaggataggCAACGAGACCGTCATCATA 412 || |||||||||||||||||||||||||| |||||| ||||||| || ||||||| Sbjct 333 GC------AGAGATAGGGATAGGGAGAGAAGTAAAGATAGGGAACGAGATCGCCATCATA 386 Query 413 GAGATCGTCATAGGGACCGTAGCAGAGAACGTAGT-------GAGAA----A-AGAGATG 460 ||||||||||||||||||||||||||||||||||| ||||| | ||||||| Sbjct 387 GAGATCGTCATAGGGACCGTAGCAGAGAACGTAGTGAGAAAAGAGAACGTGAGAGAGATG 446 Query 461 ATTTGGATGATGATCATCATC-GCAGAAGTCGAGACCGTGATAGGAGGAGGTCTCGCGAT 519 ||||||||||||||||||||| || || || ||||| |||||||||||||||||| Sbjct 447 ATTTGGATGATGATCATCATCATCA-CAG--AAG-TCGTGACAGGAGGAGGTCTCGCGAT 502 Query 520 CGAGACAGAGAGGTGAGACACAGGCGACGGTCACGCTCTCGGTCAAGGAGCCGCTCTGAA 579 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 CGAGACAGAGAGGTCAGACACAGGCGACGGTCACGCTCTCGGTCAAGGAGCCGCTCTGAA 562 Query 580 CGTAGGTCAAGGTCAGAACATAGACATAAGTCTGAACATAG---A---TCACGCTCACGG 633 || |||||||||||||||||||| ||||||||||||||||| | |||||||||| | Sbjct 563 CGCAGGTCAAGGTCAGAACATAGGCATAAGTCTGAACATAGATCACGTTCACGCTCACAG 622 Query 634 TCGCGATCAAGGTCAAAGAGCAAGAGGAGAAGTGGATTTGATATGGCGCCTCCTGATATG 693 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 623 TCGCGATCAAGGTCAAAAAGCAAGAGGAGAAGTGGATTTGATATGGCGCCTCCTGATATG 682 Query 694 TTAGCTGCTACTGCTGTTGCTGCAGCAGGCCAGGTTCCTAGTGTGCCAACTACTGCTACT 753 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 683 TTAGCTGCTACTGCTGTTGCTGCGGCAGGCCAGGTTCCTAGTGTGCCAACTACTGCTACT 742 Query 754 ATTCCAGGGATGTTCTCAAACATGTTTCCAATGGTCCCTGGTCAGCAACTAGGTGCGCTT 813 ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 743 ATTCCAGGGATGTTCCCAAACATGTTCCCAATGGTCCCTGGTCAGCAACTGGGTGCGCTT 802 Query 814 CCTGTACTGCCAGTTCAGGCAATGACTCAACAGGCAACTAGGCATGCTCGGCGAGTCTAT 873 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 803 CCTGTACTGCCAGTTCAGGCAATGACTCAGCAGGCAACTAGGCATGCTCGGCGGGTCTAT 862 Query 874 GTTGGTGGCCTTCCACCAACTGCTAATGAACAGTCGGTGTCAACGTTCTTTAGCCAAGTG 933 ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 863 GTTGGTGGCCTTCCACCAACTGCAAATGAACAGTCGGTGGCAACGTTCTTTAGCCAAGTG 922 Query 934 ATGTCGGCCATTGGGGGAAACACTGCTGGGCCAGGTGATGCGGTGGTCAATGTTTATATA 993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 923 ATGTCGGCCATTGGGGGAAACACTGCTGGGCCAGGTGATGCGGTGGTCAATGTTTATATA 982 Query 994 AACCACGAAAAGAAGTTTGCTTTTGTAGAGATGAGATCTGTTGAGGAGGCTAGTAACGCA 1053 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 983 AACCACGAAAAGAAGTTCGCTTTTGTAGAGATGAGATCTGTTGAGGAGGCTAGTAACGCA 1042 Query 1054 ATGGCATTAGACGGCATTATATTAGAGGGAGTTCCTGTAAAGGTGAGGAGGCCAACTGAC 1113 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1043 ATGGCATTAGATGGCATTATATTAGAGGGAGTTCCTGTAAAGGTAAGGAGGCCAACTGAC 1102 Query 1114 TATAACCCGTCTCTTGCTGCAACTCTTGGTCCGAGCCAGCCTAATCCCAACCTCAACTTA 1173 ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1103 TATAACCCGTCCCTTGCTGCAACTCTTGGTCCGAGTCAGCCTAACCCCAACCTCAACTT- 1161 Query 1174 GG-GGCTGTTGGATTGTCTTCAGGGTCTACTGGTGGGCTTGAGGGTCCCGACCGCATTTT 1232 || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1162 GGCGGCTGTTGGATTGTCTTCGGGGTCTACTGGTGGGCTTGAGGGTCCCGATCGCATTTT 1221 Query 1233 TGTGGGCGGACTTCCCTATTACTTCACAGAGGTACAGATCAGGGAGCTCTTGGAGTCTTT 1292 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1222 TGTGGGCGGGCTTCCCTATTACTTCACAGAGGTTCAAATCAGGGAGCTCTTGGAGTCTTT 1281 Query 1293 TGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGGAGACTGGAAATTCGAAGGGATA 1352 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1282 TGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGGAAACTGGAAATTCGAAGGGATA 1341 Query 1353 TGCATTCTGTGTTTACCAAGATCCGTCAGTAACAGATATTGCATGTGCCGCTCTAAACGG 1412 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1342 TGCATTCTGTGTTTACCAAGATCCGTCAGTAACTGATATTGCATGTGCCGCTCTAAACGG 1401 Query 1413 GATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTGCAATCCAGGGTGCAATTCAACC 1472 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1402 GATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTGCAATCCAGGGTGTGATTCAACC 1461 Query 1473 TAAACCCGAGCAAGAAGAAGTCTTACTTTATGCCCAACAACAGATTGCTTTGCAGAGGCT 1532 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1462 TAAACCCGAGCAAGAAGAAGTCTTACTTCATGCCCAACAACAGATTGCTTTGCAGAGGCT 1521 Query 1533 TATGTTCCAACCAGGAGGTACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGC 1592 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1522 TATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGC 1581 Query 1593 TGATGATCTTAGAGACGATGAAGAATATGCAGAGATAATGGAGGACATGCGACAAGAAGG 1652 ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 1582 TGATGATGTTAGAGACGATGAAGAATATGCAGACATAATGGAGGACATGAGACAAGAAGG 1641 Query 1653 TGGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGACCC 1712 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 1642 TGGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCAAGGCCCAATCCAGATCATGATCC 1701 Query 1713 AACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGC 1772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1702 AACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGC 1761 Query 1773 CAGATCGGGGATGAATGGAAGAAAATTTGGAGGAAACCAAGTAGTGGCTGTGTATTACCC 1832 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1762 CAGATCGGGGATGAACGGAAGAAAATTTGGAGGAAACCAAGTGGTGGCTGTGTATTACCC 1821 Query 1833 CGAAGACAAGTATGCCCAAGGCGACTACGAAGACTGAGCTATCTATCGT-CTTCTTCTTA 1891 |||||||||||| ||||||||||||||||||||||||| ||||||| || ||||||| Sbjct 1822 TGAAGACAAGTATTTGCAAGGCGACTACGAAGACTGAGCTAGCTATCGTTCT-CTTCTTA 1880 Query 1892 AGCTTTTAGTTTGGATCTCTTAGCAACAAGTTTGGTTCttttt-t-atttttaagttttt 1949 |||||| ||| |||| ||||||||||||||||||| ||||||| | | ||||| ||||| Sbjct 1881 AGCTTT-AGTGTGGACCTCTTAGCAACAAGTTTGGATCTTTTTGTTAATTTTA--TTTTT 1937 Query 1950 tACATGTTTAGTTCTCTCTCTACTAAATGGAGAAATTTG-T-CT--AGAATCTGACTGCA 2005 |||||||| | | || |||||||||||||||| ||||| | || |||||||||||||| Sbjct 1938 TACATGTT-A-TGGTCACTCTACTAAATGGAGATATTTGGTTCTCTAGAATCTGACTGCA 1995 Query 2006 ATAGTACTT-GTCCAGGCACAATCAATTAAGGTGTGTGTTGGTAATAG 2052 |||||| || |||||||||||||||| |||||||||||||||||| Sbjct 1996 ATAGTAGTTTGTCCAGGCACAATCAA----GGTGTGTGTTGGTAATAG 2039 > Ahg338287 jgi|Araly1|338287|fgenesh1_pg.C_scaffold_2000386 Length=702 Score = 774 bits (419), Expect = 0.0 Identities = 584/663 (88%), Gaps = 14/663 (2%) Strand=Plus/Plus Query 1211 TTGAGGGTCCCGACCGCATTTTTGTGGGCGGACTTCCCTATTACTTCACAGAGGTACAGA 1270 |||| ||||| ||||| |||||||| ||||| |||||| ||||||||||||| | ||| | Sbjct 50 TTGAAGGTCCTGACCGGATTTTTGTTGGCGGGCTTCCCCATTACTTCACAGATGCACAAA 109 Query 1271 TCAGGGAGCTCTTGGAGTCTTTTGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGG 1330 |||||||| | ||||||| | |||| || ||| |||||||||||||| | |||||||| Sbjct 110 TCAGGGAGATTTTGGAGTGTCTTGGTCCTCTACGAGGTTTCAACTTGCTTAAAGACAGAC 169 Query 1331 AGACTGGAAATTCGAAGGGATATGCATTCTGTGTTTACCAAGATCCGTCAGTAACAGATA 1390 | |||||| | || ||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 170 AAACTGGAGACTCCAAGGGATATGCCTTCTGTGTTTACCAAGATCCTTCAGTAACAGATA 229 Query 1391 TTGCATGTGCCGCTCTAAACGGGATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTG 1450 |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| Sbjct 230 TTGCATGTGCCGCTCTTAACGGGATTAAGATTGGTGATAAGACACTTGCAGTTAGGCGTG 289 Query 1451 CAATCCAGGGTGCAATTCAACCTAAACCCGAGCAAGAAGAAGTCTTACTTTA--T-GCCC 1507 |||| || ||| | |||||||| ||||||||||||||||||||||||| | | || | Sbjct 290 CAATGCAAGGTACGATTCAACCGAAACCCGAGCAAGAAGAAGTCTTACAACAGATTGCTC 349 Query 1508 AACAACAGATTGCTTTGCAGAGGCTTATGTTCCAACCAGGAGGTACTCCCACCAAGATTG 1567 ||||||||||||| |||||||| |||||||| |||||||||||| |||||| ||||||| Sbjct 350 AACAACAGATTGCCTTGCAGAGACTTATGTTAGAACCAGGAGGTATTCCCACTAAGATTG 409 Query 1568 TCTGTTTGACTCAAGTGGTTACAGCTGATGATCTTAGAGACGATGAAGAATATGCAGAGA 1627 | ||||||| |||| |||||||| |||| |||||||| || |||||||||||||||| | Sbjct 410 TTTGTTTGAGTCAATTGGTTACAATTGATAATCTTAGAAACTATGAAGAATATGCAGACA 469 Query 1628 TAATGGAGGACATGCGACAAGAAGGTGGAAAATTCGGTAACTTAGTGAATGTTGTGATTC 1687 ||||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 TAATG-----C--G--ACAAGAAGGTGGAAAATTCGGTAACTTAGTGAATGTTGTGATTC 520 Query 1688 CGAGGCCTAATCCAGATCATGACCCAACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATG 1747 ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| Sbjct 521 CGAGGCCTAATCCAGATCATGGTCCAACACCAGGAGTTGGAAATGTTTTCTTAGAGTATG 580 Query 1748 CGGATGTGGATGGCTCATCAAAGGCCAGATCGGG-GATGAATGGAAGAAAATTTGGAGGA 1806 ||||||| ||||||||||||||||||||| | || |||||||||||||| | |||||||| Sbjct 581 CGGATGTCGATGGCTCATCAAAGGCCAGA-CTGGAGATGAATGGAAGAATAGTTGGAGGA 639 Query 1807 AACCAAGTAGTGGCTGTGTATTACCCCGAAGACAAGTATGCCCAAGGCGACTACGAAGAC 1866 ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 640 TACCAAGTGGTGGCTGTGTATTACCCCGAGGACAAGTATGCTCAAGGCGACTACGAAGAC 699 Query 1867 TGA 1869 ||| Sbjct 700 TGA 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78427814455 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5