BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60900.1
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475241 jgi|Araly1|475241|fgenesh2_kg.2__371__AT1G60900.1 2758 0.0
Ahg338287 jgi|Araly1|338287|fgenesh1_pg.C_scaffold_2000386 774 0.0
> Ahg475241 jgi|Araly1|475241|fgenesh2_kg.2__371__AT1G60900.1
Length=2039
Score = 2758 bits (1493), Expect = 0.0
Identities = 1905/2088 (91%), Gaps = 91/2088 (4%)
Strand=Plus/Plus
Query 7 TTTAATTCATCCTCCATT-AGAATCCCTAGGGTTTTCTTCCATACACAATCAGACTCAAC 65
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTTAATTCATCCTCCATTGAAAATCCCTAGGGTTTTCTTCCATACACAATCAGACT---C 57
Query 66 GATAAGTACCAATCGGAGAAGAGA-TCACAAGTGGATGATGAGTTACGAAGGCAACGGAG 124
| ||||| ||||||||||| || | || ||||||||| ||||||||| |||||||
Sbjct 58 -----G-ACCAACCGGAGAAGAGATTC-CGAGAGGATGATGACTTACGAAGGTAACGGAG 110
Query 125 ATGGTGTCGCTATCTCCACCGAAAACCACAACGAGAACTACATATCTCTAGAGAGCTCGC 184
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 111 ATGGCGTCGCTATCTCCACCGAAAACCACAGCGAAAACTACATATCTCTAGAGAGCTCGC 170
Query 185 CTTTTCATGAAGACTCC-AAGTCTCGAGAAT-CTCATG-A-TCT-TAA--AAAG-GATTC 236
|||||| || | || || |||| || ||||| | || || | || ||
Sbjct 171 CTTTTC----AGTC-CCTTGGTGGCGAGGATGGTCATGAAGACTCCAAGTCTCGAGAATC 225
Query 237 TTCGAAAATCAGTGAGAAA-GA--CAAT-GAAAATGGACGTGATAAAGACGGAAACAAAG 292
|| | ||| ||| ||| || | | |||||| | |||| |||||| || || ||
Sbjct 226 -TC-ATGATC-TTGA-AAAGGATTC-TTCGAAAAT-CA-GTGAGAAAGACAGAGAC-AA- 276
Query 293 ATCGTGATCGTgagaaggatcgtgatagggagaagagcagagacagagatagggagaaaa 352
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 A----GATCGTGAGAAGGATCGTGATAGGGAGAAGAGCAGAGACAGAGATAGGGAGAAAA 332
Query 353 gcagagatagagatagggatagggagagaagtaaggataggCAACGAGACCGTCATCATA 412
|| |||||||||||||||||||||||||| |||||| ||||||| || |||||||
Sbjct 333 GC------AGAGATAGGGATAGGGAGAGAAGTAAAGATAGGGAACGAGATCGCCATCATA 386
Query 413 GAGATCGTCATAGGGACCGTAGCAGAGAACGTAGT-------GAGAA----A-AGAGATG 460
||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 387 GAGATCGTCATAGGGACCGTAGCAGAGAACGTAGTGAGAAAAGAGAACGTGAGAGAGATG 446
Query 461 ATTTGGATGATGATCATCATC-GCAGAAGTCGAGACCGTGATAGGAGGAGGTCTCGCGAT 519
||||||||||||||||||||| || || || ||||| ||||||||||||||||||
Sbjct 447 ATTTGGATGATGATCATCATCATCA-CAG--AAG-TCGTGACAGGAGGAGGTCTCGCGAT 502
Query 520 CGAGACAGAGAGGTGAGACACAGGCGACGGTCACGCTCTCGGTCAAGGAGCCGCTCTGAA 579
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CGAGACAGAGAGGTCAGACACAGGCGACGGTCACGCTCTCGGTCAAGGAGCCGCTCTGAA 562
Query 580 CGTAGGTCAAGGTCAGAACATAGACATAAGTCTGAACATAG---A---TCACGCTCACGG 633
|| |||||||||||||||||||| ||||||||||||||||| | |||||||||| |
Sbjct 563 CGCAGGTCAAGGTCAGAACATAGGCATAAGTCTGAACATAGATCACGTTCACGCTCACAG 622
Query 634 TCGCGATCAAGGTCAAAGAGCAAGAGGAGAAGTGGATTTGATATGGCGCCTCCTGATATG 693
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TCGCGATCAAGGTCAAAAAGCAAGAGGAGAAGTGGATTTGATATGGCGCCTCCTGATATG 682
Query 694 TTAGCTGCTACTGCTGTTGCTGCAGCAGGCCAGGTTCCTAGTGTGCCAACTACTGCTACT 753
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 683 TTAGCTGCTACTGCTGTTGCTGCGGCAGGCCAGGTTCCTAGTGTGCCAACTACTGCTACT 742
Query 754 ATTCCAGGGATGTTCTCAAACATGTTTCCAATGGTCCCTGGTCAGCAACTAGGTGCGCTT 813
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 743 ATTCCAGGGATGTTCCCAAACATGTTCCCAATGGTCCCTGGTCAGCAACTGGGTGCGCTT 802
Query 814 CCTGTACTGCCAGTTCAGGCAATGACTCAACAGGCAACTAGGCATGCTCGGCGAGTCTAT 873
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 803 CCTGTACTGCCAGTTCAGGCAATGACTCAGCAGGCAACTAGGCATGCTCGGCGGGTCTAT 862
Query 874 GTTGGTGGCCTTCCACCAACTGCTAATGAACAGTCGGTGTCAACGTTCTTTAGCCAAGTG 933
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 863 GTTGGTGGCCTTCCACCAACTGCAAATGAACAGTCGGTGGCAACGTTCTTTAGCCAAGTG 922
Query 934 ATGTCGGCCATTGGGGGAAACACTGCTGGGCCAGGTGATGCGGTGGTCAATGTTTATATA 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 ATGTCGGCCATTGGGGGAAACACTGCTGGGCCAGGTGATGCGGTGGTCAATGTTTATATA 982
Query 994 AACCACGAAAAGAAGTTTGCTTTTGTAGAGATGAGATCTGTTGAGGAGGCTAGTAACGCA 1053
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 AACCACGAAAAGAAGTTCGCTTTTGTAGAGATGAGATCTGTTGAGGAGGCTAGTAACGCA 1042
Query 1054 ATGGCATTAGACGGCATTATATTAGAGGGAGTTCCTGTAAAGGTGAGGAGGCCAACTGAC 1113
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1043 ATGGCATTAGATGGCATTATATTAGAGGGAGTTCCTGTAAAGGTAAGGAGGCCAACTGAC 1102
Query 1114 TATAACCCGTCTCTTGCTGCAACTCTTGGTCCGAGCCAGCCTAATCCCAACCTCAACTTA 1173
||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1103 TATAACCCGTCCCTTGCTGCAACTCTTGGTCCGAGTCAGCCTAACCCCAACCTCAACTT- 1161
Query 1174 GG-GGCTGTTGGATTGTCTTCAGGGTCTACTGGTGGGCTTGAGGGTCCCGACCGCATTTT 1232
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1162 GGCGGCTGTTGGATTGTCTTCGGGGTCTACTGGTGGGCTTGAGGGTCCCGATCGCATTTT 1221
Query 1233 TGTGGGCGGACTTCCCTATTACTTCACAGAGGTACAGATCAGGGAGCTCTTGGAGTCTTT 1292
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1222 TGTGGGCGGGCTTCCCTATTACTTCACAGAGGTTCAAATCAGGGAGCTCTTGGAGTCTTT 1281
Query 1293 TGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGGAGACTGGAAATTCGAAGGGATA 1352
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1282 TGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGGAAACTGGAAATTCGAAGGGATA 1341
Query 1353 TGCATTCTGTGTTTACCAAGATCCGTCAGTAACAGATATTGCATGTGCCGCTCTAAACGG 1412
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1342 TGCATTCTGTGTTTACCAAGATCCGTCAGTAACTGATATTGCATGTGCCGCTCTAAACGG 1401
Query 1413 GATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTGCAATCCAGGGTGCAATTCAACC 1472
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1402 GATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTGCAATCCAGGGTGTGATTCAACC 1461
Query 1473 TAAACCCGAGCAAGAAGAAGTCTTACTTTATGCCCAACAACAGATTGCTTTGCAGAGGCT 1532
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1462 TAAACCCGAGCAAGAAGAAGTCTTACTTCATGCCCAACAACAGATTGCTTTGCAGAGGCT 1521
Query 1533 TATGTTCCAACCAGGAGGTACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGC 1592
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TATGTTACAACCAGGAGGCACTCCCACCAAGATTGTCTGTTTGACTCAAGTGGTTACAGC 1581
Query 1593 TGATGATCTTAGAGACGATGAAGAATATGCAGAGATAATGGAGGACATGCGACAAGAAGG 1652
||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1582 TGATGATGTTAGAGACGATGAAGAATATGCAGACATAATGGAGGACATGAGACAAGAAGG 1641
Query 1653 TGGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCGAGGCCTAATCCAGATCATGACCC 1712
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1642 TGGAAAATTCGGTAACTTAGTGAATGTTGTGATTCCAAGGCCCAATCCAGATCATGATCC 1701
Query 1713 AACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGC 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 AACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATGCGGATGTGGATGGCTCATCAAAGGC 1761
Query 1773 CAGATCGGGGATGAATGGAAGAAAATTTGGAGGAAACCAAGTAGTGGCTGTGTATTACCC 1832
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1762 CAGATCGGGGATGAACGGAAGAAAATTTGGAGGAAACCAAGTGGTGGCTGTGTATTACCC 1821
Query 1833 CGAAGACAAGTATGCCCAAGGCGACTACGAAGACTGAGCTATCTATCGT-CTTCTTCTTA 1891
|||||||||||| ||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 1822 TGAAGACAAGTATTTGCAAGGCGACTACGAAGACTGAGCTAGCTATCGTTCT-CTTCTTA 1880
Query 1892 AGCTTTTAGTTTGGATCTCTTAGCAACAAGTTTGGTTCttttt-t-atttttaagttttt 1949
|||||| ||| |||| ||||||||||||||||||| ||||||| | | ||||| |||||
Sbjct 1881 AGCTTT-AGTGTGGACCTCTTAGCAACAAGTTTGGATCTTTTTGTTAATTTTA--TTTTT 1937
Query 1950 tACATGTTTAGTTCTCTCTCTACTAAATGGAGAAATTTG-T-CT--AGAATCTGACTGCA 2005
|||||||| | | || |||||||||||||||| ||||| | || ||||||||||||||
Sbjct 1938 TACATGTT-A-TGGTCACTCTACTAAATGGAGATATTTGGTTCTCTAGAATCTGACTGCA 1995
Query 2006 ATAGTACTT-GTCCAGGCACAATCAATTAAGGTGTGTGTTGGTAATAG 2052
|||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 1996 ATAGTAGTTTGTCCAGGCACAATCAA----GGTGTGTGTTGGTAATAG 2039
> Ahg338287 jgi|Araly1|338287|fgenesh1_pg.C_scaffold_2000386
Length=702
Score = 774 bits (419), Expect = 0.0
Identities = 584/663 (88%), Gaps = 14/663 (2%)
Strand=Plus/Plus
Query 1211 TTGAGGGTCCCGACCGCATTTTTGTGGGCGGACTTCCCTATTACTTCACAGAGGTACAGA 1270
|||| ||||| ||||| |||||||| ||||| |||||| ||||||||||||| | ||| |
Sbjct 50 TTGAAGGTCCTGACCGGATTTTTGTTGGCGGGCTTCCCCATTACTTCACAGATGCACAAA 109
Query 1271 TCAGGGAGCTCTTGGAGTCTTTTGGGCCCCTAAGAGGTTTCAACTTGGTCAAAGACAGGG 1330
|||||||| | ||||||| | |||| || ||| |||||||||||||| | ||||||||
Sbjct 110 TCAGGGAGATTTTGGAGTGTCTTGGTCCTCTACGAGGTTTCAACTTGCTTAAAGACAGAC 169
Query 1331 AGACTGGAAATTCGAAGGGATATGCATTCTGTGTTTACCAAGATCCGTCAGTAACAGATA 1390
| |||||| | || ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 170 AAACTGGAGACTCCAAGGGATATGCCTTCTGTGTTTACCAAGATCCTTCAGTAACAGATA 229
Query 1391 TTGCATGTGCCGCTCTAAACGGGATTAAGATGGGTGATAAGACACTTACAGTTAGGCGTG 1450
|||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 230 TTGCATGTGCCGCTCTTAACGGGATTAAGATTGGTGATAAGACACTTGCAGTTAGGCGTG 289
Query 1451 CAATCCAGGGTGCAATTCAACCTAAACCCGAGCAAGAAGAAGTCTTACTTTA--T-GCCC 1507
|||| || ||| | |||||||| ||||||||||||||||||||||||| | | || |
Sbjct 290 CAATGCAAGGTACGATTCAACCGAAACCCGAGCAAGAAGAAGTCTTACAACAGATTGCTC 349
Query 1508 AACAACAGATTGCTTTGCAGAGGCTTATGTTCCAACCAGGAGGTACTCCCACCAAGATTG 1567
||||||||||||| |||||||| |||||||| |||||||||||| |||||| |||||||
Sbjct 350 AACAACAGATTGCCTTGCAGAGACTTATGTTAGAACCAGGAGGTATTCCCACTAAGATTG 409
Query 1568 TCTGTTTGACTCAAGTGGTTACAGCTGATGATCTTAGAGACGATGAAGAATATGCAGAGA 1627
| ||||||| |||| |||||||| |||| |||||||| || |||||||||||||||| |
Sbjct 410 TTTGTTTGAGTCAATTGGTTACAATTGATAATCTTAGAAACTATGAAGAATATGCAGACA 469
Query 1628 TAATGGAGGACATGCGACAAGAAGGTGGAAAATTCGGTAACTTAGTGAATGTTGTGATTC 1687
||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TAATG-----C--G--ACAAGAAGGTGGAAAATTCGGTAACTTAGTGAATGTTGTGATTC 520
Query 1688 CGAGGCCTAATCCAGATCATGACCCAACACCAGGAGTTGGGAAGGTTTTCTTAGAGTATG 1747
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 521 CGAGGCCTAATCCAGATCATGGTCCAACACCAGGAGTTGGAAATGTTTTCTTAGAGTATG 580
Query 1748 CGGATGTGGATGGCTCATCAAAGGCCAGATCGGG-GATGAATGGAAGAAAATTTGGAGGA 1806
||||||| ||||||||||||||||||||| | || |||||||||||||| | ||||||||
Sbjct 581 CGGATGTCGATGGCTCATCAAAGGCCAGA-CTGGAGATGAATGGAAGAATAGTTGGAGGA 639
Query 1807 AACCAAGTAGTGGCTGTGTATTACCCCGAAGACAAGTATGCCCAAGGCGACTACGAAGAC 1866
||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 640 TACCAAGTGGTGGCTGTGTATTACCCCGAGGACAAGTATGCTCAAGGCGACTACGAAGAC 699
Query 1867 TGA 1869
|||
Sbjct 700 TGA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78427814455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5