BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60913.1
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924955 jgi|Araly1|924955|scaffold_200516.1 268 9e-72
> Ahg924955 jgi|Araly1|924955|scaffold_200516.1
Length=287
Score = 268 bits (145), Expect = 9e-72
Identities = 217/249 (87%), Gaps = 15/249 (6%)
Strand=Plus/Plus
Query 1 ATGGCTGCACACAAAATGAGTCTTACTAG-TCTTTTC-TTTGTGTCAATAG-TGATTGTA 57
|||||| ||||||||||||||||||| | || |||| ||||| ||||| | ||||| ||
Sbjct 25 ATGGCTACACACAAAATGAGTCTTAC-CGTTC-TTTCTTTTGTTTCAAT-GATGATTATA 81
Query 58 TTATCATTGTTCAGCGGATTCGGAGAAGGAAGATACATA----AAATATAGAGCTATTGC 113
||||||||||||||||||||||||||||||||| | ||| |||||| ||| |||| |
Sbjct 82 TTATCATTGTTCAGCGGATTCGGAGAAGGAAGAAA-ATATTTGAAATATGGAGTTATTAC 140
Query 114 AAAAGATAGAGTTCCAGACTGCAC-TCAAGA-TCCCAAAAATTGTGTCAGAGTTCCAGTC 171
|||||| ||| ||||| ||||| | ||| || |||| ||||||||||||||||||||| |
Sbjct 141 AAAAGACAGAATTCCAAACTGC-CGTCA-GAATCCCGAAAATTGTGTCAGAGTTCCAGCC 198
Query 172 AACCAGTACCATCTTCCTCCTGGTTGTCAAAACACTACACATTGTTATCGTGAAAAGTAT 231
||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 199 AACCAATACCATCTTCCTCCTGGTTGTAAAAATTCTACACATTGTTATCGTGAAAAGTAT 258
Query 232 CATATTTAA 240
|||||||||
Sbjct 259 CATATTTAA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8286852637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5