BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60920.1
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475240 jgi|Araly1|475240|fgenesh2_kg.2__370__AT1G60920.1 785 0.0
Ahg475244 jgi|Araly1|475244|fgenesh2_kg.2__374__AT1G60880.1 488 2e-137
> Ahg475240 jgi|Araly1|475240|fgenesh2_kg.2__370__AT1G60920.1
Length=569
Score = 785 bits (425), Expect = 0.0
Identities = 529/578 (92%), Gaps = 12/578 (2%)
Strand=Plus/Plus
Query 1 ATGGGAGGCACAAAAAGAAAGATAGAGATGAAGAGAATCGAAGATAAGAACGTGAGAGCA 60
||||||||||||||| ||||||||||||| ||| |||||| | |||||| ||||| ||
Sbjct 1 ATGGGAGGCACAAAACGAAAGATAGAGATTAAGCCTATCGAAAACAAGAACATGAGATCA 60
Query 61 GTTGCTTTCACAAAACGCA-AAAGCGGACTCTTCCACAAAGCTTCAGAGCTCTGTCTCCT 119
|||||||| |||||||||| ||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 61 GTTGCTTTTACAAAACGCAGAAA-CGGTCTCTTCCGCAAAGCTTCAGAGCTCTGTCTCCT 119
Query 120 CTCTCCGGGGACTCAAATCGCAATCTTAGCAACTCCTCTTTCTTCCCACTCCCATGCTTC 179
||||||||| |||||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 120 CTCTCCGGGAACTCAAATCGCAATCTTATTAACTCCTCTTTCTTCCAACTCTCATGCTTC 179
Query 180 TTTCTACTCTTTCGGTCATTCCTCTGTCGATCACGTTGTCTCCTCTCTCCTTCACAATCA 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 TTTCTACTCTTTCGGTCATTCCTCCGTCGATCACGTTGTCTCCTCTCTCCTTCACAATCA 239
Query 240 GCATCCATCTCTTCCCACAAACCAAGATAACAGATCAGGGTTAGGGTTTTGGTGGGAAGA 299
|| | | ||||||| ||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 240 GCCT-C--CTCTTCCGACAGACCAAGAGAACAGATCAGGGGTAGGGTTTTGGTGGGAAGA 296
Query 300 CCAAGCCTTTGACAGATTGGAGAACGTCGACGAGTTGAAAGAGGCAG-TCGATGCGGTTT 358
||||||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||
Sbjct 297 CCAAGCCTTTGACAGATTGGAGAACGTTGACGAGTTGAAAGAGGC-GATCGACGCGGTTT 355
Query 359 CGAGGATGTTGAACAATGTGAGGCTACGATTAGATGATGCCGTGAAGAGCAATCAAAGAG 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 CGAGGATGTTGAACAATGTGAGGTTACGATTAGATGATGCCGTGAAGAGCAATCAAAGAG 415
Query 419 ATGGAAGTTTAGTGA-TTCATCAGGAGGATGAGGAGGTTCTTCAGCTTGGCTACAAAGAC 477
||||||||||||||| || |||||||||| | | |||||||||||||| || || |||||
Sbjct 416 ATGGAAGTTTAGTGAATT-ATCAGGAGGA-G-G-AGGTTCTTCAGCTTCGCAACGAAGAC 471
Query 478 ACAAATCAAATTACCAAACTCGAAGGTGAAACTTCCGCTTCTGCAAGTTTGTTAAAGAAC 537
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 472 ACAAATCAAATTACCAAATTCGAAGGTGAAACTTCTGCTTCTGCAAGTTTGTTAAAGAAC 531
Query 538 GTAGTGGATAATCTACACATTGATGATCGTTATTACTG 575
| | ||||||||||||||| |||||| ||| ||||||
Sbjct 532 TTGGAGGATAATCTACACATCGATGATTGTTTTTACTG 569
> Ahg475244 jgi|Araly1|475244|fgenesh2_kg.2__374__AT1G60880.1
Length=558
Score = 488 bits (264), Expect = 2e-137
Identities = 473/572 (83%), Gaps = 22/572 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGGCACAAAAA-GAAAGATAGAGATGAAGAGAATCGAAGA-TAAGAACGTGAGAG 58
|||||||||| ||||| | |||||| |||| || ||||||||| | ||| || |||
Sbjct 1 ATGGGAGGCA-AAAAACGTAAGATAAAGATTAAAAGAATCGAAAACAAAG-TCGCAAGAA 58
Query 59 CAGTTGCTTTCACAAAACGCAAAAG-CGGACTCTTCCACAAAGCTTCAGAGCTCTGTCTC 117
|||||||||||||||||| | | ||| ||||||| |||||||||| |||||||||||
Sbjct 59 TGGTTGCTTTCACAAAACGC-AGGGCCGGTCTCTTCCGCAAAGCTTCACAGCTCTGTCTC 117
Query 118 CTCTCTCCGGGGACTCAAATCGCAATCTTAGCAACTCCTCTTTCTTCCCACTCCCATGCT 177
|||||||| || |||||||||||||||||||| |||||| | ||||| | || ||||||
Sbjct 118 CTCTCTCCCGGCACTCAAATCGCAATCTTAGCGACTCCTATGACTTCCAATTCTCATGCT 177
Query 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGATCA-CGTTGTCTCCTCTCTCCTTCACAA 236
||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| || |
Sbjct 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGAT-AGCGTTGTCTCCTCTCTGCTTTACGA 236
Query 237 TCAGCATCCATCTCTTCCCACAAACCAAGATAACAGATCAGGGTTAGGGTTTTGGTGGGA 296
|||| ||| ||| | || |||||||||| ||||| |||||||||||||||||||||||
Sbjct 237 CCAGCCTCC-TCT-T-CCGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGA 293
Query 297 AGACCAAGCCTTT-GACAG-ATTGGAGAACGTCGACGAGTTGAAAGAGGCAGTCGATGCG 354
|||| || | ||| || | || ||||||||| || ||||| ||||| || |||||||||
Sbjct 294 AGACAAA-CGTTTTGAT-GTATCGGAGAACGTTGAGGAGTTAAAAGATGCGGTCGATGCG 351
Query 355 GTTTCGAGGATGTTGAACAATGTGAGGCTACGATTAGATGATGCCGTGAAGAGCAATCAA 414
||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||
Sbjct 352 GTTTCGAGGATGTTGAACAATGTGAGGTTACGATTAAATGATGCCGTGAAGAACACTCAA 411
Query 415 AGAGATGGAAGTTTAGTGATTCATCAGGAGGATGAGGAGGTTCTTCAGCTTGGCTACAAA 474
||||||||| |||||| ||||| || |||| ||||| |||| |||| || || | ||
Sbjct 412 AGAGATGGATGTTTAGAGATTCTTCCTCAGGAGGAGGAAGTTCATCAGATTCGCAATGAA 471
Query 475 GACACAAAT-CAAATTACCAAACTCGAAGGTGAAACTTCCGCTTCTGCAAGTTTGTTAAA 533
|| ||||| | ||| | || | | ||| |||||||| | |||||||||||| ||| |
Sbjct 472 GAGACAAAGACGAAT--C-AATTT-GTAGGCGAAACTTCTGGTTCTGCAAGTTTCTTAGA 527
Query 534 GAACGTAGT-GGATAATCTACACATTGATGAT 564
||||| || ||||| ||| ||| ||||||||
Sbjct 528 GAACG-AGGAGGATATTCTTCACTTTGATGAT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21061885128
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5