BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G60920.1 Length=576 Score E Sequences producing significant alignments: (Bits) Value Ahg475240 jgi|Araly1|475240|fgenesh2_kg.2__370__AT1G60920.1 785 0.0 Ahg475244 jgi|Araly1|475244|fgenesh2_kg.2__374__AT1G60880.1 488 2e-137 > Ahg475240 jgi|Araly1|475240|fgenesh2_kg.2__370__AT1G60920.1 Length=569 Score = 785 bits (425), Expect = 0.0 Identities = 529/578 (92%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 1 ATGGGAGGCACAAAAAGAAAGATAGAGATGAAGAGAATCGAAGATAAGAACGTGAGAGCA 60 ||||||||||||||| ||||||||||||| ||| |||||| | |||||| ||||| || Sbjct 1 ATGGGAGGCACAAAACGAAAGATAGAGATTAAGCCTATCGAAAACAAGAACATGAGATCA 60 Query 61 GTTGCTTTCACAAAACGCA-AAAGCGGACTCTTCCACAAAGCTTCAGAGCTCTGTCTCCT 119 |||||||| |||||||||| ||| ||| ||||||| |||||||||||||||||||||||| Sbjct 61 GTTGCTTTTACAAAACGCAGAAA-CGGTCTCTTCCGCAAAGCTTCAGAGCTCTGTCTCCT 119 Query 120 CTCTCCGGGGACTCAAATCGCAATCTTAGCAACTCCTCTTTCTTCCCACTCCCATGCTTC 179 ||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||| Sbjct 120 CTCTCCGGGAACTCAAATCGCAATCTTATTAACTCCTCTTTCTTCCAACTCTCATGCTTC 179 Query 180 TTTCTACTCTTTCGGTCATTCCTCTGTCGATCACGTTGTCTCCTCTCTCCTTCACAATCA 239 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 180 TTTCTACTCTTTCGGTCATTCCTCCGTCGATCACGTTGTCTCCTCTCTCCTTCACAATCA 239 Query 240 GCATCCATCTCTTCCCACAAACCAAGATAACAGATCAGGGTTAGGGTTTTGGTGGGAAGA 299 || | | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||||| Sbjct 240 GCCT-C--CTCTTCCGACAGACCAAGAGAACAGATCAGGGGTAGGGTTTTGGTGGGAAGA 296 Query 300 CCAAGCCTTTGACAGATTGGAGAACGTCGACGAGTTGAAAGAGGCAG-TCGATGCGGTTT 358 ||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||| Sbjct 297 CCAAGCCTTTGACAGATTGGAGAACGTTGACGAGTTGAAAGAGGC-GATCGACGCGGTTT 355 Query 359 CGAGGATGTTGAACAATGTGAGGCTACGATTAGATGATGCCGTGAAGAGCAATCAAAGAG 418 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 356 CGAGGATGTTGAACAATGTGAGGTTACGATTAGATGATGCCGTGAAGAGCAATCAAAGAG 415 Query 419 ATGGAAGTTTAGTGA-TTCATCAGGAGGATGAGGAGGTTCTTCAGCTTGGCTACAAAGAC 477 ||||||||||||||| || |||||||||| | | |||||||||||||| || || ||||| Sbjct 416 ATGGAAGTTTAGTGAATT-ATCAGGAGGA-G-G-AGGTTCTTCAGCTTCGCAACGAAGAC 471 Query 478 ACAAATCAAATTACCAAACTCGAAGGTGAAACTTCCGCTTCTGCAAGTTTGTTAAAGAAC 537 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 472 ACAAATCAAATTACCAAATTCGAAGGTGAAACTTCTGCTTCTGCAAGTTTGTTAAAGAAC 531 Query 538 GTAGTGGATAATCTACACATTGATGATCGTTATTACTG 575 | | ||||||||||||||| |||||| ||| |||||| Sbjct 532 TTGGAGGATAATCTACACATCGATGATTGTTTTTACTG 569 > Ahg475244 jgi|Araly1|475244|fgenesh2_kg.2__374__AT1G60880.1 Length=558 Score = 488 bits (264), Expect = 2e-137 Identities = 473/572 (83%), Gaps = 22/572 (4%) Strand=Plus/Plus Query 1 ATGGGAGGCACAAAAA-GAAAGATAGAGATGAAGAGAATCGAAGA-TAAGAACGTGAGAG 58 |||||||||| ||||| | |||||| |||| || ||||||||| | ||| || ||| Sbjct 1 ATGGGAGGCA-AAAAACGTAAGATAAAGATTAAAAGAATCGAAAACAAAG-TCGCAAGAA 58 Query 59 CAGTTGCTTTCACAAAACGCAAAAG-CGGACTCTTCCACAAAGCTTCAGAGCTCTGTCTC 117 |||||||||||||||||| | | ||| ||||||| |||||||||| ||||||||||| Sbjct 59 TGGTTGCTTTCACAAAACGC-AGGGCCGGTCTCTTCCGCAAAGCTTCACAGCTCTGTCTC 117 Query 118 CTCTCTCCGGGGACTCAAATCGCAATCTTAGCAACTCCTCTTTCTTCCCACTCCCATGCT 177 |||||||| || |||||||||||||||||||| |||||| | ||||| | || |||||| Sbjct 118 CTCTCTCCCGGCACTCAAATCGCAATCTTAGCGACTCCTATGACTTCCAATTCTCATGCT 177 Query 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGATCA-CGTTGTCTCCTCTCTCCTTCACAA 236 ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| || | Sbjct 178 TCTTTCTACTCTTTCGGTCATTCCTCTGTCGAT-AGCGTTGTCTCCTCTCTGCTTTACGA 236 Query 237 TCAGCATCCATCTCTTCCCACAAACCAAGATAACAGATCAGGGTTAGGGTTTTGGTGGGA 296 |||| ||| ||| | || |||||||||| ||||| ||||||||||||||||||||||| Sbjct 237 CCAGCCTCC-TCT-T-CCGGCAAACCAAGACAACAGGTCAGGGTTAGGGTTTTGGTGGGA 293 Query 297 AGACCAAGCCTTT-GACAG-ATTGGAGAACGTCGACGAGTTGAAAGAGGCAGTCGATGCG 354 |||| || | ||| || | || ||||||||| || ||||| ||||| || ||||||||| Sbjct 294 AGACAAA-CGTTTTGAT-GTATCGGAGAACGTTGAGGAGTTAAAAGATGCGGTCGATGCG 351 Query 355 GTTTCGAGGATGTTGAACAATGTGAGGCTACGATTAGATGATGCCGTGAAGAGCAATCAA 414 ||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||| Sbjct 352 GTTTCGAGGATGTTGAACAATGTGAGGTTACGATTAAATGATGCCGTGAAGAACACTCAA 411 Query 415 AGAGATGGAAGTTTAGTGATTCATCAGGAGGATGAGGAGGTTCTTCAGCTTGGCTACAAA 474 ||||||||| |||||| ||||| || |||| ||||| |||| |||| || || | || Sbjct 412 AGAGATGGATGTTTAGAGATTCTTCCTCAGGAGGAGGAAGTTCATCAGATTCGCAATGAA 471 Query 475 GACACAAAT-CAAATTACCAAACTCGAAGGTGAAACTTCCGCTTCTGCAAGTTTGTTAAA 533 || ||||| | ||| | || | | ||| |||||||| | |||||||||||| ||| | Sbjct 472 GAGACAAAGACGAAT--C-AATTT-GTAGGCGAAACTTCTGGTTCTGCAAGTTTCTTAGA 527 Query 534 GAACGTAGT-GGATAATCTACACATTGATGAT 564 ||||| || ||||| ||| ||| |||||||| Sbjct 528 GAACG-AGGAGGATATTCTTCACTTTGATGAT 558 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21061885128 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5