BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60930.1
Length=3877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907367 jgi|Araly1|907367|Al_scaffold_0002_448 5288 0.0
Ahg471231 jgi|Araly1|471231|fgenesh2_kg.1__1185__AT1G10930.1 2182 0.0
Ahg924952 jgi|Araly1|924952|scaffold_200513.1 228 3e-58
> Ahg907367 jgi|Araly1|907367|Al_scaffold_0002_448
Length=3519
Score = 5288 bits (2863), Expect = 0.0
Identities = 3233/3407 (95%), Gaps = 44/3407 (1%)
Strand=Plus/Plus
Query 256 TGGGAGTCATCTCCATGAAGTTAATAATTCCAGAAGTCACTTTCCTCAAACAAATTGGTT 315
|||||||||||||| |||||| ||||| |||||| ||||||||| ||||||||||||||
Sbjct 126 TGGGAGTCATCTCCCTGAAGTCAATAAATCCAGAGGTCACTTTCTTCAAACAAATTGGTC 185
Query 316 GAAAGTTGCCAAGGCGTTTGAGTGTATACCATCCTTAAATAAGTTTATGGGCTCCAATTT 375
|||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 186 GAAACATGCCAAGGCTTTTGAGTGTATACCATCCTTGAATAAGTTTATGGGCTCCAATTT 245
Query 376 CCTTTACTCTCTAGAAAGTCAAAAGCTGGGAAGAGATAGAGAAATGGCTGCAAGGTCAAT 435
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 246 CCTTTACTCTCTAGAAAGTCAAAAGCTGGCAAGAGATAGAGAAATGGGTGCAAGGTCTAT 305
Query 436 TGAAAACATCGCTCCTGTAACTGTACAAACTTTGGCACGACCACAAATTGAGAAGGCTTG 495
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||
Sbjct 306 TGAAAACATCGCTCCTGTAACTGTGCAAACTTTGGCACGACCAGAAATTGAAAAGGCGTG 365
Query 496 GTGTACTCTTATAAATCTATCAATAAATAATACCTACCTGAGACCTGGCATTACTCCTGC 555
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 366 GTGTACTCTTATAAATCTCTCAATAAATAATACTTACCTGAGACCTGGCATTACTCCTGC 425
Query 556 AATTGATAATGACAGCACTAG-TCGTACATCTTCTACGAAAGGATCCACTTTTAAAGTTA 614
||||||| ||| ||||||| | |||| |||| ||||||||| |||||||| |||||||||
Sbjct 426 AATTGATGATGGCAGCACT-GATCGTTCATCATCTACGAAAAGATCCACTGTTAAAGTTA 484
Query 615 CATCCAATGCTGATGGATCTTTCTGCGCACACAATCATCCAGAGCATAGTCAAAGGAGTG 674
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 485 CATCCAGTGCTGATGGATCTTTCTACGCACACAATCATCCAGAGCATAGTCAAAGGAGTT 544
Query 675 TAAGAGGCACTGCAAAATCAATTGACAGTTTCTCCTCCTCTTCCGTAGGTGATAATAAAA 734
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 545 TAAGAGGCACTGCAAAATCATTTGACAGTTTCTCATCCTCTTCCGTAGGTGATAATAACA 604
Query 735 TAATTATTGACAAGGTTCCACGGGTCAACT-ATGAGGTTAGAGATTCAGTAAC----TG- 788
||| ||||| |||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 605 TAACTATTGGCAAGGTTCCACGGGTCAA-TGATGAGGTTAGAGATTCAGTAACGGGTTGT 663
Query 789 ---T-TACAAATGGTATGGAGATGCCACCAATCAAAAATTCTGCACAACTAGCCAGACCG 844
| |||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
Sbjct 664 AAATATACAAATGGTATGGAGATGCCACCAATCAAAAATTCCGCACACCTAGTCAGACTG 723
Query 845 GTGGAGCCTAGGGAAGTTAGTCTTGGTGAGATTGATTATGATGACATAATGGAGATTATT 904
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GTGGAGCCTAGGGAAGCTAGTCTTGGTGAGATTGATTATGATGACATAATGGAGATTATT 783
Query 905 GACGTAGACCAGATTGCGATGGAACACTGCCCTTCAACGTGTACGAAGCAACCATCAGTA 964
|| ||||| ||||||| |||||| ||||||||||||| |||| | |||||||||||||||
Sbjct 784 GAGGTAGATCAGATTGTGATGGACCACTGCCCTTCAAGGTGTCCCAAGCAACCATCAGTA 843
Query 965 TCTAAGTTTGTGGATATATTTACTTCCAGAAGAGAAGAAGAGCAAGGTTTGCCTCCTGAA 1024
|||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 844 TCTAAGTTTGTGGATACATTTGCTTCCAGAAGAGAAGAAGAGCAAGGTTTGTTTCCTGAA 903
Query 1025 ATATGTTCCAACTGTAGTCATGGAATAAAGCTAGGGCTTTGTCCTGAAGCTTCTACCCAT 1084
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTATGTTCCAACTGTAGTCATGGAATAAAGCTAGGGCTTTGTCCTGAAGCTTCTACCCAT 963
Query 1085 GTGGAACAAATGAAGGATACGCTGCTTGCAATATCAAATGAAATCCTCGACAATACTTAT 1144
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 964 GTGGAACAAATGAAGGATACGCTGCTTGCAATATCAAATGAATTCCTCGACAATACTTAT 1023
Query 1145 GACCTGGGCCCTGATCATGTTGAACAGCTTCATCAAAAGAGATTACTGTTGAAAAAGCAA 1204
||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1024 GACCTGGGCCCCGATCATGTTGAACAGCTTCGTCAAAAGAGGTTACTGTTGAAAAAGCAA 1083
Query 1205 ATCCAGCAGCTCGAGATCCTTATCCATAATAAAGAAAGGAAAAAATCTCAGTGTTTGGTA 1264
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1084 ATCCAGCAGCTCGAGATCCTTATCCAAAATAAAGAAAGGAAAAAATCTGAGTGTTTGGTA 1143
Query 1265 TCTATACCTTCTCATAATACTCAGTATGAAACACCTCAAACAACAAATCTTGAGGTGGTT 1324
|||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1144 TCTACACCTTCTCATAATATTCAGTATGAAACACCTCAAACAACAAATCATGTGGTGGTT 1203
Query 1325 TATGGGCAGACAGATTCT-C---CAACTCA-----T-G--TA---AAAG--A-GCAAGGC 1366
||| ||||||||||||| | ||| ||| | | || || | | |||||
Sbjct 1204 TATACGCAGACAGATTCTCCTGACAAATCATGTGGTGGTTTATGCCCAGCAACGGAAGGC 1263
Query 1367 AGATGTGTAACTGATAACTGGAATATGCCAAGAGACTATTTAGTTTCTAAAGAGAGGTAT 1426
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AGATATGTAACTGATAACTGGAATATGCCAAGAGACTATTTAGTTTCTAAAGAGAGGTAT 1323
Query 1427 GATATTTCATCTGGTTCTGAAGAGAGGGAACAATCTGTTTCCGAGGTTATAGATGTCACT 1486
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GATATTTCATCTGGTTCTGTAGAGAGGGAACAATCTGTTTCCGAGGTTATAGATGTCACT 1383
Query 1487 GATACCGAGAGTTCAAATGACAAAAAGTGGACCAGTAGTGATTTTCCTTGGACGAAAAAT 1546
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1384 GATACCGAGAGTTCAAATGACAAAAAGTGGGCCAGTCGTGATTTTCCTTGGACGAAAAAT 1443
Query 1547 CTGGAGGTCTATAACAAATTAGTGTTTGGAAACCACTCATTTCGACCCAACCAAAGAGAG 1606
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1444 CTGGAGGTCTATAACAAAATAGTGTTTGGAAACCACTCATTTCGACCAAACCAAAGAGAG 1503
Query 1607 ATCATTAATGCTACAATGAGTGGTTGTGATGTTTTTGTTTTGATGCCAACCGGAGGGGGG 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATCATTAATGCTACAATGAGTGGTTGTGATGTTTTTGTTTTGATGCCAACCGGAGGGGGG 1563
Query 1667 AAAAGCTTAACATATCAGCTCCCTGCTCTACTCTGTGCAGGAATAACATTAGTCATTTCT 1726
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 AAAAGCTTGACATATCAGCTCCCTGCTCTACTCTGTGCAGGAATAACATTAGTCATTTCT 1623
Query 1727 CCACTTGTTTCACTCATTCAAGACCAGATAATGAACTTATTGCAGACCAATATATCTGCT 1786
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1624 CCACTTGTTTCACTCATTCAAGACCAGATAATGAACTTATTGCAGACCAATATAGCTGCT 1683
Query 1787 GCTTCCTTAAGTGCCGGAATGGAATGGGCTGAACAACTAGAGATACTTCAGGAGCTGAGC 1846
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1684 GCTTCCTTAAGTGCCGGAATGGAGTGGGCTGAACAGCTAGAGATACTTCAGGAGCTGAGC 1743
Query 1847 TCTGAGAAGTCTAAATACAAGTTACTGTATGTAACACCAGAAAAAGTGGCAAAAAGTGAA 1906
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TCTGAGAATTCTAAATACAAGTTACTGTATGTAACACCAGAAAAAGTGGCAAAAAGTGAA 1803
Query 1907 TCCCTTTTAAGGCACCTCGAAATCTTAAACTCCCGTAGTTTGCTTGCTCGATTTGTTATT 1966
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 TCCCTTATAAGGCACCTCGAAATCTTAAACTCCCGTAGTTTGCTTGCTCGATTTGTTATT 1863
Query 1967 GATGAAGCTCATTGTGTGAGTCAGTGGGGGCATGACTTTCGACCTGACTACCAGGGTCTT 2026
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1864 GATGAAGCTCATTGTGTGAGTCAGTGGGGGCATGACTTTCGACCAGACTACCAGGGTCTT 1923
Query 2027 GGTGTTCTGAAGCAGAAGTTTCCAAACATTCCCATGTTAGCTTTGACAGCTACTGCAACA 2086
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1924 GGTGTTCTGAAGCAGAAGTTTCCTAACATTCCCATGTTAGCTTTGACAGCTACTGCAACA 1983
Query 2087 ACCAGCGTGAAA-GAAGATGTTGTACAAGCTCTCGGGCTGGTAAACTGTGTTGTTTTCCG 2145
|||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1984 ACCAGCGT-AAAGGAAGATGTTGTACAAGCTCTTGGGCTGGTAAACTGTGTTGTTTTCCG 2042
Query 2146 GCAAAGTTTTAATCGCCCTAATCTATGGTATTCTGTTGTTCCCAAGACAAATAAGTGTTT 2205
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2043 GCAAAGTTTTAATCGCCCTAATCTATGGTATTCTGTTGTTCCCAAGACGAATAAGTGTCT 2102
Query 2206 GGAAGATATTGACAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTG 2265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 GGAAGATATTGACAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTG 2162
Query 2266 TCTTTCAAGAATGGACTGCGAAAAAGTCACGGAAGCATTGCGGGTGTTTGGCCATAAAGC 2325
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2163 TCTTTCAAGAATGGACTGCGAAAAAGTCACGGAAATGTTGCGGGCGTTTGGCCATAAAGC 2222
Query 2326 GGCCTTCTACCATGGCAGTATGGATCCTGGTAAACGTGCCTTTGTACAGAAACAATGGAG 2385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2223 GGCCTTCTACCATGGCAGTATGGATCCTGGTAAACGTGCCTTTGTACAGAAACAATGGAG 2282
Query 2386 CAAGGATGAAATCAATATAATATGTGCTACAGTGGCATTTGGAATGGGAATCAATAAGCC 2445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 CAAGGATGAAATCAATATAATATGTGCTACAGTGGCATTTGGAATGGGAATCAATAAGCC 2342
Query 2446 TGATGTTCGTTTTGTAATTCATCATTCTCTACCAAAGTCCATAGAAGGCTATCATCAGGA 2505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 TGATGTTCGTTTTGTAATTCATCATTCTCTACCAAAGTCCATAGAAGGCTATCATCAGGA 2402
Query 2506 ATGTGGTCGTGCTGGTAGAGACGGCCAGAGGTCATCATGTGTTTTGTATTACAGTTACAC 2565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2403 ATGTGGTCGTGCTGGTAGAGACGGCCAGAGGTCATCATGTGTTTTGTATTACAGTTACAC 2462
Query 2566 TGATTATATTCGAGTGAAGCATATGATTAGCCAAGGAGGACTTGGCCAAGGCCAGATGAA 2625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2463 TGATTATATTCGAGTGAAGCATATGATTAGCCAAGGAGGACTTGGCCAAGGCCAGATGAA 2522
Query 2626 AATGGGATATAATTGCAAAGCAAGTTCAGGGAGGATGCTCGAAACGAACACGGAAAACCT 2685
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2523 AATGGGATATAATTGTAAAGCAAGTTCAGGGAGGATGCTCGAAACGAACACGGAAAACCT 2582
Query 2686 TCTCCGCATGGTTAGTTACTGTGAAAATGAGGTGGATTGTCGACGTTTCTTACAGCTAGT 2745
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2583 TCTCCGCATGGTTAGTTACTGTGAAAATGAGGTGGACTGTCGACGTTTCCTACAGCTAGT 2642
Query 2746 TCATTTGGGAGAAAAATTTGATTCGACAAACTGCAAAAACACATGTGATAATTGTTCCAG 2805
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2643 TCATTTGGGAGAAAAATTTGATTCAACAAACTGCAAAAAAACATGTGATAATTGTTCCAG 2702
Query 2806 CAGCAAAATTTTGATTGACAAAGATGTAACTGTGATTGCAAGGCAACTGGTGGCACTGGT 2865
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2703 CAGCAAAAGTTTGATTGACAAAGATGTAACTGTGATTGCAAGGCAACTGGTGGAACTGGT 2762
Query 2866 TAAGCTAACAGGAGAAAGATTTTCGTCAGCTCATATTGTAGAAATCTACAGGGGATCCTT 2925
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2763 TAAGCTAACAGGAGAAAGGTTTTCGTCAGCTCATATTGTAGAAATCTACAGGGGATCCTT 2822
Query 2926 AAACCAGTCGGTCAAGAGAAACAGACAAGACACTTTGCACCTCCACGGAGCAGGAAAGCA 2985
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2823 AAACCAGTCGGTCAAGAGAAACAGACAAGAGACTTTGCACCTCCACGGAGCAGGAAAGCA 2882
Query 2986 TTTAACTAAAAGTGAAGCCTCTCGTATTTTGCACTACCTTGTGACAGAGGATATTCTCGC 3045
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2883 TTTAGCTAAAAGTGAAGCCTCTCGTATTTTGCACTATCTTGTGACAGAGGATATTCTCGC 2942
Query 3046 AGAGGGTGTTaaaaaaaGTGAACTGTATGGATCTGTATCGTCATTGCTGAAGGTGAACAG 3105
||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 2943 AGAGGGTGTTAGAAAAAGTGATCTGTATGGATCTGTATCGTCGTTGCTGAAGGTGAATAG 3002
Query 3106 ATCAAAGGCCGCCTCGCTCTTATCTGGAGGCCAGAGTATAACAATGAGATTTCCTTCGAC 3165
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 3003 ATCAAAGGCCGCCTCGCTCTTATCTGGAGGCCAGAGTATAACGATGAGGTTTCCTTCGAC 3062
Query 3166 CATAAAAGTGTCAAAGCAGAGCAAATCCACAGCAAATCCAGCAAAAGTTCCACTTAAGCA 3225
|||||||| |||||||| |||||||||||||||||| || ||||||| |||||
Sbjct 3063 CATAAAAGCGTCAAAGCCGAGCAAATCCACAGCAAA---AG------TTCCACTAAAGCA 3113
Query 3226 AACTACCCTTCCAATGGCAAAAGCTGCCCCACAAGATTCGAATCTCTCCGGCATTTTGTT 3285
|||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 3114 AACTACTCTTCCAATGGCAAAAGCTGCCCCACAAGATTCGAATCTCCCCCACATTTTGTT 3173
Query 3286 GACAGCCTTGAAAAATCTTCGGACTGATATTGTCAAAGAATCGC-CAGATTTAGTCATGG 3344
||||||||||||||| ||||| ||||||||||||||||||| | ||||| ||||||||
Sbjct 3174 GACAGCCTTGAAAAAGCTTCGTTCTGATATTGTCAAAGAATC-CTCAGATGGAGTCATGG 3232
Query 3345 CATATCATATATTCGGCAATGCGACGCTTAAAGAGATAAGTAAACGACTTCCCAGAACCA 3404
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 3233 CATATCATATATTCGGCAATGCGACGCTTGAACAGATAAGTAAACGACTTCCCAGAACCA 3292
Query 3405 AAGAGGAACTCCTTGATATCAATGGTCTAGGAAAAGCCAAGGTGAGCAAATACGGAGATC 3464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3293 AAGAGGAACTCCTTGATATCAATGGTCTAGGAAAAGCCAAGGTGAGCAAATACGGAGATC 3352
Query 3465 GGTTATTGGAAACCATAGATTCAACCATCAACGACCACTACAAAACCCGTCCCGGTTCAG 3524
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3353 GGTTATTGGAAACCATATATTCAACCATCAACGACCACTACAAAACCGGTCCCGGTTCAG 3412
Query 3525 GGAAGAGGAGAAGAGACGAGAACGTTAATCCGAATGTAGCAGAAGATGATGATCCCGATT 3584
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
Sbjct 3413 GGAAGAGGAGAAGAGACGAGAACATTTGCCCGAATGTAGCAGACGATGATGATCCCGACT 3472
Query 3585 GGAGTGCGAGTCAGTCTCACAAAAAGGTAGTGAAGAACAAAAAATAA 3631
||| |||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 3473 GGACTGCGAGTCAGTCCCACAAAAAGGCAGTGAAGAACAAAAAGTAA 3519
> Ahg471231 jgi|Araly1|471231|fgenesh2_kg.1__1185__AT1G10930.1
Length=3923
Score = 2182 bits (1181), Expect = 0.0
Identities = 2128/2581 (82%), Gaps = 81/2581 (3%)
Strand=Plus/Plus
Query 973 TGTGGATATATTTACTTCCAGAAGAGAAGAAGAGCAAGGTTTGCCTCCTGAAATATGTTC 1032
|||||||| | | |||||||| |||||||||| || ||||||||||| |||||||
Sbjct 957 TGTGGATAGAAGTGCTTCCAGATTAGAAGAAGAGTGCTGTCTGCCTCCTGAATTATGTTC 1016
Query 1033 CAACTGTAGTCATGGAATAAAGCTAGGGCTTTGTCCTGAAGCTTCTACCCATGTGGAACA 1092
|||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1017 CAACTGTAGTCATGGAATAAAGTTAGGGCTTTGTCCAGAAGCTTCAACCCATGTGGAACA 1076
Query 1093 AATGAAGGATACGCTGCTTGCAATATCAAATGAAATCCTCGACAATACTTA-TGACCTGG 1151
|||||||| | |||||||||||||||||||| |||| ||| || | || |||||||
Sbjct 1077 GATGAAGGACGTGTTGCTTGCAATATCAAATGAACTCCTTGACGATGC-TACTGACCTGA 1135
Query 1152 GCCCTGATCATGTTGAACAGCTTCATCAAAAGAGATTACTGTTGAA-AAAGCAAATCCAG 1210
| ||| ||| |||||||||||||| |||| ||||||||| | |||| ||| ||||| |||
Sbjct 1136 GTCCTTATCGTGTTGAACAGCTTCGTCAAGAGAGATTACAGCTGAAGAAA-CAAATTCAG 1194
Query 1211 CAGCTCGAGATCCTTATCCATA-ATAAAGAAAGGAAAAAATCTCAGTGTTTGGT-ATCTA 1268
|||||||||| || ||||| | ||||||||||| |||||||||||| ||| || |||||
Sbjct 1195 CAGCTCGAGAACCATATCC-GAGATAAAGAAAGGCAAAAATCTCAGT-TTTCGTCATCTA 1252
Query 1269 TACCTTCTCATA-ATACTCAGTATGAAACACCTCAAA-CAACAAATCT-TGAGGTGGTTT 1325
| || ||| || | | ||||||||||||||| ||| |||||||| | | | ||| |
Sbjct 1253 CAGCTACTCGTACTTTC-CAGTATGAAACACCT-AAATCAACAAAT-TATAAAATGGATC 1309
Query 1326 ATGGGCAGACAGATTCTCCAACTCATGTAAAAGAGCAAGGCAGATGTGTAACTGATAACT 1385
| || || |||| || | | ||| ||| || |||||||||| || ||||| ||
Sbjct 1310 AACCACAAACTGATTTTCGAGCACATCTAAGTGACCAAGGCAGATATGCCGGTGATAGCT 1369
Query 1386 GGAATATGCCAAGAGACTATTTAGTTTCTAAAGAGAGGTATGATATTTCATCTGGTTCTG 1445
|||| | ||||||||| | || ||||| || || |||| | ||||||||| | |||
Sbjct 1370 GGAACACGCCAAGAGATTCTTCCTTTTCTGTTGATAGATATGGTCTTTCATCTGCTCCTG 1429
Query 1446 AAGAGAGGGAACAATCTGTTTCC-GAGGTTATAGATGTCA-CTGATACCG-AGAGTTCAA 1502
||||||||||| || || |||| || |||| || || | || | || | || ||||||
Sbjct 1430 TAGAGAGGGAACCATATG-TTCCAAAGATTATTGACGTGACCT-ACACTGAAG-GTTCAA 1486
Query 1503 ATGACAAAAAGTGGACCAGTAGTGATTTTCCTTGGACGAA-AAATCTGGAGGTCT-ATAA 1560
| ||||||||||||| |||| |||| ||||| ||||| || ||| |||||||| | ||||
Sbjct 1487 ACGACAAAAAGTGGAGCAGTCGTGAATTTCCCTGGAC-AAGAAAACTGGAGGT-TAATAA 1544
Query 1561 CAAATTAGTGTTTGGAAACCACTCATTTCGACCCAACCAAAGAGAGATCATTAATGCTAC 1620
|||| |||||||||||| || || |||||||| ||||| ||||| || || ||||| ||
Sbjct 1545 CAAAAAAGTGTTTGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAAC 1604
Query 1621 AATGAGTGGTTGTGATGTTTTTGTTTTGATGCCAACCGGAGGGGGGAAAAGCTTAACATA 1680
||||||||| | |||||||||||||||||||||||| ||||| ||||| || || |||||
Sbjct 1605 AATGAGTGGCTCTGATGTTTTTGTTTTGATGCCAACTGGAGGAGGGAAGAGTTTGACATA 1664
Query 1681 TCAGCTCCCTGCTCT-ACTCTGTGCAGGAATAACATTAGTCATTTCTCCACTTGTTTCAC 1739
||||||||| ||||| | |||||| |||||||||||||||||||||||||||||| || |
Sbjct 1665 TCAGCTCCCCGCTCTGA-TCTGTGGAGGAATAACATTAGTCATTTCTCCACTTGTGTCGC 1723
Query 1740 TCATTCAAGACCAGATAATGAACTTATTGCAGACCAATATATCTGCTGCTTCCTTAAGTG 1799
| ||||||||||||||||||||| |||||||| |||||||| | ||||||||| ||||||
Sbjct 1724 TTATTCAAGACCAGATAATGAACCTATTGCAGGCCAATATACCGGCTGCTTCCCTAAGTG 1783
Query 1800 CCGGAATGGAATGGGCTGAACAACTAG-AGATAC-TTCAGGAGCTGAGCTCTGAGAAGTC 1857
|||| |||||||||||||||||||| | |||| | |||||||||||| || ||| | ||
Sbjct 1784 CCGGTATGGAATGGGCTGAACAACT-GAAGAT-CTTTCAGGAGCTGAATTCCGAGCATTC 1841
Query 1858 TAAATACAAGTTACTGTATGTAACACCAGAAAAAGTGGCAAAAAGTGAATCCCTTTTAAG 1917
||| |||||||| || ||||| ||||| ||||||||||||||||| || || ||||| ||
Sbjct 1842 TAAGTACAAGTTGCTATATGTCACACCTGAAAAAGTGGCAAAAAGCGATTCTCTTTTGAG 1901
Query 1918 GCACCTCGAAATCTTAAACTCCCGTAGTTTGCTTGCTCGATTTGTTATTGATGAAGCTCA 1977
||| || |||| |||||| || ||| ||||||||||||| ||||||||||||||||||||
Sbjct 1902 GCATCTGGAAAACTTAAATTCTCGTGGTTTGCTTGCTCGGTTTGTTATTGATGAAGCTCA 1961
Query 1978 TTGTGTGAGTCAGTGGGGGCATGACTTTCGACCTGACTACCAGGGTCTTGGTGTTCTGAA 2037
||||||||| || |||||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct 1962 TTGTGTGAGCCAATGGGGGCATGACTTTCGACCAGACTACCAGAGTCTTGGTATTCTGAA 2021
Query 2038 GCAGAAGTTTCCAAACATTCCCATGTTAGCTTTGACAGCTACTGCAACAACCAGCGTGAA 2097
|||||| ||||| |||||||| |||||||||| |||||||| |||||| |||| |||||
Sbjct 2022 GCAGAAATTTCCCAACATTCCTGTGTTAGCTTTAACAGCTACAGCAACAGCCAGTGTGAA 2081
Query 2098 AGAAGATGTTGTACAAGCTCTCGGGCTGGTAAACTGTGTTGTTTTCCGGCAAAGTTTTAA 2157
||||||||| |||||||| || || || || |||||||| || |||||||||||||||||
Sbjct 2082 AGAAGATGTGGTACAAGCCCTTGGCCTTGTTAACTGTGTCGTGTTCCGGCAAAGTTTTAA 2141
Query 2158 TCGCCCTAATCTATGGTATTCTGTTGTTCCCAAGACAAATAAGTGTTTGGAAGATATTGA 2217
||| || |||||||||||||| ||||||||||||||||| |||||| ||||||| || ||
Sbjct 2142 TCGTCCAAATCTATGGTATTCCGTTGTTCCCAAGACAAAAAAGTGTCTGGAAGACATCGA 2201
Query 2218 CAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTGTCTTTCAAGAAT 2277
||| ||||| |||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 2202 CAAATTTATTAAGGAAAACCATTTTGATGAATGTGGAATTATATATTGTCTTTCAAGAAT 2261
Query 2278 GGACTGCGAAAAAGTCACGGAAGC-ATTGCGGGTGTTTGGCCATAAAGCGGCCTTCTACC 2336
|||||||||||||||| | ||| | |||| || |||||| |||||| | || |||||||
Sbjct 2262 GGACTGCGAAAAAGTCTCTGAA-CGGTTGCAGGAGTTTGGTCATAAAACAGCATTCTACC 2320
Query 2337 ATGGCAGTATGGATCCTG-GTAAACGTGCCTTTGTACAGAAACAATGGAGCAAGGATGAA 2395
||||||||||||| |||| | |||||||||||| |||||| ||||||||||||||| |||
Sbjct 2321 ATGGCAGTATGGAGCCTGAG-AAACGTGCCTTTATACAGACACAATGGAGCAAGGACGAA 2379
Query 2396 ATCAATATAATATGTGCTACAGTGGCATTTGGAATGGGAATCAATAAGCCTGATGTTCGT 2455
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 2380 ATCAATATAATATGTGCTACTGTGGCATTTGGAATGGGAATCAACAAGCCTGATGTCCGC 2439
Query 2456 TTTGTAATTCATCATTCTCTACCAAAGTCCATAGAAGGCTATCATCAGGAATGTGGTCGT 2515
||||| |||||||| || || || ||||| ||||||||||||||||||||||||||||||
Sbjct 2440 TTTGTTATTCATCACTCGCTCCCGAAGTCTATAGAAGGCTATCATCAGGAATGTGGTCGT 2499
Query 2516 GCTGGTAGAGACGGCCAGAGGTCATCATGTGTTTTGTATTACAGTTACA-CTGATTATAT 2574
||||| || || |||||| ||||||| ||||||||||||||| |||| | || |||||
Sbjct 2500 GCTGGCAGGGATGGCCAGCGGTCATCTTGTGTTTTGTATTACGGTTATGGC-GACTATAT 2558
Query 2575 TCGAGTGAAGCATATGATTAGCCAAGGAGGACTTGGCCAAGGCCAGATGAAAA-TGGGAT 2633
||||| |||||||||||||||||||||||| ||| |||| ||| ||| || |||| |
Sbjct 2559 ACGAGTTAAGCATATGATTAGCCAAGGAGGAGTTGACCAAAGCCCCATGGCAACTGGG-T 2617
Query 2634 ATAATTGCAAAGCAAGTTCAGGGAGGATGCTCGAAACGAACACGGAAAACCTTCTCCGCA 2693
||||| | |||||||||||||||||| || ||||| || || ||||||||||||||||
Sbjct 2618 ATAATCGTGTAGCAAGTTCAGGGAGGATACTTGAAACAAATACCGAAAACCTTCTCCGCA 2677
Query 2694 TGGTTAGTTACTGTGAAAATGAGGTGGATTGTCGACGTTTCTTACAGCTAGTTCATTT-G 2752
||||||| ||||| |||||||||||||| || ||||| ||| |||| ||||| ||||| |
Sbjct 2678 TGGTTAGCTACTGCGAAAATGAGGTGGAATGCCGACGCTTCCTACAACTAGTGCATTTCG 2737
Query 2753 GGAGAAAAATTTGATTCGACAAACTGCAAAAACACATGTGATAATTGTTCCAGCAG-CAA 2811
|| |||||||| ||||| |||||||||||||| || ||||||||||||| ||| || ||
Sbjct 2738 GG-GAAAAATTCGATTCCACAAACTGCAAAAAAACGTGTGATAATTGTTGCAGTAGTCAG 2796
Query 2812 AATTTTGATTGACAAAGATGTAAC-TGTGATTGCAAGGCAACTGGTGGCACTGGTTAAGC 2870
| ||| ||||||||||||||| || | |||| ||||||||||||| | |||||| ||||
Sbjct 2797 AGTTT-GATTGACAAAGATGTCACCT-TGATCACAAGGCAACTGGTTGAACTGGTGAAGC 2854
Query 2871 TAACAGGAGAAAGATTTTCGTCAGCTCATATTGTAGAAATCTACAGGGGATCCTTAAACC 2930
|||||||||||| ||||| || ||||||||| | ||| ||||||| || ||||||||||
Sbjct 2855 AAACAGGAGAAAGGTTTTCTTCTGCTCATATTCTTGAAGTCTACAGAGGTTCCTTAAACC 2914
Query 2931 AG-TCGGTCAAGAGAA-ACAGACAAGACACTTTGCACCTCCACGGAGCAGGAAAGCATTT 2988
| | |||||||| || ||||||| || |||||||| ||||| |||| ||||| |||||
Sbjct 2915 AAAT-GGTCAAGA-AACACAGACATGAGACTTTGCAGCTCCATGGAGTTGGAAAACATTT 2972
Query 2989 AACTAAAAGTGAAGCCTCTCGTATTTTGCACTACCTTGTGACAGAGGATATTCTCGCAGA 3048
| | |||| ||||| ||||||||| || ||||| || || |||||||| ||||| | ||
Sbjct 2973 ATCGAAAATTGAAGTCTCTCGTATCTTACACTATCTCGTAACAGAGGACATTCTTGTGGA 3032
Query 3049 GGGTGTTaaaaaaaGTGA-ACTGTATGGATCTGTATCGTCATTGCTGAAGGTGAACAGAT 3107
| ||||| |||||||| | ||||||||||||| || || ||||| |||||||| | |
Sbjct 3033 AGATGTTAGGAAAAGTGATA-TGTATGGATCTGTGTCATCGTTGCTCAAGGTGAATA-AC 3090
Query 3108 -CAAAGGCCGCCTCGCTCTTATCTGGAGGCCAGAGTATAACAATGAGATTTCCTTCGACC 3166
||||||| ||| || || |||||| |||||| ||||| |||| ||| ||||| |
Sbjct 3091 GCAAAGGCTACCTTACTATTTTCTGGAAGCCAGACTATAATGATGAAATTCCCTTCTTCT 3150
Query 3167 ATAAAAGTGTCAAAGC-AGAGCAAATCCAC--AGCAAATC-CAGCAAAAGTTCCACT--- 3219
||||||| | ||||| | || ||| | | ||||| | ||||||||| ||| ||
Sbjct 3151 GTAAAAGTATTAAAGCCA-AGTAAA-C-AGGGAGCAAC-CGCAGCAAAAGGTCCTCTAAC 3206
Query 3220 -T-A-AG---CAAACTACCCTTCCAATGGCAA-A-A-GCTGC-CC-C-ACAAGATTCGAA 3267
| | || |||| ||| |||||| | ||| | | | ||| || | | |||||| |||
Sbjct 3207 ATCAGAGAAGCAAAGTACTCTTCCACTTACAACAGAAGATGCTCCTCCAAAAGATTTGAA 3266
Query 3268 TCTCTCCGGCATTTTGTTGACAGCCTTGAA-AAATCTTCGGACTGATATTGTCAAAGAAT 3326
|||||| | || ||| |||||||||| ||| ||||| || | | |||||||||||
Sbjct 3267 TCTCTCTGCCAACATGTACACAGCCTTGAGGAAA-CTTCGTACAGCTCTTGTCAAAGAAG 3325
Query 3327 CGCCAGATT-TAGTCATGGCATATCATATATTCGGCAATGCGACGCTTAAAG-AGATAAG 3384
| || ||| | |||||||||||||||||||| |||| | |||||| | | |||||||
Sbjct 3326 CCCCTGATGGT-GTCATGGCATATCATATATTTATCAATTCAACGCTTCA-GCAGATAAG 3383
Query 3385 TAAACGACTTCCCAGAACCAAAGAGGAACTCCTTGATATCAATGGTCTAGGAAAAGCCAA 3444
| |||| |||||||||||||||||||||||||||| |||||||| || || || |||||
Sbjct 3384 CAGACGAATTCCCAGAACCAAAGAGGAACTCCTTGAAATCAATGGCCTTGGGAAGGCCAA 3443
Query 3445 GGTGAGCAAATACGGAGATCGGTTATTGGAAACCATAGATTCAACCATCAACGACCACTA 3504
|| ||||| ||||| |||||||| |||||||| ||||| |||| | ||||| ||||
Sbjct 3444 AGTAAGCAAGTACGGTGATCGGTTGTTGGAAACAATAGAAACAACGGTGAACGAGTACTA 3503
Query 3505 C 3505
|
Sbjct 3504 C 3504
Score = 87.9 bits (47), Expect = 5e-16
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 3513 GTCCCGGTTCAGGGAAGAGGAGAAGAGACGAGAACGTTAATCCGAATGTAGCAGAAGATG 3572
|||||| |||||||||||||||||||||||||||| ||| ||| |||||||| || ||||
Sbjct 3542 GTCCCGATTCAGGGAAGAGGAGAAGAGACGAGAACATTAGTCCAAATGTAGCCGAGGATG 3601
Query 3573 ATGAT 3577
|||||
Sbjct 3602 ATGAT 3606
> Ahg924952 jgi|Araly1|924952|scaffold_200513.1
Length=217
Score = 228 bits (123), Expect = 3e-58
Identities = 156/171 (91%), Gaps = 5/171 (3%)
Strand=Plus/Minus
Query 11 GAGAGTGAACCTTTTTAACTATCCCGCCATACGAAAATCGCAGAAA-GCTGTAATTGGAG 69
||||||||||||||||||||||||||||||||| ||||| || ||| ||||||| |||||
Sbjct 215 GAGAGTGAACCTTTTTAACTATCCCGCCATACGGAAATCACA-AAATGCTGTAACTGGAG 157
Query 70 ACGCGCTCTTTCTTCTCTCTCGCCTCGTGATCTTACCGGAAAAGTTTCGTCGCCGGAGTT 129
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 156 ACGCGCTCTTTCTTCTCTCTCTCCTCGAGATCTTACCGGAAAAGTTTCGCCGCCGGAGTT 97
Query 130 TCACTATTTCGCCGCAGAAGCACTAGAGTTTCATCTG-TTTGAAAAT-TAA 178
|| ||||| ||||||||||||| ||||||||| ||| ||||||||| |||
Sbjct 96 TCCCTATTCCGCCGCAGAAGCAAGAGAGTTTCA-CTGATTTGAAAATGTAA 47
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146521656050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5