BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60940.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1 1993 0.0
Ahg919903 jgi|Araly1|919903|scaffold_101184.1 1149 0.0
> Ahg475237 jgi|Araly1|475237|fgenesh2_kg.2__367__AT1G60940.1
Length=1585
Score = 1993 bits (1079), Expect = 0.0
Identities = 1374/1504 (91%), Gaps = 69/1504 (5%)
Strand=Plus/Plus
Query 1 AAGAGCCATCGTGACTTCGAGAGAAGAAGCCAGCAAGGAACGATGGAGATTATTACGGca 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAGCCATCGTGACTTCGTGAGAAGAAGCCAGCAAGGAACGATGGAGATTATTACGG-- 58
Query 61 tcatcatcatcatcatcatcatTGTAATTCGTAATCATATCTTCTTTTGGAATTTCTTCA 120
|||||||||||||||||||| || | || | || || || |||||||||||
Sbjct 59 -------CATCATCATCATCATTGTAA-TC-T--TC-T-TC-TC--TTAGAATTTCTTCA 102
Query 121 CGGATAAGAAAAAAGGATATCGACAATTTCGCTTTTGCTTTC-AAAA-TCTCATTCTATC 178
|||||||||||||||||||||||||||||||||||||||||| |||| || |||| | ||
Sbjct 103 CGGATAAGAAAAAAGGATATCGACAATTTCGCTTTTGCTTTCAAAAATTC-CATT-T-TC 159
Query 179 ACTTTG-TGCCTTTTTTAGCCATCGCGAAAAACCTCTGAATCGCATCCCTTGATTTTCTG 237
|||||| | ||||||||| | |||||||||||||||| |||||| |||||| | ||||||
Sbjct 160 ACTTTGTTCCCTTTTTTAACAATCGCGAAAAACCTCTAAATCGCTTCCCTTCAATTTCTG 219
Query 238 GGTTTGTGACTTTGTGTA-GTGGA-A-ATTAGGCTTGTTGTTTGAT-TTCG-CTACGAGA 292
||||| | | ||| | | |||| | || || ||||||| | || | ||| |||
Sbjct 220 GGTTT-TCAATTT-T-CACTTGGAGATTTTGGGGGAATTGTTTG-TGTT-GTTTACAAGA 274
Query 293 AAATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCGAGGC 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 275 AAATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCTAGGC 334
Query 353 TCATGAGAGTCAAAAACTCCAAGGAACTCGTTGCTATGAAGTACATCGAGCGTGGACCTA 412
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 335 TCATGAGAGTCAAAAACTCCAAAGAACTCGTTGCTATGAAGTACATCGAGCGTGGCCCAA 394
Query 413 AGATTGATGAGAACGTGGCGAGAGAGATTATTAACCACAGATCACTTCGTCATCCCAATA 472
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 395 AGATTGATGAGAACGTGGCGAGAGAGATTATTAATCATAGATCACTTCGTCATCCCAATA 454
Query 473 TTATCCGGTTTAAGGAGGTGGTTTTGACACCAACGCACATCGCCATTGCTATGGAATATG 532
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 455 TAATCCGGTTTAAGGAGGTGGTTTTGACACCAACACACATCGCCATTGCTATGGAATTTG 514
Query 533 CTGCTGGCGGTGAGCTATTTGAGCGTATATGTAGCGCTGGAAGATTCAGTGAGGATGAGG 592
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 515 CTGCTGGCGGTGAGTTATTTGAGCGTATATGTAGTGCTGGAAGATTCAGTGAGGATGAGG 574
Query 593 CAAGATACTTTTTCCAGCAGCTTATCTCAGGAGTCAGCTATTGTCATGCTATGCAAATAT 652
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 575 CAAGATACTTTTTCCAGCAGCTTATATCTGGAGTCAGCTATTGCCATGCTATGCAAATAT 634
Query 653 GCCACAGAGATCTGAAGCTTGAAAATACCCTCTTAGATGGAAGTCCTGCTCCACGCCTGA 712
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 635 GCCATAGAGATCTGAAGCTCGAAAATACCCTCTTGGATGGAAGTCCTGCTCCACGCCTGA 694
Query 713 AGATCTGTGATTTTGGTTATTCCAAGTCCTCACTGTTGCACTCTATGCCCAAATCAACTG 772
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AAATCTGTGATTTTGGTTATTCCAAGTCCTCACTGTTGCACTCTATGCCCAAATCAACTG 754
Query 773 TTGGAACTCCAGCATATATTGCACCTGAGGTTCTTTCTCGCGGAGAGTATGATGGCAAGA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TTGGAACTCCAGCATATATTGCACCTGAGGTTCTTTCTCGCGGAGAGTATGATGGCAAGA 814
Query 833 TGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCTGGTGGGAGCATACCCAT 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCTGGTGGGAGCATACCCAT 874
Query 893 TTGAAGACCAAGAGGATCCCAAAAACTTCaaaaaaaCAATACAAAGAATAATGGCTGTCA 952
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TTGAAGACCAAGAGGATCCTAAAAACTTCAAAAAAACAATACAAAGAATAATGGCTGTCA 934
Query 953 AGTACAAGATCCCGGACTATGTCCATATCTCACAAGATTGCAAACATCTCCTCTCCCGTA 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 AGTACAAGATCCCGGACTATGTCCATATCTCACAAGATTGCAAACATCTCCTCTCCCGTA 994
Query 1013 TATTTGTCACCAACTCGAATAAGAGGATTACGATAGGTGACATCAAGAAACATCCATGGT 1072
|||||||| ||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 995 TATTTGTCGCCAACTCGAATAAGAGGATTAAGATAGCTGAGATCAAGAAACATCCATGGT 1054
Query 1073 TCCTAAAGAACCTGCCAAGGGAACTTACAGAAATAGCTCAAGCTGCATACTTCAGGAAAG 1132
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 1055 TCCTAAAGAACCTGCCAAGGGAACTTACAGAAACAGCTCAAGCTGTATACTTCAGTAAAG 1114
Query 1133 AGAACCCGACATTCTCACTCCAAAGCGTCGAAGAGATAATGAAGATTGTGGAAGAGGCAA 1192
|||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1115 AGAACCCGACATTCTCGCTCCAAAGTGTCGAAGAGATCATGAAGATTGTGGAAGAGGCAA 1174
Query 1193 AAACTCCAGCTCGTGTTTCTCGGTCGATTGGAGCATTTGGGTGGGGAGGaggagaagatg 1252
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1175 AAACTCCAGCTCCTGTTTCTCGATCGATTGGAGCATTTGGGTGGGGAGGAGAAGAAGATG 1234
Query 1253 ccgagggcaaggaggaagatgcagaggaagaagttgaggaagtagaagaagaagaagacg 1312
||||||||| ||||||||| | | |||||||||||||||||||
Sbjct 1235 CCGAGGGCATGGAGGAAGA-G--G---------TTGAGGAAGTAGAAGAAGA-------- 1274
Query 1313 aagaagaTGAGTATGATAAGACGGTGAAGCAAGTGCATGCTAGCATGGGAGAAGTCCGAG 1372
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1275 -------TGAGTATGATAAGACAGTGAAGCAAGTGCATGCTAGCATGGGAGAAGTCCGAG 1327
Query 1373 TCAGTTaaaa-a-aa-a-a-GATTGATTTTCTTTTCACGAAAGTATTCTAAAACCaaaaa 1427
|||||||||| | || | | ||||| |||| |||||| |||||| |||||||||||||||
Sbjct 1328 TCAGTTAAAACACAATATAAGATTGGTTTTGTTTTCAAGAAAGTTTTCTAAAACCAAAAA 1387
Query 1428 aaaaagaaaaaaaaG-TTTTCGTTGGTCTGTCGAATTTGTCTCTTGCTCTGTGTTGAGTT 1486
|||| |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1388 AAAA-GAAAGAAAAGGTTTTCGTTGGTCTGTCGAATTTGTCTCTTGCTCTCTGTTGAGTT 1446
Query 1487 CTTA 1490
|||
Sbjct 1447 -TTA 1449
> Ahg919903 jgi|Araly1|919903|scaffold_101184.1
Length=1137
Score = 1149 bits (622), Expect = 0.0
Identities = 942/1094 (86%), Gaps = 31/1094 (3%)
Strand=Plus/Plus
Query 294 AATGGACAAGTACGAGCTTGTTAAAGACATCGGTGCTGGGAATTTTGGAGTGGCGAGGCT 353
|||||||||||||||||| || |||||||| |||||||||||||| |||||||| |||||
Sbjct 22 AATGGACAAGTACGAGCTGGTGAAAGACATAGGTGCTGGGAATTTCGGAGTGGCCAGGCT 81
Query 354 CATG-AGAGTCAAAAACTCCAAGGAACTCGTTGCTATGAAGTACATCGAGCGTGGACCTA 412
|||| || ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||
Sbjct 82 CATGAAG-GTCAAAAACTCTAAGGAACTTGTTGCCATGAAGTACATCGAGCGTGGTCCTA 140
Query 413 AGATTGATGAGAACGTGGCGAGAGAGATTATTAACCACAGATCACTTCGTCATCCCAATA 472
||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 141 AGATTGATGAGAACGTGGCAAGAGAGATCATTAATCACAGATCACTTCGCCATCCGAATA 200
Query 473 TTATCCGGTTTAAGGAGGTGGTTTTGACACCAACGCACATC--GCCATTGCTATGGAATA 530
| ||||||||||||||||| || ||||| ||||| | |||| |||||||||||||||||
Sbjct 201 TAATCCGGTTTAAGGAGGTTGTGTTGACTCCAAC-C-CATCTTGCCATTGCTATGGAATA 258
Query 531 TGCTGCTGGCGGTGAGCTATTTGAGCGTATATGTAGCGCTGGAAGATTCAGTGAGGATGA 590
||||||||| ||||| ||||| |||||||| || || ||||||||||| ||||| |||||
Sbjct 259 TGCTGCTGGTGGTGAACTATTCGAGCGTATCTGCAGTGCTGGAAGATTTAGTGAAGATGA 318
Query 591 GGCAAGATACTTTTTCCAGCAGCTTATCTCAGGAGTCAGCTATTGTCATGCTATGCAAAT 650
||| |||||||| ||||| || ||||| ||||| || || ||||| ||||||||||||||
Sbjct 319 GGCGAGATACTTCTTCCAACAACTTATATCAGGTGTTAGTTATTGCCATGCTATGCAAAT 378
Query 651 ATGCCACAGAGATCTGAAGCTTGAAAATACCCTCTTAGATGGAAGTCCTGCTCCACGCCT 710
||||||||||||||||||||| || ||||| ||| | |||||||||||||||||||| ||
Sbjct 379 ATGCCACAGAGATCTGAAGCTCGAGAATACGCTCCTGGATGGAAGTCCTGCTCCACGTCT 438
Query 711 GAAGATCTGTGATTTTGGTTATTCCAAGTCCTCACTGTTGCACTCTATGCCCAAATCAAC 770
||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 439 GAAAATCTGTGATTTTGGTTATTCCAAGTCCTCTCTGCTGCACTCTAGGCCCAAATCAAC 498
Query 771 TGTTGGAACTCCAGCATATATTGCACCTGAGGTTCTTTCTCGCG-GAGAGTATGATGGCA 829
|||||||||||||| ||||||||||||||||| |||||||| | |||| ||||||||||
Sbjct 499 AGTTGGAACTCCAGCGTATATTGCACCTGAGGTCCTTTCTCG-GAGAGAATATGATGGCA 557
Query 830 AGATGGCTGATGTATGGTCTTGTGGTGTGACTCTTTATGTCATGCTGGTGGGAGCATACC 889
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 558 AGATGGCTGATGTATGGTCCTGTGGTGTGACTCTTTATGTCATGCTGGTTGGAGCGTACC 617
Query 890 CATTTGAAGACCAAGAGGATCCCAAAAACTTCaaaaaaaCAATACAAAGAATAATGGCTG 949
||||||||||||| || || ||||||||||||| ||||||||||||| |||||||||||
Sbjct 618 CATTTGAAGACCAGGAAGACCCCAAAAACTTCAGGAAAACAATACAAAAAATAATGGCTG 677
Query 950 TCAAGTACAAGATCCCGGACTATGTCCATATCTCACAAGATTGCAAACATCTCCTCTCCC 1009
|| ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||
Sbjct 678 TCCAGTACAAGATCCCGGACTACGTCCACATCTCACAGGATTGTAAACATCTCCTTTCCC 737
Query 1010 GTATATTTGTCACCAACTCGAAT-AAGAGGATTACGATAGGTGACATCAAGAAACATCCA 1068
||||||||||| |||| || | | |||||||| || || | || ||||||||||| |||
Sbjct 738 GTATATTTGTCGCCAATTC-ACTCAAGAGGATAACCATTGCAGAAATCAAGAAACACCCA 796
Query 1069 TGGTTCCTAAAGAACCTGCCAAGGGAACTTACAGAAATAGCTCAAGCTGCATACTTCAGG 1128
|||||||| ||||| ||||||| ||||| ||||| | ||||||||||||||| |||| |
Sbjct 797 TGGTTCCTGAAGAATTTGCCAAGAGAACTCACAGAGACAGCTCAAGCTGCATATTTCAAG 856
Query 1129 AAAGAGAACCCGACATTCTCACTCCAAAGC-GTCGAAGAGATAATGAAGATTGTGGAAGA 1187
||||||||||| || ||||| ||||| | | || |||||||| |||||||| |||| ||
Sbjct 857 AAAGAGAACCCAACCTTCTCCCTCCAGA-CTGTTGAAGAGATCATGAAGATAGTGGCTGA 915
Query 1188 GGCAAAAACTCCAGC-TCGTGTTTCTCGGTCGATTGGAGCATTTGGGTGGGGAGGagga- 1245
|| ||||| || || || |||||| ||||| || |||| ||||| ||||||||| |
Sbjct 916 CGCCAAAACACC-GCCTCCTGTTTCCCGGTCCATCGGAGGTTTTGGCTGGGGAGGAA-AT 973
Query 1246 gaagatgccgagggcaaggaggaagatgcaga-g--g---a--ag-aagttgagga--ag 1294
| ||||| ||||| ||||||||||||||||| | | | || ||| ||||| ||
Sbjct 974 GGAGATGTAGAGGGAAAGGAGGAAGATGCAGAAGACGTGGAGGAGGAAGAGGAGGAGGAG 1033
Query 1295 -tagaagaagaagaagacgaagaagaTGAGTATGATAAGACGGTGAAGCAAGTGCATGCT 1353
| |||||||| |||||||| || ||||| || |||||||| || ||| |||| || ||
Sbjct 1034 GTGGAAGAAGAGGAAGACGATGAGGATGAATACGATAAGACTGTAAAGGAAGTACACGCA 1093
Query 1354 AGCATGGGAGAAGT 1367
|| ||| ||||||
Sbjct 1094 AG--TGG-AGAAGT 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5