BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60983.1
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924946 jgi|Araly1|924946|scaffold_200507.1 444 2e-124
Ahg924947 jgi|Araly1|924947|scaffold_200508.1 416 4e-116
> Ahg924946 jgi|Araly1|924946|scaffold_200507.1
Length=312
Score = 444 bits (240), Expect = 2e-124
Identities = 260/270 (96%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 1 ATGAAGTTAGCTGCAATTTTCTTGGTTTCTTGTGTCTTATTGTCTCTTCTCCCAAGCCTA 60
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 22 ATGAAGTTAGCTGCAATTTTCTTGGTTTCTTGTGTCTTATTCTCTCTTGTCCCAAGCCTA 81
Query 61 ACCATTGCGGAGAAAAGGCCGTGGTGTCCAACAAGAAAACAAATATTTGATGGTTCATGC 120
||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 82 ACCATAGCGGAGAAAAGGCCCTGGTGTCCAACAAGAAAACAAATATTTGATGGATCATGC 141
Query 121 AATAGAACTGATTACACACAATGCTTTAACGACTTAAGAAATACATGGGATGATATTGGA 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 142 AATAGAACTGATTACACACAATGCTTTAACGACTTAAGAAACACATGGGATGATATTGGA 201
Query 181 GATCTTTGTCCGACCGATTGCACTTGCACTCCTCAACCACAGAATAAACGTCTCTGTTAT 240
|||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 202 GATCTTGGTCCAACCGATTGCACTTGCACTCCTCAACCACAGAACAAACGTCTCTGTTAT 261
Query 241 TGTCGTTACTTGCCTTGTCCTAGTACCTAA 270
|||||||||||||||||||||||||| |||
Sbjct 262 TGTCGTTACTTGCCTTGTCCTAGTACTTAA 291
> Ahg924947 jgi|Araly1|924947|scaffold_200508.1
Length=313
Score = 416 bits (225), Expect = 4e-116
Identities = 255/270 (94%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 1 ATGAAGTTAGCTGCAATTTTCTTGGTTTCTTGTGTCTTATTGTCTCTTCTCCCAAGCCTA 60
|||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 23 ATGAAGTTAGCTGCAATTTTCTTGGTTTCTTGCGTCTTATTCTCTCTTGTCCCAAGCCTA 82
Query 61 ACCATTGCGGAGAAAAGGCCGTGGTGTCCAACAAGAAAACAAATATTTGATGGTTCATGC 120
||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 83 ACCATAGCGGAGAAAAGGCCCTGGTGTCCAACAAGAAAACAAATATTTGATGGATCATGT 142
Query 121 AATAGAACTGATTACACACAATGCTTTAACGACTTAAGAAATACATGGGATGATATTGGA 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 143 AATAGAACTGATTACACACAATGCTTTAACGACTTAAGAAACACATGGGATGATATTGGA 202
Query 181 GATCTTTGTCCGACCGATTGCACTTGCACTCCTCAACCACAGAATAAACGTCTCTGTTAT 240
|||||| |||| || ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 203 GATCTTGGTCCAACTGATTGCACTTGCACTCCTCAACCACAGAACAAGCGTCTCTGTTAT 262
Query 241 TGTCGTTACTTGCCTTGTCCTAGTACCTAA 270
|||||||||||||| ||||||||||| |||
Sbjct 263 TGTCGTTACTTGCCGTGTCCTAGTACTTAA 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9432500467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5