BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G60986.1

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924945 jgi|Araly1|924945|scaffold_200506.1                        571    2e-162


> Ahg924945 jgi|Araly1|924945|scaffold_200506.1
Length=408

 Score =  571 bits (309),  Expect = 2e-162
 Identities = 382/416 (92%), Gaps = 9/416 (2%)
 Strand=Plus/Plus

Query  53   gaaaaaacttacaagaaaaTATGAAGTTTGCTGCAATCTTGTTGGTTACTTGTGTCTTAT  112
            ||| |||||| |||||||||||||| |||||||||||||| || |||| |||||||||||
Sbjct  1    GAAGAAACTTGCAAGAAAATATGAAATTTGCTGCAATCTTCTTAGTTAATTGTGTCTTAT  60

Query  113  TCTCCCTTCTCCCAAGCCATCTTTCACAAGGTGAAGAATCAAGCATGAATATTGATGCGC  172
            ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  61   TCTCCCTTCTCTCAAGCCACCTTTCACAAGGTGAAGAATCAAGCATAAATATTGATGCGC  120

Query  173  AGAGAAGGCCATGGTGTCCGTCTAAAAAACAAGTGTTCGGTGGTTCGTGTGGAAATGATG  232
            ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct  121  AGAGAAGGCCATGGTGTCCGTCTAAAAAACAGGTGTTCAGTGGTTCGTGTGGAAATGATG  180

Query  233  GAGCACAACAATGTCTAAATAACTTATTAAGTACATGGGATCCAAGTGTAAGGCTTAGCC  292
            ||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||
Sbjct  181  GAGCACAACAATGTCTAAATAACTTATTATGGACATGGAATCCAAGTGTAAGGCTCAGCC  240

Query  293  C-AGTCTCCTGCAATTGCACTCCTCAACCTAACAACAATATTCTTTGCAGTTGTCCTAAC  351
            | | ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  241  CTA-TCTACTGCAATTGCACTCCTCAACCTAACAATAATATTCTTTGTAGTTGTCCTAAC  299

Query  352  ATGATTTGCCCATAGAAAACGTCTATTTAAGACCCAAACTGTTGTTCTAAATCATTTTTA  411
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct  300  ATGATTTGCCCATAGAAAACGTCTATTTAAGACCCAAACTGATGTTCTAAATCCTTTTTC  359

Query  412  TCTGTATCAATAATAATAATATATGTTTCAGTTTCTCGTGAAAACCCCGAAGACTT  467
            |||||||||| |||||        ||||||||||||  ||||||||||||||||||
Sbjct  360  TCTGTATCAAGAATAAC-------GTTTCAGTTTCTAATGAAAACCCCGAAGACTT  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19993528636


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5