BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60987.1
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907360 jgi|Araly1|907360|Al_scaffold_0002_441 344 5e-94
> Ahg907360 jgi|Araly1|907360|Al_scaffold_0002_441
Length=294
Score = 344 bits (186), Expect = 5e-94
Identities = 260/296 (88%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 63 ATGAAGTTTGTTGCAATCTTCTTGGTTACTTGTGTCTTATTCTCCCTTTTCCCAAGCCAC 122
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAAGTTTGTTGCAATCTTCTTAGTTACTTGTGTCTTCTTCTCCCTTTTCCCAAGCCAC 60
Query 123 CTGTCACAAGGTGAAGAATCAAGGATGAATATTAATGCGGAGAGAAGGCCATGGTGTCCG 182
|| |||||||||||||||||||| || || ||| |||| ||| |||| |||||||||||
Sbjct 61 CTTTCACAAGGTGAAGAATCAAGCATAAACATTGCTGCGCAGAAAAGGTCATGGTGTCCG 120
Query 183 TCTAAAATACAAATGTTTGATACTAATTGTGAAGTGGATGGAGCAAAACAATGTCTAGAT 242
||||| |||| |||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 121 GATAAAAGACAAGTGTTTGATGGTATTTGTGAAAAGGATGGAGCAAAACAATGTCTAGAT 180
Query 243 CTCTTAATAAGTACTTGGGATCCAAGTGTAAGGCTCA-CCCGAGTCTCTTGCATTTGCTC 301
|||||| ||||| ||||||||||||||||||| |||| ||| |||||| |||| ||||||
Sbjct 181 CTCTTATTAAGTTCTTGGGATCCAAGTGTAAGACTCAGCCC-AGTCTCCTGCACTTGCTC 239
Query 302 TGATTTTCCTTAC-AGGAATATGATGTGTAGTTGTCCTAATATGATTTGTCCCTAG 356
||||||||||||| | ||||| | |||||||||| |||||||| |||||||||
Sbjct 240 TGATTTTCCTTACTAC-AATATTCTTTGTAGTTGTCTTAATATGAAATGTCCCTAG 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25275493971
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5