BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G60995.1
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475227 jgi|Araly1|475227|fgenesh2_kg.2__357__AT1G60995.1 3269 0.0
> Ahg475227 jgi|Araly1|475227|fgenesh2_kg.2__357__AT1G60995.1
Length=2100
Score = 3269 bits (1770), Expect = 0.0
Identities = 2003/2113 (95%), Gaps = 25/2113 (1%)
Strand=Plus/Plus
Query 1 ATCTTCACTCTTCAATTTCTGTGGATTCGACAATCTCCCAGAACGAGAAG--A---A--A 53
||||||| || |||||| |||||||||||| ||||||||||||||||||| | | |
Sbjct 1 ATCTTCAATCCTCAATTGCTGTGGATTCGATAATCTCCCAGAACGAGAAGAAATCTACGA 60
Query 54 TCTACGATCCTCGCAACGGAGCAATTCAAATTCGATGACTACGTAGTGTTAACGAAGAAG 113
|||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 61 TCTACGATCCTCGCTACGGAGCAATTCAAATTCGATGACGACGTAGTTTTAACGAAGAAG 120
Query 114 ACGAAAAAGTGCATCGGAG-ATCCGAAATATGGATCCGGAGCAGACGTTTATTAGGGTTC 172
||| | ||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 121 ACGGAGAAGTGCATCGGAGAAT-CGCAATATGGATCCGGAGCAGACGTTTATTAGGGTTC 179
Query 173 AGGAGAGGTTTTCGCAGATCTTAACGCCAAGGATTAGAGGTTTCTTAGAGTATACTTACC 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGGAGAGGTTTTCGCAGATCTTAACGCCAAGGATTAGAGGTTTCTTAGAGTATACTTACC 239
Query 233 TCTTCGTTGCCATCACTTTGTTCTGTATCCTCGTTGTTATGCACGCCAATTATGTTCAGC 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTCGTTGCCATCACTTTGTTCTGTATCCTCGTTGTTATGCACGCCAATTATGTTCAGC 299
Query 293 AGCCTGGTTGTTCAAGTGAGCTGACTGGAGTTGAGTTAGCTGAAGCAGAGCTTATGCAAA 352
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 300 AGCCTGGTTGTTCAAGTGAGCTCACTGGAATTGAGTTAGCTGAAGCAGAGCTTATGCAAA 359
Query 353 TCAAGATAACAAGTGCAGGGTTGTGGTCACGTAATGATGAAAGTACTGCTGCAGATGTTC 412
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 360 TCAAGATAACAAGTGCAGGGTTGTGGTCACGTAATGATGAAAGTATTGCTGCTGATGTTC 419
Query 413 CTCGAGTTGTTGCTGCAACTGATAGTTTAGAAGTGTCAAAGACTGATCAAGAAAGCTCTA 472
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 420 CTCGAGTTGTAACTGCAACTAATAGTTTACAAGTGTCAAAGACTGATCAAGAAAGCTCTA 479
Query 473 CCAGTGAAGAAAATACCGATGATACATTTGTGAAAATTGATAAGGAAGAGCCCCGCAGTA 532
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 480 CCAGTGAAGAAAATGCCGATGATATATTTGTGAAAATTGATAAGGAAGAGCCCCGCACTA 539
Query 533 GTTTCTCAGTGTCTGCAAAAGAGAATGTCAGAGCAGCTATTCTTCGCTTTCTTAAAAAGT 592
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 GTTTCTCAGTGTCTGCAAAAGAGAATGTCAGAGCAGCTATTCTTCGCTTTCTCAAAAAGT 599
Query 593 GTTACAGGCGCATATCTTTCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTTAGAA 652
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 GTTATAGGCGCATATCTTTCGTTTTACAGCATACAGCACGGATCCTCAGAGGTGTAAGAA 659
Query 653 AAATATGGAACATCATTGGCATACCGCTAAATCTTGATGTGCCCAAATTGTTGCATGTAC 712
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 660 AAATATGGAACATCATTGGCATACCGTTGAATCTTGATGTGCCAAAATTGTTGCATGTAC 719
Query 713 TGTATATGGATAAAGTCAACTACTATGCAGTTCAGTGGCTTGAGAGTAAAACTCAAGAGT 772
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 720 TTTATATGGACAAAGTCAACTACTATGCAGTTCAATGGCTTGAGAGTAAAACTCAAGAGT 779
Query 773 TTGAGCCAACATATCTATATACCATGGAAAAGGGTTACTTCTTGCTGCCTGATGAAGCAA 832
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 TTGAGCCAACATATCTATATACCATGGAAAAGGGTTACTTTTTGCTGCCTGATGAAGCAA 839
Query 833 AATCACGGCATAACATTCGCACTGCAAATGTCAGCATATCGGCACGGCATCCCTGCTTTG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AATCACGGCATAACATTCGCACTGCAAATGTCAGCATATCGGCACGGCATCCCTGCTTTG 899
Query 893 GCAACAGGTGGCAGCAACTTCTTATAAACAGAGTTGTTGGATATGATACTATTATAATGA 952
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 900 GCAACAGGTGGCAGCAACTTCTTATAAACAGAGTTGTAGGATATGATACTATTATAATGA 959
Query 953 ATAGCTTACAGAACTCTGCTGGTCAAGGTTATCTATACAACTACCAGACAAGAGAATTTT 1012
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 960 ATAGCTTACAGAACTCTGCTGGTCAAGGTTATCTATACAACTTCCAGACAAGAGAGTTTT 1019
Query 1013 ACAATCTCAGTTACTCCCAAGAACTTCCTGACGGTTCTGCGCATTTCGGAGATTACTTGG 1072
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1020 ACAATCTCAGTTACTCCCAAGAACTTCCTGAAGGTTCTGCGCAATTCGGAGATTACTTGG 1079
Query 1073 TGACGAAATGTGGTGTCCTAATGATGTCACTTTTTGTGTTTTTCACAACCACAATGTCTG 1132
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGACGAAATGTGGTGTGCTAATGATGTCACTTTTTGTGTTTTTCACAACCACAATGTCTG 1139
Query 1133 TATCATTCACATTGCGAGAGACACAAACTCGCATGTTGAAGTTTACAGTGCAGCTTCAAC 1192
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1140 TGTCATTCACATTGCGAGAGACACAAACTCGCATGTTGAAGTTCACAGTGCAGCTTCAAC 1199
Query 1193 ACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACACGTGATCGAATCGC 1252
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1200 ACCATGCCCAGCATCGGTTACCAACATTTCAGTTGATCTTTGTACATGTGATCGAATCGC 1259
Query 1253 TTGTCTTTGTACCGATTATGATTGGGATTTTGTTCTTCCTGTTTGAGTTTTACGACGATC 1312
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1260 TTGTCTTTGTACCAATTATGATTGGGATTCTGTTCTTCCTGTTTGAGTTTTACGACGATC 1319
Query 1313 AGCTATTGGCTTTTATGGTTCTAGTTCTTGTCTGGCTTTGCGAATTATTCACCCTGATAA 1372
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1320 AGCTATTGGCTTTCATGGTTCTGGTTCTTGTCTGGCTATGCGAATTATTCACCCTGATAA 1379
Query 1373 GTGTCAGGACACCAATATCGATGAAGTTCTTCCCGCGTTTCTTCTTGCTGTACTTCTTGG 1432
||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 1380 GTGTCAGGACACCGATATCGATGAAGTTCTTCCCACGTTTCTTCTTGTTGTACTTCTTAG 1439
Query 1433 TGTTCCATATTTATTTCTTCTCATATGCATATGGTTTTTCTTATCTCGCCCTAATGACAA 1492
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1440 TGTTCCATATTTATTTCTTCTCGTATGCATATGGCTTTTCTTATCTCGCCCTAATGACAA 1499
Query 1493 CCGCTGCATTCATGCAACACTTAATTTTATACTTCTGGAACCGTTTTGAGGTACCAGCTC 1552
|||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 1500 CCGCTGCATTCATGCAACACCTAATTCTATACTTCTGGAACCGATTTGAGGTACCAGCTC 1559
Query 1553 TTCAGAGGTTCCTTCAAAGCCGACAGTCACACCTTCAGCAACACCCAGACTTTCACATCA 1612
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1560 TTCAGAGATTCCTTCAAAGCCGACAGTCACACCTCCAGCAACACCCAGACTTTCACATCA 1619
Query 1613 CTTCCTCAACAATCCTAGCATCAACTCTTCACATCACAAGGCTGAACAGAACAACAAGAA 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CTTCCTCAACAATCCTAGCATCAACTCTTCACATCACAAGGCTGAACAGAACAACAAGAA 1679
Query 1673 ACCGAACTCCGTCTGGTCCTAACCACACAACCCCAAACCAAAACACGGAAACAAGATCTT 1732
|||||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1680 ACCGAAGTCCATCTGGTCCAAACAACACAACCCCAAACCAAAACACGGAAACAAGAT-TT 1738
Query 1733 TTA-CAGCGGATGGAGGAGGTGTCGGGAATCCGGCACAATATCAAGAGCAGCAAGAAGAG 1791
| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1739 CCAACAGCGGATGGAGGAGGTGTCGGGAATCCAACACAACATCAAGAGCAGCAAGAAGAG 1798
Query 1792 AATGAAGCAAACACCGTTCCTGCAGAGCCTAACCCAC-AACAAGCAGGCGCAATGAGCTC 1850
|||| |||||||||| ||||||||||||||||| || ||||||| || || ||||||||
Sbjct 1799 AATGCAGCAAACACCATTCCTGCAGAGCCTAACA-ACCAACAAGCGGGTGCGATGAGCTC 1857
Query 1851 GTTCAGCTCGATGCTTCTATGGATTTTAGGCGGGGCTTCGTCAGAAGGACTTAACTCGTT 1910
|||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1858 GTTCAGTTCGATGCTACTATGGATTTTAGGCGGTGCTTCTTCAGAAGGACTTAACTCGTT 1917
Query 1911 TCTTTCGATGTTTAGAGATGTGAGAGATGAAGATGAAGCACAAGTGTTTGCAGATACTAG 1970
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1918 TCTTTCAATGTTTAGAGATGTGAGAGATGAAGAAGAAGCACAAGTGTTTGCAGATACT-G 1976
Query 1971 -TCCACCTCAAAACCCGCATCATGATCCTCTTTCAGTTGATTAAAGttttttttttcttt 2029
|||||||||||||||||||||||||||||||||||||||||||| | ||| | | | |
Sbjct 1977 CTCCACCTCAAAACCCGCATCATGATCCTCTTTCAGTTGATTAAA-TGTTTGCTGTATAT 2035
Query 2030 gtttgctgtatattttgtatttttggcctctggttttt-gttccttgtttgcttgtatAG 2088
|||| | || ||| | |||| ||||||| |||||| |||||||||||||||||||||
Sbjct 2036 -TTTG-T--AT-TTTC-T-TTTT-GGCCTCTAGTTTTTTGTTCCTTGTTTGCTTGTATAG 2087
Query 2089 TCACTGGCCAAAA 2101
|||||||||||||
Sbjct 2088 TCACTGGCCAAAA 2100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80560868175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5