BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61030.1
Length=2896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924940 jgi|Araly1|924940|scaffold_200501.1 3858 0.0
Ahg910852 jgi|Araly1|910852|Al_scaffold_0001_1106 924 0.0
> Ahg924940 jgi|Araly1|924940|scaffold_200501.1
Length=2576
Score = 3858 bits (2089), Expect = 0.0
Identities = 2417/2575 (94%), Gaps = 23/2575 (1%)
Strand=Plus/Plus
Query 63 CTTTCTCGGCGATGATGGAGCGAACTTACGGCCGTCGCAAGCCGGGGATGTTAAACGACG 122
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 13 CTTTCTAGGCGATGATGGAGCGAACTTACGGCCGTCGCAAACCGGGGATGTTAAACGACG 72
Query 123 ACGTCTCGCGGGCGGA--ACATATTTTTCCGTCTTCTTCATCTCCAGAACTCGAGCCAGT 180
|||| |||| |||||| || | ||||| |||| |||||||||||||||||||| ||| |
Sbjct 73 ACGTTTCGCAGGCGGAGTACCT-TTTTT-CGTCGTCTTCATCTCCAGAACTCGACCCACT 130
Query 181 TGATTTCTCAACTCAAGAATCATCTTGTGTCTGGAATTATTCTTCAAGATCCACTTTTTC 240
|||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||
Sbjct 131 TGATTTCTCAACTCAAGAGTCATCTTGTCTCTGGAATTATTCTTCAAGATCCAATTTTTC 190
Query 241 GGATAATGATTTTTCTGAGAAGAGGAACAAGAGACCCAGAAACGGTGGTGGAGGGTTTGG 300
||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 191 GGAGGATGATTTTTCTCAGAAGAGGGTTAAGAGACCCAGAAACGGTGGTGGAGGGTTTGG 250
Query 301 TTCGAATTCGACTTTGATGGAGGCTCAAGAGTTCGGCGAGTTAATTGAGAATGAGGACGA 360
|| ||||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||
Sbjct 251 TTTGAATTCGACTTTGATGGAGACGCAAGAATTCGGCGAGTTAATGGAGAATGAGGACGA 310
Query 361 AGTTAACTTCGCTCTTGATGGGTTGAAGAAAGGACATAAAGTTAGGATCAGAAGAGCTGC 420
||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 311 GGTTAACTTCGCTCTTGATGGGTTAAAGAAAGGTCATCAAGTTAGGATCAGAAGAGCTGC 370
Query 421 TTTGTCCTCTCTACTCTCGATTTGTGAATCTCAGTATCAGCGACGCTCTTTGAGAGCTTT 480
| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 371 TCTGTCTTCTCTACTCTCGATTTGCGAATCTCAATATCAGCGACGCTCTTTGAGAGCTTT 430
Query 481 AGGGATCTCACAGTCCATAATTGATGCGATTTTGGGTCTTTGCCTTGATGACATACCAAG 540
|||||||||||| |||||||| ||||| |||||||||||| | |||||||||||||||||
Sbjct 431 AGGGATCTCACAATCCATAATCGATGCAATTTTGGGTCTTAGTCTTGATGACATACCAAG 490
Query 541 CAATCTTGCTGCAGCTACCCTTTTCTTTGTGCTAACTACTGATGGTCAAGATGATCACTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CAATCTTGCTGCAGCTACCCTTTTCTTTGTGCTAACTACTGATGGTCAAGATGATCACTT 550
Query 601 TATGGAGTCACCCAACTCCATCAAGTTTTTGGTTAAGCTGTTGAGACCTGTGGTTTCTGC 660
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| ||
Sbjct 551 TATGGAGTCACCCAACTCTATCAAGTTTTTGATCAAGCTGTTGAGACCTGTGGTTTCCGC 610
Query 661 CAGTACTAAAGTAAAGCCGCGG---AATATAGGATCTAGGCTCTTATCAATAATCAAGGA 717
||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 611 CAGTACTAAAGGGAAGCCGCGGCGGAATATAGGATCTAGGCTCTTATCTGTAATCAAGGA 670
Query 718 TGTTGATGCAGCACGTGATGCAGCCAGTATGCATGATTTAAGCTCCTGTGATATAATTGA 777
||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| | ||
Sbjct 671 TGTTGATGCAGCACGTGATTCAGGCAGTATGCATGATTCAAGCTCCTGTGATATACTGGA 730
Query 778 CAGAGCTCAGGAAATTCTTGTTAATTGCAAGGAGTTGAGATTGATTGATAGCTATAAAAT 837
|||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 731 CAGAGCCCAGGAGATTCTTGTTAATTGCAAGGAGTTGAGATTGGTTGATGGCTATAAAAT 790
Query 838 CGAGAGGATGAGGCCTGAGCTAAGTACGAAATGGGTAGCTTTGTTGGTGATGGAGAAGGC 897
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 791 TGAGAGGATGAGGCCTGAGCTAAGTACGAAATTTGTAGCTTTGTTGGTGATGGAGAAGGC 850
Query 898 GTGCTTGTCCAAAATCTCTTTTGATGATACCTCTGGTACTGTGAAAAAATCTGGAGGAAT 957
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 851 GTGCTTGTCCAAAATCTCTTTTGATGATACCTCTGGTACTGTGAAAAAATTTGGAGGAAT 910
Query 958 GTTCAAGGAGAAACTGAGAGAACTTGGAGGACTTGATGCTGTCTTTGATGTTGTTATGGA 1017
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 911 GTTCAAGGAGAAACTGCGAGAACTTGGAGGACTTGATGCAGTCTTTGATGTTGTTATGGA 970
Query 1018 TTGCCACACTGTAATGGAGAGCTGGGTGACTCATGACACACTCTCTGTCGAGGATATAAA 1077
||| ||| |||||||||||||||||||| | | ||||||| |||||| ||||||||||||
Sbjct 971 TTGTCACTCTGTAATGGAGAGCTGGGTGGCACTTGACACAATCTCTGCCGAGGATATAAA 1030
Query 1078 AGATGACTTGAATAAGCAGAGTCTGATGTTACTTCTGAAATGTCTAAAAATCATGGAGAA 1137
|||||| ||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 1031 AGATGATTTGAATAAGCAGAATCTGATTTTGCTTCTGAAATGTCTAAAAATCATGGAGAA 1090
Query 1138 TGCTACATTCCTCAGCACAGAAAACCAGATTCATTTGCTCAGACTTAATAAAAGCATGGG 1197
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1091 TGCTACATTCCTCAGCACAGAAAACCAGATTCATTTGCTCAGATTTAATAAAAGCATGGG 1150
Query 1198 TTCTCATGAATCCCGACTGTCTTTCACAGAGCTCATGATAAGTGTCATCAAAATACTTTC 1257
|||||||| ||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 1151 TTCTCATGGATCCCGACTATCTTTCCCAGAGCTCATGATAAGCGTCATCAAAATACTTTC 1210
Query 1258 AGGTCTTCAGTTACGTGCTCACAGGAACGAAAAGCATCCTCACCCTCAGCCACATCTAGC 1317
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1211 AGGTCTTCAGTTACGTGCTCACAGGAACGAAAATCATCCTCACCCTCAGCCACATCTATC 1270
Query 1318 TTCTGCTGTTAAGAAGGGCTTTGTGACAATTATTAGTTCAGATACTTGCTCTACCACTGG 1377
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1271 TTCTGCTGTTAACAAGGACTTTGTGACAATTATTAGTTCAGATACTTGCTCTACCACTAG 1330
Query 1378 CTTTAGCTCCATAAAAAGTTTGAGCGTATCCAAGAGAAATCAGTCTGCATTCCTGGTAGG 1437
|| ||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||
Sbjct 1331 CTGTAGCTCCATAAAAAGTT-GTG--TATCCAAGAGAAATCAGTCTGCATTCCTGTTAGG 1387
Query 1438 TTGCTCAACGACACCAAAGCCGGGGTCTCAATCAAGTGTAATGTCGACAATTGATCACTG 1497
|||||||||||||||||| || |||||||||||||||||| |||| ||| |||||| |||
Sbjct 1388 TTGCTCAACGACACCAAAACCAGGGTCTCAATCAAGTGTATTGTCAACAGTTGATCCCTG 1447
Query 1498 CACGC-TGACGACTACAGCTGGTTCCAACACTGGGTCGTTTGCAGGCAGATTAGCCTCAT 1556
||||| | ||||||| |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1448 CACGCCT-ACGACTATAGCTGGTTCCAACACTGGGTCGTTCGCAGGCAGGTTAGCCTCAT 1506
Query 1557 TGGGTAGTGGCATTTCCAGAAGTAAAACAAGGACTAGCCAAACTAGAGAATCCAGTTGTA 1616
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1507 TGGGTAGTGGCATTTCCAGAAGTAATGCAAGGACTAGCCAAACTAGAGAATCCAGTTGTA 1566
Query 1617 AAAAAGTTGAAAACTTTGCATCCTTCGAGGATAGTCAAGATCCTTTTTCATTTGATTTAG 1676
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1567 AAAAAGTTGAAAACTTTTCATCCTTCGAGGATAGTCAAGATCCTTTTTCATTTGATTTGG 1626
Query 1677 AAGATTCAGGACCTTCCAGATGGGCAGTAG-----G-AAAGCAAAAGAAATCTAAAGGTC 1730
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||
Sbjct 1627 AAGATTCAGGACCTTCCAAATGGGCAGTAGTATTAGGAAAGCAAAAGAAATCTAAAGGTC 1686
Query 1731 AAAAGAGGAAGGGAAGCTACAGAGATAAGAAAGATGAACGCTCGCTTCAGCTCTTCTCGA 1790
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1687 AAAAGAGGAAGGGAAGCTACAGAGATAAAAAAGATGAACGCTCGCTTCAGCTCTTCTCGA 1746
Query 1791 GCCAGGAGGAATCAAACCATGGTTTAAATTCTCAGGAGGAATCAAGTGATAGAGATCACC 1850
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| ||
Sbjct 1747 GCCAGGAGGAATCAAACCATGGGTTAAATTCCCAGGAAGAATCAAGTGATAGAGATCGCC 1806
Query 1851 ATGTAACAGAGCAACCTTCTTTAACATATGACATTGATAAAGGATGTCTCTGTCTTTTAT 1910
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1807 ATGTAACAGAGCAACCTTCTTCAACATATGACATTGATAAAGGATGTCTCTGTCTTTTAT 1866
Query 1911 CTGATTGCCTTTTAACAGCCGTGAAGGTATTAATGAACCTAACAAATGGTAATTCTGTTG 1970
||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1867 CTGATTGTCTTTTAACAGCCGTGAAGGTATTAATGAACTTAACAAATGATAATTCTGTTG 1926
Query 1971 GTTGTCGGGAAGTTGCTGCCTGCGGAGGACTGGAGAGCATGGCTGAATTAGTTGTTGGAC 2030
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1927 GTTGTCGGGAAGTTGCTGCCTGCAGAGGACTGGAGAGCATGGCTGAATTAATTGTTGGAC 1986
Query 2031 ACTTTCCTTCCTTCACCAGATCTCCGCTTTACAGTCAGATGGAGTCCGGGACATGCCACC 2090
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1987 ACTTTCCTTCCTTCACCAGATCTCCGCTTTTCAGTCTGATGGAGTCCGGGACATGCCACC 2046
Query 2091 AGAAAGATAAACATCTCACAGACCAGGAATTAGATTTTCTTGTTGCCATCCTGGGGCTAC 2150
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2047 AGAAAGATAAACATCTCACAGACCAGGAATTAGATTTTCTTGTTGCCATCTTGGGGTTAC 2106
Query 2151 TGGTAAACTTGGTGGAGAAAAACGGAATAAACAGGTCAAGGCTCGCGGCAGCTAGTGTTC 2210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 TGGTAAACTTGGTGGAGAAAAACGGAATAAACAGGTCAAGGCTCGCGGCAGCTAGTGTTC 2166
Query 2211 CGATTACCAATCCAGAAGGGTTACAAGATAGTGAACAAGACATGATCCCTCTTTTATGTT 2270
|||| || |||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2167 CGATCACTAATCCAGAAGAGTTGCAAGATAGTGAACAAGACATGATTCCTCTTTTATGTT 2226
Query 2271 CAATCTTTCTCACCAATAAAGGATCCGCAGACACCAAAGATGAAACGAGTACTTTCACTT 2330
||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||
Sbjct 2227 CAATCTTTCTCACCAATCAAGGATCCGCAGACGCCAAAGATGATACAAGTACTTTCACTT 2286
Query 2331 TGGACGATGAAGAAGCTGTTTTAGAAAGCGAAAAGGAAGCGGAAAAGATGATCGTGGAGG 2390
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2287 TGGACGATGAAGAAGCTGTTTTAGAAAGCGAAAAGGAAGCGGAAAAGATGATTGTGGAGG 2346
Query 2391 CATATTCTGCCCTTCTACTTGCATTTCTATCCACAGAAAGTAGAAGTATACGAAATGCCA 2450
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2347 CATATTCTGCCCTCCTGCTCGCATTTCTATCCACAGAAAGTAGAAGTATACGAAATGCCA 2406
Query 2451 TCAGAGATTATCTCCCAAAACGCGACATGGCAATTCTGGTACCCGTGTTGGATAGATTTG 2510
||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2407 TCAGAGATTATCTACCAAAACGCAACATGGCAATTCTGGTACCGGTGTTGGATAGATTTT 2466
Query 2511 TGGCGTTTCATACAACACTGGACATGATTCCTCCAGAAACACATAAAGTGGTTATGGAAG 2570
|||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 2467 TGGCGTTTCATACAACACTGGACATGATTCCTCCGGAAACTCATAAAGCAGTTATGGAAG 2526
Query 2571 TTATCGAGTCGTGCAAATTGCCATAGAACGGAGGGaaaaaaaCAGGCGACATCTT 2625
|||| |||| ||||||||||||||||||| | |||||||||||||| |||||
Sbjct 2527 TTATTGAGTTGTGCAAATTGCCATAGAAC--A---AAAAAAACAGGCGAGATCTT 2576
> Ahg910852 jgi|Araly1|910852|Al_scaffold_0001_1106
Length=2622
Score = 924 bits (500), Expect = 0.0
Identities = 822/978 (84%), Gaps = 20/978 (2%)
Strand=Plus/Plus
Query 307 TTCGACTTTGATGGAGGCTCAAGAGTTCGGCGAGTTAATTGAGAATGAGGACGAAGTTAA 366
||| |||||| | |||||||| ||||| || ||| | || ||| ||||||| || |||||
Sbjct 279 TTCCACTTTGCTTGAGGCTCAGGAGTTTGGTGAGCTGATGGAGCATGAGGATGAGGTTAA 338
Query 367 CTTCGCTCTTGATGGGTTGAAGAAAGGACATAAAG-TTAGGATCAGAAGAGC-TGCTTTG 424
||| || |||||||| |||| ||||||||| | || | |||||||||||||| || |||
Sbjct 339 CTTTGCGCTTGATGGCTTGAGGAAAGGACA-ACAGCTGAGGATCAGAAGAGCAAGC-TTG 396
Query 425 TCCTCTCTACTCTCGATTTGTGAATCTCAGTATCAGCGACGCTCTTTGAGAGCTTTAGGG 484
||||||||| | |||||||| | |||||| | ||||| ||||| ||||| ||| ||||
Sbjct 397 TCCTCTCTATTGTCGATTTGCGCATCTCAACACCAGCGTCGCTCCTTGAGGGCTCAAGGG 456
Query 485 ATCTCACAGTCCATAATTGATGCGATTTTGGGTCTTTGCCTTGATGACATACCAAGCAAT 544
|| || || |||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 457 ATTTCCCAATCCATAATTGATGCGATTTTGGCTCTTAGCCTTGATGACATACCAAGCAAT 516
Query 545 CTTGCTGCAGCTACCCTTTTCTTTGTGCTAACTACTGATGGTCAAGATGATCACTTTATG 604
||||| ||||| ||||||||||||||| ||||| ||||||||||||| || |||||||||
Sbjct 517 CTTGCCGCAGCCACCCTTTTCTTTGTGTTAACTGCTGATGGTCAAGACGAGCACTTTATG 576
Query 605 GAGTCACCCAACTCCATCAAGTTTTTGGTTAAGCTGTTGAGACCTGTGGTT-TCTGCCAG 663
||||||||||| | |||||||||| || | |||||||||| ||||||| || || | ||
Sbjct 577 GAGTCACCCAAGTGCATCAAGTTTCTGATAAAGCTGTTGAAACCTGTGATTGTC-ACTAG 635
Query 664 TACTAAAGTAAAGCCGCGGAATATAGGATCTAGGCTCTTATCAATAATCAAGGATGTTGA 723
|| ||| ||||| || |||||||||| || |||||||||| || | |||||||||||
Sbjct 636 CACCGAAGGGAAGCCACGCAATATAGGATTTAAGCTCTTATCATTACTTAAGGATGTTGA 695
Query 724 TGCAGCACGTGATGCAGCCAGTATGCATGATTTAAGCTCCTGTGATATA-ATTGACAGAG 782
||||||||| ||| ||| | ||| ||||| ||||||| |||||||| || | ||||
Sbjct 696 TGCAGCACGGGATCCAGTGAAAATGAATGATCCAAGCTCCAGTGATATACTTTCA-AGAG 754
Query 783 CTCAGGAAATTCTTGTTAATTGCAAGGAGTTGAGATTGATTGATAGCTATAAAATC-GAG 841
||||||| |||||||||||||||| || ||| ||||| |||||||||||||| | ||
Sbjct 755 TTCAGGAACTTCTTGTTAATTGCAAAGAAATGAAATTGAATGATAGCTATAAAA-CTGAA 813
Query 842 AGGATGAGGCCTGAGCTAAGTACGAAATGGGTAGCTTTGTTGGTGATGGAGAAGGCGTGC 901
| | |||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 814 ACAACGAGGCCTGAGCTAAGTACGAAATGGGTAGCTTTGTTGGCCATGGAGAGGGCGTGC 873
Query 902 TTGTCCAAAATCTCTTTTGATGATACCTCTGGTACTGTGAA-AAAATCTGGA-GGAATGT 959
|| |||||||| |||||||||||||| |||||| ||||||| || | ||||| ||||| |
Sbjct 874 TTATCCAAAATTTCTTTTGATGATACTTCTGGTTCTGTGAAGAAGA-CTGGAGGGAAT-T 931
Query 960 TCAAGGAGAAACTGAGAGAACTTGGAGGACTTGATGCTGTCTTTGATGTTGTTATGGATT 1019
|||||||||||||| ||||||| |||||||||||||| ||| |||| |||||||||||||
Sbjct 932 TCAAGGAGAAACTGCGAGAACTAGGAGGACTTGATGCAGTCCTTGAGGTTGTTATGGATT 991
Query 1020 GCCACACTGTAATGGAGAGCTGGGT-GACTCATGACACACTCTCTGTCGAGGATATA-AA 1077
| ||| |||| |||||| | ||||| || | | || |||| || ||| |||| | | ||
Sbjct 992 GTCACGCTGTTATGGAGCGTTGGGTGGAAT-ACGATGCACTTTCCGTCCAGGA-AAAGAA 1049
Query 1078 AGATGACT-TGAATAAGCAGAGTCTGATGTTACTTCTGAAATGTCTAAAAATCATGGAGA 1136
|||| | | || |||| |||||| | ||||| |||||||| ||||| ||| |||||||||
Sbjct 1050 AGAT-AATCTGCATAAACAGAGTTTAATGTTGCTTCTGAAGTGTCTGAAACTCATGGAGA 1108
Query 1137 ATGCTACATTCCTCAGCACAGAAAACCAGATTCATTTGCTCAGACTTAATAAAAGCATGG 1196
|||||||||||||||||||||||||||||| |||||||||| || |||| ||| | |||
Sbjct 1109 ATGCTACATTCCTCAGCACAGAAAACCAGAATCATTTGCTCGGATTTAAGAAATGTTTGG 1168
Query 1197 GTTCTCATGAATCCCGACTGTCTTTCACAGAGCTCATGATAAGTGTCATCAAAATACTTT 1256
|||||||||| |||||| |||||||||||||||||| ||||||||||||||| || ||||
Sbjct 1169 GTTCTCATGATTCCCGAATGTCTTTCACAGAGCTCACGATAAGTGTCATCAAGATGCTTT 1228
Query 1257 CAGGTCTTCAGTTACGTG 1274
|||||||| | ||||||
Sbjct 1229 CAGGTCTTTACCTACGTG 1246
Score = 769 bits (416), Expect = 0.0
Identities = 1017/1298 (78%), Gaps = 77/1298 (6%)
Strand=Plus/Plus
Query 1338 TTGTGACAATTATTAGTTCAGATACTTGCTCTACCACTGGCTTTAGCTCCA-TAAAAAGT 1396
||||||| | || ||||||||||| ||||| ||| ||||| || ||||| | || |
Sbjct 1349 TTGTGAC-A--ATCAGTTCAGATACATGCTCGACCTTTGGCTCTATCTCCACGAGGAA-T 1404
Query 1397 TTGAGCGTAT-CCAAGAGAAATCAGTCTGCATTCC-TGGTAGGTTGCTCAACGACACCAA 1454
||| |||| |||| |||| ||| || | ||| | ||| || ||| | ||| |||
Sbjct 1405 GGGAGTGTATCCCAA-AGAAGTCAATCAATAATCCAT-TTAGATTTCTCGCCAACATCAA 1462
Query 1455 AGCCGGGGTCTCAATCAAGTGTAATGTC-GACAATTGATCACTGC-ACGCT-GACGACTA 1511
| |||| ||||||||||||| |||| | || ||| | || | ||| | | || |
Sbjct 1463 TGTCGGGTTCTCAATCAAGTG---TGTCGGGGAA-TGAGC-CTACTACG-TCAAAAACAA 1516
Query 1512 CAGCT-GGTTCCA--A-CACTGGGTCGTTTGCAGGCAGATTAGCCTCATTGGGTAGTGGC 1567
|| | ||||||| | | |||| || |||||||| |||||||| |||||||||| ||||
Sbjct 1517 GAG-TCGGTTCCACCATCTCTGGTTCATTTGCAGGGAGATTAGCGTCATTGGGTAATGGC 1575
Query 1568 ATTTCCAGAAGTAAAACAAGGACTAGCCAAACTAGAGAATCCAGT-TGTAAAA-AAGTTG 1625
||| ||||||||| |||||||||| ||| || ||||| ||| | ||||||| || |||
Sbjct 1576 ATTGCCAGAAGTACTTCAAGGACTAGTCAAGCTGGAGAA-CCAATCTGTAAAAGAA-TTG 1633
Query 1626 AAAACTTTGCATCCTTCGAGGATAGTC-AAGATCCTTTTTCATTTGATTTAGAAGATTC- 1683
| | ||||||||| ||| || || | ||||||||||| | |||||||| |||||| |
Sbjct 1634 GAGAGTTTGCATCCCCCGATGAAAG-CGAAGATCCTTTTGCGTTTGATTTGGAAGATGCT 1692
Query 1684 AGGACCTTCC-AGATGGGCAGTA--G---G-AAAGCAAAAGAAATCTAAAGGTCAAAAGA 1736
| ||||||| || ||||||||| | | ||| |||||||| |||| || ||||||||
Sbjct 1693 A-AACCTTCCAAG-TGGGCAGTAGTGTCCGTAAACCAAAAGAAGTCTAGAGCTCAAAAGA 1750
Query 1737 GGAAGGGAAGCTACAGAGATAAG-AAAGATGAACGCTCGCT-TCAGCTCTTCTCGAGCCA 1794
||| ||| |||||| | | ||| ||||||||| | | | | |||||| ||||| |||||
Sbjct 1751 AGAAAGGATGCTACAAACA-AAGTAAAGATGAAAGTTTG-TATCAGCTGTTCTCAAGCCA 1808
Query 1795 GGAGGAA---TCAAACCAT-GGTTTAAATTCTCAGGAGGAATCAAGTGATAGAGATCACC 1850
|| ||| ||||||||| || || ||||| || || ||||||||| | ||||| | |
Sbjct 1809 AGAAGAATCGTCAAACCATAGG-TTGAATTCCCAAGAAGAATCAAGTAACAGAGA-CTGC 1866
Query 1851 ATGTAACA--G-AGCAA-C--CTTCTT-TAACATATGACATTGATAAAGGATGTCTCTGT 1903
| || ||| | |||| | |||||| | ||| ||||||| ||| ||| ||||||||||
Sbjct 1867 A-GT-ACATCGCTGCAACCATCTTCTTGT-ACAAATGACATAGATGAAGAATGTCTCTGT 1923
Query 1904 CTTTTATCTGATTGCCTTTTAACAGCCGTGAAGGTATTAATGAACCTAACAAATGGTAAT 1963
|||||||||||||||||| |||||||||| ||||| || |||||| ||||||||| ||
Sbjct 1924 CTTTTATCTGATTGCCTTCTAACAGCCGTAAAGGTTTTGATGAACTTAACAAATGACAAC 1983
Query 1964 TCTGTTGGTTGTCGGGAAGTTGCTGCCTGCGGAGGACTGGAGAGCATGGCTGAATTAGTT 2023
|||| || ||||| |||||| || || |||| ||||| ||||||||||| ||| ||
Sbjct 1984 GCTGTCGGATGTCGACAAGTTGGTGGGTGTAGAGGGCTGGAAAGCATGGCTGAGTTAATT 2043
Query 2024 GTTGGACACTTTCCTTCCTTCACCAGATCTCCGCTTTACAGTCAGATGGA---GTCCGGG 2080
| |||||||||| || ||||||| ||||||||||| |||| ||||||| | | ||
Sbjct 2044 GCCAGACACTTTCCATCTTTCACCAAATCTCCGCTTTTCAGTGAGATGGAAAAGACAGG- 2102
Query 2081 A-CATGCCACCAGAA-A--GATAAACATCTCACAGACCAGGAATTAGATTTTCTTGTTGC 2136
| | | ||| ||||| | || |||||||| ||||| ||||| |||||||||||||||||
Sbjct 2103 ATCGTCCCATCAGAAGAAAGACAAACATCTTACAGATCAGGAGTTAGATTTTCTTGTTGC 2162
Query 2137 CATCCTGGGGCTA-CTGGTAAACTTGGTGGAGAAAAACGGAATAAACAGGTCAAGGCTCG 2195
|||| |||| || |||||||| ||||| |||||| ||||| | ||||| ||| |||| |
Sbjct 2163 CATCTTGGG-CTTGCTGGTAAATTTGGTTGAGAAAGACGGAGTGAACAGATCACGGCTTG 2221
Query 2196 CGGCAGCTAGTGTTCCGATTACCAATCCAGAAGGGTTACAAGATAGTGAACAAGACATGA 2255
| |||| |||||||| ||||| || ||||||||||| ||||| |||||||| || ||||
Sbjct 2222 CTTCAGCGAGTGTTCCTATTACAAAACCAGAAGGGTTGCAAGAGAGTGAACAGGAAATGA 2281
Query 2256 TCCCTCTTT-TATGTTCAATCTTTCTCACCAATAAAGGATCCGCAGACACCAAAGATGAA 2314
| ||| || ||||||||||||||||||||||| ||||||| ||||| |||||||| ||
Sbjct 2282 TTCCT-TTACTATGTTCAATCTTTCTCACCAATCAAGGATCAGCAGAGACCAAAGAAGAG 2340
Query 2315 ACGAGTACTTTCACTTTGGACGATGAAGAAGCTGTTTTAGAAAGCGAAAAGGAAGCGGAA 2374
|| | ||||||||| || || ||||| ||||||||||||||| ||||||| || ||||||
Sbjct 2341 ACAACTACTTTCACCTTAGATGATGAGGAAGCTGTTTTAGAAGGCGAAAAAGAGGCGGAA 2400
Query 2375 AAGATGATCGTGGAGGCATATTCTGCCCTTCTACTTGCATTTCTATCCACAGAAAGTAGA 2434
|||||||| ||||| ||||| ||||| || ||||| || ||||| || || ||||||| |
Sbjct 2401 AAGATGATTGTGGAAGCATACTCTGCTCTACTACTCGCCTTTCTTTCAACTGAAAGTATA 2460
Query 2435 AGTATACGAAA-TGCCATCAGAG-ATTATCTCCCAAAACGCGA-CATGGCAATTCTGGTA 2491
|||||||| || | |||||| || | |||||||| |||||| | | |||||||||| |||
Sbjct 2461 AGTATACGCAACT-CCATCA-AGGACTATCTCCCGAAACGCAATC-TGGCAATTCTTGTA 2517
Query 2492 CCCGTGTTGGATAGATTTGTGGCGTTTCATACAACACTGGACATGATTCCTCCAGAAACA 2551
|| || ||||| ||||||||||| ||||| | || ||| ||||||| ||||| || |||
Sbjct 2518 CCGGTTTTGGAAAGATTTGTGGCATTTCACATGACTCTGAACATGATCCCTCCGGAGACA 2577
Query 2552 CATAAAGTGGTTATGGAAGTTATCGAGTCGTGCAAATT 2589
||||||| || |||||||| || | || ||||||||
Sbjct 2578 CATAAAGCAGTGATGGAAGTGATTAAATCATGCAAATT 2615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109319003150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5