BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61040.1
Length=2353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475221 jgi|Araly1|475221|fgenesh2_kg.2__351__AT1G61040.1 3648 0.0
> Ahg475221 jgi|Araly1|475221|fgenesh2_kg.2__351__AT1G61040.1
Length=2306
Score = 3648 bits (1975), Expect = 0.0
Identities = 2213/2325 (95%), Gaps = 28/2325 (1%)
Strand=Plus/Plus
Query 21 TTCAGCATCTGCTTCCTCTCGACAATTTCGACATTACTCTTTCGTTTTTCACCCCTTCCT 80
|||| |||| ||||||||||||||| |||||||||| | ||| || || |||||
Sbjct 1 TTCATCATCAGCTTCCTCTCGACAA-TTCGACATTA--C--TCG---TT---CCTTTCCT 49
Query 81 TCTTCTCCTTTAGCCGCCCGTCGTCGATCTCTGCAACACTTTCCGACGATTTCTCCGTCT 140
||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 50 TCTCCTCCTTTAGCCGCCCGCCGTCGATCTCTGCAACACTTTCCGGCGATTTCTCCATCT 109
Query 141 GATCTCAAGTGACAGTGAAAACCATTTAAATTCGTTAC--TTGTGAGCCTCCTTAGAAGA 198
||||||||||| ||||| ||||||||||||||||| | |||||||| ||||| || |
Sbjct 110 CATCTCAAGTGATAGTGAGAACCATTTAAATTCGTT-CGTTTGTGAGCTTCCTTTGATG- 167
Query 199 TTATGGGTGATTTAGAGAACTTGCTTTTGGAAGCTGCTGGGAGAACAAATTCAGCAGGGA 258
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CTATGGGTGATTTAGAGAATTTGCTTTTGGAAGCTGCTGGGAGAACAAATTCAGCAGGGA 227
Query 259 GGAGTCGTCATCCTCCATCATCGAGGAGACGTGAGGGTTCTTACTCTGATGGTAGTAGCG 318
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 GGAGTCGCCATCCTCCATCATCGAGGAGACGTGAGGGTTCTTACTCTGATGGTAGTAGCG 287
Query 319 ATTCAAGGGATGATTCTGATGAAGATCGTGGCTATGCTAGTAGAAAACCCTCTGGGTCTC 378
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 288 ATTCAAGGGATGATTCTGATGAAGATCGCGGCTATGCTAGTAGGAAACCGTCTGGGTCTC 347
Query 379 AAGTTCCTTTGAAGAAGAGATTGGAGGCAGAGAGAGAAGATCGAGCTGCTCGAGTTGAAG 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 348 AAGTTCCTTTGAAGAAGAGATTGGAGGCAGAGAGAGAAGATCGAGCCGCTCGAGTTGAAG 407
Query 439 GTGGTTATGGTGATGGACCATCTGATCGTGAAGGTGACAGCAGCGAGGAGTCTGATTTTG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GTGGTTATGGTGATGGACCATCTGATCGTGAAGGTGACAGCAGCGAGGAGTCTGATTTTG 467
Query 499 GAGATGACCTTTACAAGAATGAGGAAGACAGGCAGAAGCTTGCTGGAATGACTGAGTTTC 558
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 468 GGGATGACCTTTACAAGAATGAGGAAGACCGGCAGAAGCTTGCTGGAATGACTGAGTTTC 527
Query 559 AGAGAGAGATGATTCTCTCTGAACGTGCTGATAAGAAAGGTGATAAGAACTTCACTGAGA 618
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 AGAGAGAGATGATTCTGGCTGAACGTGCTGATAAGAAAGGTGATAAGAACTTCACTGAGA 587
Query 619 AACTTAGGTCCAAGAGAGAAAGTGAGAAAACCCCTGTTTCTAAAAAGGAGACTCAGCCTC 678
||||||| || |||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 588 AACTTAGATCGAAGAGAGAAAATGAGAAAACCCCTGTTTCTAAAAAGGAGACCCAGCCTC 647
Query 679 TTCCGGCCTCTCGTGGTGTGCGTTCATCTGCTAGATCTGCAGACAGAGCCGCTGCTAAGG 738
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 648 TTCCGGCCTCTCGTGGTGTGCGTTCATCTGCTAGATCTGCAGACAGAGCCACTGCTAAGG 707
Query 739 ATGATGCCCTGAATGAATTGAGGGCGAAGCGTATGAAGCAGCAGGACCCAGCAGCTCTCA 798
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 708 ATGATGCCCTGAACGAATTGAGGGCAAAGCGTATGAAGCAGCAGGACCCAGCGGCTCTCA 767
Query 799 GGAAACTGAGAGATGCATCAAAAGGTGGTTCAGGTAGTCGAGATTTCTCATCAACGAAGA 858
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 GGAAACTGAGAGATGCATCAAAAGGTGGTTCAGGTAGTCGAGATTTCTCATCAATGAAGA 827
Query 859 GGAAACCGTTAGCTTCCTCCAATTTGAGTAGTTCCAGCCAAAGTGACAGTGATAGTAGGT 918
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 828 GGAAACCGTTAGCTTCCTCCAATTTGAGTAGCTCCAGCCAAAGTGACAGTGATAGTAGGT 887
Query 919 CTCAGAGTGATGATGAAGGCTCGAATGGAGGAATGCTAGACAGTGATGATGACAGGTCAG 978
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 888 CTCAGAGTGATGATGAAGGCTCGAATGCAGGAATGCTAGACAGTGATGATGACAGGTCAG 947
Query 979 ATGTGCCTACGTTTGAGGATGTTAAGGAAGTTACCATTAGACGGTCTAAGCTTGCCAAAT 1038
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 948 ATGTGCCTACGTTTGAGGATGTTAAGGAAATTACCATCAGACGGTCTAAGCTTGCCAAAT 1007
Query 1039 GGCTAATGGAGCCTTTCTTTGAAGAGCTTATAGTTGGGTGCTTTGTGAGGGTTGGGATCG 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GGCTAATGGAGCCTTTCTTTGAAGAGCTTATAGTTGGGTGCTTTGTGAGGGTTGGGATCG 1067
Query 1099 GAAGGTCAAAGAGTGGTCCAATTTACAGACTCTGCTGGGTGAAGAATGTTGATGCAACCG 1158
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1068 GAAGGTCAAAGAGTGGTCCAATTTACAGACTCTGCTGGGTGAAGAATGTAGATGCAACCG 1127
Query 1159 ATCCTGACAAGACCTACAAGCTAGAGAATAAAACTACACACAAGTACCTTAACGTCGTCT 1218
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 ATCCAGACAAGACTTACAAGCTAGAGAATAAAACTACACACAAGTACCTTAACGTCGTCT 1187
Query 1219 GGGGAAATGAAACCTCGGCGGCTCGATGGCAAATGGCTATGATCTCAGATGGTCATCCGC 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GGGGAAATGAAACCTCGGCGGCTCGATGGCAAATGGCTATGATCTCAGATGGTCATCCGC 1247
Query 1279 TGGAGGAAGAGTATAGGCAATGGATCAGAGAGGTTGAGCGAACAAATGGTCGCATGCCCA 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TGGAGGAAGAGTATAGGCAATGGATCAGAGAGGTTGAGCGAACAAATGGTCGCATGCCCA 1307
Query 1339 CAAAGCAAGATATATCGGAGAAGAAAGAAGCGATACAAAGAACAAACAGTTTTGTTTACT 1398
|||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 1308 CAAAGCAAGATATATCGGAGAAGAAAGAAGCGATCCAAAGAATAAACAGTTTCGTTTACT 1367
Query 1399 CTGCGGAAACTGTTAAACAGATGCTGCAGGAGAAAAAATCTGCGTCAGTCAGGCCAATGA 1458
||||||||||||| ||||||||| |||||||||||||||| || || |||||||||||||
Sbjct 1368 CTGCGGAAACTGTCAAACAGATGTTGCAGGAGAAAAAATCCGCCTCGGTCAGGCCAATGA 1427
Query 1459 ATGTTGCGGCCGAGAAAGATCGGCTTAGAAAAGAATTGGAAATTGCGCAGAGCAAAAACG 1518
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1428 ATGTTGCGGCCGAGAAAGATCGTCTTAGAAAAGAGTTGGAAATTGCGCAGAGCAAAAACG 1487
Query 1519 ATGAAGCAGGTGTAGAGAGGATCAAGTCGAAAATCAAACAGCTCGACGCTTCACGGAACA 1578
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1488 ATGAAGCAGGTGTAGAGAGGATCAAAACTAAAATCAAACAGCTCGACGCTTCACGGAACA 1547
Query 1579 AGAAAGGGGTAGATAAAAAAGCGCTTAAACTTGCTGAGATGAACAAGAAGAACAGAGCCG 1638
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1548 AGAAAGGGGTAGATAAGAAAGCGCTTAAACTTGCCGAGATGAACAAGAAGAACAGAGCCG 1607
Query 1639 AGAATTTCAAGAACGCATCTGAGGTAAAATCAATAA-CTGCTAGTCTCAAAGCCGGTGAA 1697
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1608 AGAATTTCAAGAACGCATCTGAGGTAAAATCAATAAGC-GCTAGTCTCAAAGCCGGTGAA 1666
Query 1698 GCAGGGTATGATCCGTTTTCAAGAAGATGGACCCGATCATCAAACTACTACAACGGGAAA 1757
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1667 GCTGGGTATGATCCGTTTTCAAGGAGATGGACCCGATCATCGAACTACTACAACGGGAAA 1726
Query 1758 AACAAGGGGAAAGATGGAGAAGAGAACGAGGCAGCGGTTGCAGCAGCGGTTGAGACCAAT 1817
|||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1727 AACAAGGGGAAAGACGGAGAAGAGAACGAGACAGCGGTTGCAGCAGCAGTTGAGACCAAT 1786
Query 1818 GGAGCAGATGCAGGAGCAGGTGTTGAAGCGACAGAAGCAGCTTTAGAAGCAGCTGCAGAG 1877
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 GGCGCAGATGCAGGAGCAGGTGTTGAAGCGACAGAAGCAGCTTTAGAAGCAGCTGCAGAG 1846
Query 1878 GCAGGAAAGCTAATAGACACAAGAGCTCCAATAGGTCAAGGAGCAGAACACAATCAGCTT 1937
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1847 GCAGGAAAGCTAATAGACACAAGAGCTCCAATCGGTCAAGGAGCAGAACACAACCAGCTT 1906
Query 1938 CATAACTTTGAATTGTCGTTATCGCTAACGGCTTTACAGAAGTACGGAGGACCTCAAGGA 1997
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1907 CATAACTTTGAATTGTCGTTATCCCTAACGGCGTTACAGAAGTACGGAGGACCTCAAGGA 1966
Query 1998 GTACAGAAAGCGTTCATGGCGAGGAAGCAACTGACCGAAGCAACTGTGGGATGCAGAGTC 2057
||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1967 GTACAGAAAGCATTCATGGCGAGGAAGCAAGTGACCGAAGCAACAGTGGGATGCAGAGTC 2026
Query 2058 GCAGAGAACGATGGCAAGAGACATGGCCTTACGTTAACTGTTAGTGATTACAAGAGAAGG 2117
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2027 GCAGAGAACGATGGCAAGAGACATGGCCTTACTTTAACTGTTAGTGATTACAAGAGAAGG 2086
Query 2118 AGAGGTCTTCTCTGATTTATTTGCAtttttttCAAGTCTCAGTGTTTCATTATCTTCTGA 2177
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |
Sbjct 2087 AGAGGTCTTCTCTGATTTCTG-G-ATTTTTTTCAAGTCTCAGTGTTTCATTATCTTCTCA 2144
Query 2178 AAACTGCTTCTTGGTTCTTCTTTTCTTCATATCTTTCTTTTGTACTCCACAAAATATGTT 2237
||||| |||||||||||||||| |||||| || |||||||||||||| |||||| |||
Sbjct 2145 AAACTACTTCTTGGTTCTTCTTCTCTTCACATTTTTCTTTTGTACTCT-CAAAAT--GTT 2201
Query 2238 TAGATCAGTTTGTTTTTT------CTTGAAATATTTTTGTACTCGTTTTTGTGTGAACTC 2291
||||||| |||||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct 2202 TAGATCAATTTGTTTTTTTTTTTTCTTGAAATATTTCTGTACTCGTTTTTGTGTGAATTC 2261
Query 2292 TCCTGATTAGTGTATGACTGCATGAAATTAGAAAATCAAGTCTTT 2336
||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 2262 TCCTGATTAGTGTATGACTACATGAAATTAGAAAATTAAATCTTT 2306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88636000115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5