BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61050.1
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924938 jgi|Araly1|924938|scaffold_200499.1 2117 0.0
> Ahg924938 jgi|Araly1|924938|scaffold_200499.1
Length=1356
Score = 2117 bits (1146), Expect = 0.0
Identities = 1271/1332 (95%), Gaps = 5/1332 (0%)
Strand=Plus/Plus
Query 1 ATGGAACAGAGCAGAAGAACAGAACAAGTTCTGTTAGTGCAGAGATTAAAAAGATTGATA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 26 ATGGAACAGAGCAGAAGAACAGAACAAGTTCTGTTAGTGCAGAGATTGAAAAGATTGATA 85
Query 61 GTCTCCTTTGTTTTTTGTCTTCCCATGtctcttcttggtctccttctcatgcttctctta 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 GTCTCTTTTGTTTTTTGTCTTCCCATGTCTCTTCTTGGTCTCCTTCTCATGCTTCTCTTA 145
Query 121 atctataacagcttctctgttttctctcttcATCTTGTTCCCAACC-AACCTATTCAATC 179
||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 146 ATCTACAACAGCTTCTCTGTCTTCTCTCTTCATCTTGTT-CCAACCTCACCTATTCAATC 204
Query 180 CACTCTTTCACCAACTCATCTTCAGATTCTTCATCACCAGACATCAACATCATCATCTGT 239
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 205 TACCCTTTCACCAACTCATCTTCAGATTCTTCATCATCAGACATCAACATCATCATCTCA 264
Query 240 GTCAGATTCTTCATTGTTACTTGTGGTGAAAGAAACCTCTTTAGGGTTCATACAGAAGCA 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GTCAGATTCTTCATTGTTGCTTGTGGTGAAAGAAACCTCTTTAGGGTTCATACAGAAGCA 324
Query 300 GAACGTTTCGTCGACGAGGATAGAGAAAAAGACGAGGAGATTCAAGAGAAGTACCGAGTT 359
|||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 325 GAACGTTTCGTCTACGAGGACAGAGAGAAAGACGAGGAGATTCAAGAGAAGAACCGAGTT 384
Query 360 AACTCCTGCGATAACACAGCGGTTACAAGTCAAATCAAGACAAAGATTCCAGACGAGGGT 419
|||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 385 AACTTCTGAGATAACACAGCGGTTACAAGTCAAATCAAGACAGAGATTTAAGACGAAGTT 444
Query 420 CAAGTCTTTGTTGTCCAAATCTTCTTGTGAGTCACTCTTCTTCATGACTTGGATCTCCTC 479
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAAGTCTTTCTTGTCCAAATCATCTTGTGAGTCACTCTTCTTCATGACTTGGATCTCCTC 504
Query 480 CATAGAATCTTTCGGTGATCGAGAGCGATTCACTATAGAAAGTCTCTTCAAATTTCACCC 539
||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 505 CATCGAATCTTTCGGTGATCGAGAGCGATTTACCATAGAGAGTCTCTTCAAATTTCACCC 564
Query 540 AAATGGCTGTTTGATCTTGGTCTCAAACTCATTTGACTGTGACAGAGGAACCTTAATCTT 599
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 565 AAACAGCTGTTTGATCTTGGTCTCAAACTCATTTGACTGTGACAGAGGAACCCTAATCTT 624
Query 600 GAAACCCTTTACAGATAAAGGGCTTAAAGTGCTTCCAATCAAACCTGATTTTGCTTACAT 659
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 625 GAAACCCTTTACAGATAAAGGGCTTAAAGTGCTTCCAATTAAACCTGATTTTGCATACAT 684
Query 660 CTTCAAAGATACATCAGCAGAGAAATGGTTTGAAAGATTGAAGAAAGGAACACTCAGTCC 719
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 685 CTTCAAAGATACATCAGCAGAGAAATGGTTTGAAAGATTGAAGAAAGGAACGTTTAGTCC 744
Query 720 AGGAGTGATTCCATTAGAGCAAAACCTCTCAAACCTTCTAAGATTAGTCCTGCTCTACAA 779
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 745 AGGAGTGATTCCATTAGAGCAAAACCTCTCTAACCTTCTAAGATTAGTCTTGCTCTACAA 804
Query 780 ATACGGCGGAATCTACTTAGACACAGACGTTATAATCCTCAAATCTCTCAGCAATCTCCA 839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 805 ATACGGCGGAATCTACTTAGACACAGACGTAATAATCCTCAAATCTCTCAGCAATCTCCA 864
Query 840 CAACGTAATCGGAGCACAAACAGTTGACCCGGTTACaaaaaaaTGGAGTAGGCTCAACAA 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 865 CAACGTAATCGGAGCACAAACAGTTGACCCGGTTACAAGAAAATGGAGTAGGCTCAACAA 924
Query 900 CGCGGTGCTCATCTTCGACAAGAACCATCCTTTGCTTAAAAGGTTCATCGACGAATTCTC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CGCGGTGCTCATCTTCGACAAGAACCATCCTTTGCTTAAAAGGTTCATCGACGAATTCTC 984
Query 960 AAGAACCTTTAACGGTAACAAATGGGGACACAACGGTCCCTACTTAGTGTCGAGAGTCAT 1019
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 985 AAGAACCTTCAACGGTAACAAATGGGGCCACAACGGTCCCTACTTAGTGTCGAGAGTCAT 1044
Query 1020 TACAAGAATCAAGATATCATCCTCTTCAGATTTGGGATTCTCTGTTCTTCCACCATCTGC 1079
| |||||||||| || || |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1045 TGCAAGAATCAACATTTCCTCCTCTTCGGATTTGGGATTCTCAGTTCTTCCACCATCTGC 1104
Query 1080 ATTTTATCCGGTGGACTGGACTAGAATCAAAGGATTCTACAGAGCGCCCACGAATGAGAG 1139
||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1105 ATTTTATCCGGTGGATTGGACTAGAATCAAAGGATTCTACAGAGCGCCGACGAGTGAGAC 1164
Query 1140 CGATGCT---TGGTTGCGGAAGAGGCTTACGCATTTACGCAAAAATACATTCGCTGTTCA 1196
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 CGAGGCTAACTGGTTGCGGAAGAGGCTTACGCATTTACGCAAAAATACATTCGCTGTTCA 1224
Query 1197 TCTTTGGAACAGAGAGAGTAAGAAACTCAGGATTGAAGAAGGAAGCATCATTCATCAACT 1256
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1225 TCTTTGGAACAGAGAGAGTAAGAAACTTAGGATTGAAGAAGGAAGCATCATTCATCAACT 1284
Query 1257 CATGTCTCATTCTTGCATCTTTTGTAACTCTTCTTCTTTACATTTAAGTTAAAACATGTA 1316
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 CATGTCTTATTCTTGCATCTTTTGTAACTCTTCTTCTTTACATTTAAGTTAAAACATGTA 1344
Query 1317 AAGTAAATTTCC 1328
||||| ||||||
Sbjct 1345 AAGTATATTTCC 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5