BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61060.1

Length=804
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923914 jgi|Araly1|923914|scaffold_105195.1                        311    6e-84
  Ahg922827 jgi|Araly1|922827|scaffold_104108.1                        167    1e-40


> Ahg923914 jgi|Araly1|923914|scaffold_105195.1
Length=1188

 Score =  311 bits (168),  Expect = 6e-84
 Identities = 312/379 (82%), Gaps = 19/379 (5%)
 Strand=Plus/Plus

Query  20   CAACCTCTGGGGACGACGAAACAGATTATTTTGATGC-TATCCATGTTGATCTCTTCA-C  77
            ||| ||||| |||  | ||||| || || |||||| |  |||| |||||||||| ||| |
Sbjct  41   CAATCTCTGTGGA--A-GAAACCGAATACTTTGAT-CGGATCCCTGTTGATCTCGTCATC  96

Query  78   TGCTAAGATCTTGTCGAAACTGCCAGTGAAGTCTATAGCTCAGTGTCGTTGCGTATCAAA  137
             | ||| |||||||||| | ||||  |||| |||||||||||||||||||||||||| ||
Sbjct  97   AG-TAATATCTTGTCGAGATTGCCTCTGAAATCTATAGCTCAGTGTCGTTGCGTATCTAA  155

Query  138  GCTATGGTCATCACAAATTCGTCGTCCATATTACAACATGTTGTTCCCGATCATGTCTCC  197
            ||| |||||||| | ||| || | |||| |||||||| ||||||||||||||| | | ||
Sbjct  156  GCTCTGGTCATCCCGAATCCGCCTTCCAAATTACAACCTGTTGTTCCCGATCAAGCCCCC  215

Query  198  AGCCCCACCGCGGATCCTTTTCACCATCGAAAATGCAGAAG-G-GTTGTTCTTCTACACT  255
             || |||||||||||| |||||||||| ||| ||| | ||| | ||||||| ||||| ||
Sbjct  216  GGCTCCACCGCGGATCGTTTTCACCATAGAATATG-A-AAGAGAGTTGTTCGTCTACTCT  273

Query  256  TCACCTCAGCCTCGA-AACCCTGATGAGAACACGTCTCTTGTAGCCACCCTTCATCATAG  314
            |||||||||| || | || |||| ||||||||||||||||||||||||||||||||||||
Sbjct  274  TCACCTCAGCTTC-ACAATCCTGGTGAGAACACGTCTCTTGTAGCCACCCTTCATCATAG  332

Query  315  GACAAGTGGAAACAG-TTT-ACT-TATAACAAGTCCTCCTGTTGGCGGATTGTTATGTCT  371
            |||| ||||  | || ||| | | |||| |  ||||||| |||||||||||| | |||| 
Sbjct  333  GACACGTGGGCA-AGGTTTCAGTGTATATC--GTCCTCCGGTTGGCGGATTGGTCTGTCG  389

Query  372  TGAACATGATCGAAAGAAT  390
            | ||||| |||||||||||
Sbjct  390  TCAACATTATCGAAAGAAT  408


> Ahg922827 jgi|Araly1|922827|scaffold_104108.1
Length=331

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 138/160 (86%), Gaps = 7/160 (4%)
 Strand=Plus/Plus

Query  63   TGTTGATCTCTTCACTGCTAAGATCTTGTCGAAACTGCCAGTGAAGTCTATAGCTCAGTG  122
            |||||||||| ||| | | || |||||||||||| |||| ||||||||||||||||||||
Sbjct  80   TGTTGATCTCGTCA-T-C-AATATCTTGTCGAAATTGCCGGTGAAGTCTATAGCTCAGTG  136

Query  123  TCGTTGCGTATCAAAGCTA-TGGTCATCACAA-ATTCGTCGTCCATATTACAACATGTTG  180
            |||||||||||| |||| | |||||||| ||  ||||| |||||| ||||||||||||||
Sbjct  137  TCGTTGCGTATCGAAGC-ACTGGTCATC-CATTATTCGCCGTCCAAATTACAACATGTTG  194

Query  181  TTCCCGATCATGTCTCCAGCCCCACCGCGGATCCTTTTCA  220
            ||||||| || |||||| ||  ||||| || |||||||||
Sbjct  195  TTCCCGACCAAGTCTCCGGCTACACCGAGGTTCCTTTTCA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29697752343


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5