BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61065.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924936 jgi|Araly1|924936|scaffold_200497.1 920 0.0
> Ahg924936 jgi|Araly1|924936|scaffold_200497.1
Length=583
Score = 920 bits (498), Expect = 0.0
Identities = 552/578 (96%), Gaps = 4/578 (1%)
Strand=Plus/Plus
Query 112 TTGCTTCGAATT-GAGCAGCTATGGCTTCCGTGTTGCTACTTCTTCTGGTGTTCGTGTTT 170
|||||| || || | ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1 TTGCTTTGATTTCG-GCAGCTATGTCTTCGGTGTTGCTACTTCTTCTGGTGTTCGTGTTT 59
Query 171 GATCTCATTGCTTTTGGTCTTGCTGTTGCTGCAGAGCAACGAAGAACCACCTGGCAAATT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GATCTCATTGCTTTTGGTCTTGCTGTTGCTGCAGAGCAACGAAGAACCACCTGGCAAATT 119
Query 231 TCTAGAGAATCAAGAGATTTGAGCTACTGTGTGTATGACAAGGACATAGCAACGGGTCTC 290
||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 120 TCTAGAGAATCAAAAGAATTAAGCTACTGTGTGTATGACAAGGATATAGCAACGGGTCTC 179
Query 291 GGAGTCGGTTCTTTCTTGGTCTTATTAGCGAGTCAGCTCTTAATAATGGTGGCGAGCCGA 350
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGAGTCAGTTCTTTCTTGGTTTTATTAGCGAGTCAGCTCTTAATAATGGTGGCGAGCCGA 239
Query 351 TGTTTATGCTGTGGAAGAGCATTGACACCAAGTG-GTTCAAGATCTTGGGCAATTTTTCT 409
||||| |||||||| ||||||||||||||||||| | || |||||||||||| |||||||
Sbjct 240 TGTTTGTGCTGTGGTAGAGCATTGACACCAAGTGCG-TCTAGATCTTGGGCAGTTTTTCT 298
Query 410 CTTCATCACCACCTGGGTTTTCTTCTTCATAGCACAAGTGTGTTTACTTGCTGGCTCTGT 469
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 CTTCATCACCACTTGGGTTTTCTTCTTCATAGCACAAGTGTGCTTACTTGCTGGCTCTGT 358
Query 470 ACGAAACGCTTACCATACAAAGTACCGTGTCTACTTTGGTAACACTTCCCCTTCTTGTCG 529
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 359 ACGAAACGCTTACCATACAAAGTACCGTGTCTACTTTGGGAACACTTCTCCTTCTTGTCG 418
Query 530 ATCACTGAGGAAAGGCGTGTTTGGGGCTGGAGCAGCATTCATAGTGCTCACGGGGATTGT 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCACTGAGGAAAGGCGTGTTTGGGGCTGGAGCAGCATTCATAGTGCTCACGGGGATTGT 478
Query 590 CTCCGAGCTTTACTATGTGACCCTTTCGAGGGCCAAAGACTTTCAACCTTCAAGAGATCC 649
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 479 CTCCGAGCTTTACTATGTGACCCTTTCGAGGGCCAAAGATTTTCAACCTCCAAGAGATCC 538
Query 650 CGGTATCCGAATGAGTAGCCTGTAGAACTTACACCTGC 687
||||||||||||||||||| | ||||||||||||||||
Sbjct 539 CGGTATCCGAATGAGTAGCATATAGAACTTACACCTGC 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5