BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61070.1 Length=590 Score E Sequences producing significant alignments: (Bits) Value Ahg475219 jgi|Araly1|475219|fgenesh2_kg.2__349__AT1G61070.1 630 3e-180 > Ahg475219 jgi|Araly1|475219|fgenesh2_kg.2__349__AT1G61070.1 Length=538 Score = 630 bits (341), Expect = 3e-180 Identities = 492/558 (88%), Gaps = 38/558 (7%) Strand=Plus/Plus Query 48 TTTTGTCCAAACTCTCTCTTAAAAAATGAAGGTCTCTCCTCGTTTGAACTCAGCCCTTCT 107 ||||||||||||||| ||||| | ||||||||||||| |||||||| |||||||||||| Sbjct 1 TTTTGTCCAAACTCTATCTTAGATAATGAAGGTCTCTAGTCGTTTGATCTCAGCCCTTCT 60 Query 108 CCTATTGTTCATGATCCTTGCCACAGTGATGGGTCTGGTCACGGTAGAGGCACGGACGTG 167 |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| Sbjct 61 CCTATTGTTCATGATCCTTGCCACAGGGATTGGTCCGGTCACGGTAGAGGCACGGACGTG 120 Query 168 TGAAACAAGTAGCAACTTGTTCAACGGACCATGTCTGAGCTCAAGCAATTGCGCTAATGT 227 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 121 TGAAACGAGTAGCAACTTGTTCAATGGACCATGTCTGAGCTCAAGCAATTGCGCCAATGT 180 Query 228 TTGCCACAATGAAGGTTTTTCAGATGGTGACTGCCGTGGATTCCGTCGTCGCTGTTTGTG 287 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || || Sbjct 181 TTGCCACAATGAAGGTTTTTCAGATGGTAACTGCCGTGGATTCCGTCGTCGCTGCTTCTG 240 Query 288 CACCAGACCTTGTTGATAGATGATCTAT-TTATATATA-AT-G--AATATATATTATCAA 342 ||||||||| |||||||||||||||||| ||||||||| || | |||||||||||| || Sbjct 241 CACCAGACCCTGTTGATAGATGATCTATCTTATATATATATAGTGAATATATATTATGAA 300 Query 343 AAACTTAATAATCTTTTCTATGTTTTCTATCTCTTTGATCATTTTCTGACTTTTATCCTA 402 ||||||||||||||||||||| || || || ||||||||||||||||| |||||| Sbjct 301 AAACTTAATAATCTTTTCTAT-----CT--CT-TT-GATCATTTTCTGACTTTGATCCTA 351 Query 403 GATATCGTTTGCCCTTGAAACAACAATAAGGAG-A--TCTAAAA-TCTTTAAGCCCTTTT 458 | |||||||| ||||||||||||||||||| | ||||||| ||||||| ||||||| Sbjct 352 --T--CGTTTGCCTTTGAAACAACAATAAGGAGGAGATCTAAAAATCTTTAAACCCTTTT 407 Query 459 GGCTTGAGCTTTC-------G-ATTATCTACCAAG-GTTAAACAATAGTGCCTTTTAGTT 509 || |||||||||| | ||||||||||| | |||||||| || ||||||||||| Sbjct 408 GGTTTGAGCTTTCTATTATAGTATTATCTACCA-GTGTTAAACAGTACTGCCTTTTAGTA 466 Query 510 ACCATTTTCAAATCTTATGACTTTTTATGTATCCAATTAGATTGGACTTACGCATCCAAT 569 | ||||||||| |||||||||| || |||||||||||||||||||||||||| ||| | Sbjct 467 AGCATTTTCAAGTCTTATGACTATT-ATGTATCCAATTAGATTGGACTTACGTATC---T 522 Query 570 ATAAATAAAACATGATTA 587 | || ||||||||||||| Sbjct 523 A-AA-TAAAACATGATTA 538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21596063374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5