BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61070.1
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475219 jgi|Araly1|475219|fgenesh2_kg.2__349__AT1G61070.1 630 3e-180
> Ahg475219 jgi|Araly1|475219|fgenesh2_kg.2__349__AT1G61070.1
Length=538
Score = 630 bits (341), Expect = 3e-180
Identities = 492/558 (88%), Gaps = 38/558 (7%)
Strand=Plus/Plus
Query 48 TTTTGTCCAAACTCTCTCTTAAAAAATGAAGGTCTCTCCTCGTTTGAACTCAGCCCTTCT 107
||||||||||||||| ||||| | ||||||||||||| |||||||| ||||||||||||
Sbjct 1 TTTTGTCCAAACTCTATCTTAGATAATGAAGGTCTCTAGTCGTTTGATCTCAGCCCTTCT 60
Query 108 CCTATTGTTCATGATCCTTGCCACAGTGATGGGTCTGGTCACGGTAGAGGCACGGACGTG 167
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 61 CCTATTGTTCATGATCCTTGCCACAGGGATTGGTCCGGTCACGGTAGAGGCACGGACGTG 120
Query 168 TGAAACAAGTAGCAACTTGTTCAACGGACCATGTCTGAGCTCAAGCAATTGCGCTAATGT 227
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 121 TGAAACGAGTAGCAACTTGTTCAATGGACCATGTCTGAGCTCAAGCAATTGCGCCAATGT 180
Query 228 TTGCCACAATGAAGGTTTTTCAGATGGTGACTGCCGTGGATTCCGTCGTCGCTGTTTGTG 287
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct 181 TTGCCACAATGAAGGTTTTTCAGATGGTAACTGCCGTGGATTCCGTCGTCGCTGCTTCTG 240
Query 288 CACCAGACCTTGTTGATAGATGATCTAT-TTATATATA-AT-G--AATATATATTATCAA 342
||||||||| |||||||||||||||||| ||||||||| || | |||||||||||| ||
Sbjct 241 CACCAGACCCTGTTGATAGATGATCTATCTTATATATATATAGTGAATATATATTATGAA 300
Query 343 AAACTTAATAATCTTTTCTATGTTTTCTATCTCTTTGATCATTTTCTGACTTTTATCCTA 402
||||||||||||||||||||| || || || ||||||||||||||||| ||||||
Sbjct 301 AAACTTAATAATCTTTTCTAT-----CT--CT-TT-GATCATTTTCTGACTTTGATCCTA 351
Query 403 GATATCGTTTGCCCTTGAAACAACAATAAGGAG-A--TCTAAAA-TCTTTAAGCCCTTTT 458
| |||||||| ||||||||||||||||||| | ||||||| ||||||| |||||||
Sbjct 352 --T--CGTTTGCCTTTGAAACAACAATAAGGAGGAGATCTAAAAATCTTTAAACCCTTTT 407
Query 459 GGCTTGAGCTTTC-------G-ATTATCTACCAAG-GTTAAACAATAGTGCCTTTTAGTT 509
|| |||||||||| | ||||||||||| | |||||||| || |||||||||||
Sbjct 408 GGTTTGAGCTTTCTATTATAGTATTATCTACCA-GTGTTAAACAGTACTGCCTTTTAGTA 466
Query 510 ACCATTTTCAAATCTTATGACTTTTTATGTATCCAATTAGATTGGACTTACGCATCCAAT 569
| ||||||||| |||||||||| || |||||||||||||||||||||||||| ||| |
Sbjct 467 AGCATTTTCAAGTCTTATGACTATT-ATGTATCCAATTAGATTGGACTTACGTATC---T 522
Query 570 ATAAATAAAACATGATTA 587
| || |||||||||||||
Sbjct 523 A-AA-TAAAACATGATTA 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21596063374
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5