BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61080.1
Length=2724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475218 jgi|Araly1|475218|fgenesh2_kg.2__348__AT1G61080.1 1993 0.0
Ahg471241 jgi|Araly1|471241|fgenesh2_kg.1__1195__AT1G11070.1 248 2e-64
Ahg929847 jgi|Araly1|929847|scaffold_302304.1 56.5 1e-06
> Ahg475218 jgi|Araly1|475218|fgenesh2_kg.2__348__AT1G61080.1
Length=2640
Score = 1993 bits (1079), Expect = 0.0
Identities = 1470/1650 (89%), Gaps = 62/1650 (4%)
Strand=Plus/Plus
Query 1 ATGTTGTTCGGTCGTAAATCATCAAGCAAGTTACAGCCTGTAAAAGGGCAAGCATCACCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTGTTCGGTCGTAAATCATCAAGCAAGTTACAGCCTGTAAAAGGGCAAGCATCGCCT 60
Query 61 AAAGTTAGCAAGAGTAGCAAGCAGGATGTTAAAA---------CTTCTTCTTCTTCACCT 111
||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 61 AAAGTTAGCAAGAATAGCAAGCAGGATGTTAAAACTTCTTCTTCTTCTTCTTCTTCACCT 120
Query 112 AAACCTTCTTCGTCACCTATACCGATTAGATCATCTAAGTCAATATTATCCGGGAGTTAC 171
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 121 AAACCTTCTTCTTCACCTATACCGATTAGATCATCCAAGTCAATATTATCCGGGAGCAAC 180
Query 172 TTAACATCATCAAGACGTGTTTCATCGCCTATAGGCAACCTCAAGAATATTTCTGTTAAA 231
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TTAACATCATCAAGACGTGGTTCATCGCCTATAGGCATCCTCAAGAATATTTCTGTTAAA 240
Query 232 GAAGCTAGGAGCCCCAAGACGAGCAGCTCGCCTAAATGGACAGGAAATTTTATTCTTATG 291
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 241 GAAGCTAAGAGCCCCAAGACGAGCAGCTCACCTAAATGGACAGGCAATTTTATTCTTATG 300
Query 292 GTCGAGCTTCGCAGGAAGATCTTTACCTTTAGAGACATCATTGATCTTTCTACCCTTGAT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GTCGAGCTTCGCAGGAAGATCTTTACCTTTAGAGACATCATTGATCTTTCTACTCTTGAT 360
Query 352 GGTTCTCCTTCCATAACCGATGTGCGTAAACCGCAACCTTATATCCTTATGGTGATGCAT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGTTCTCCTTCCATAACCGATGTGCGTAAACCGCAACCTTATATCCTTATGGTGATGCAT 420
Query 412 ACAATGAAAGATCTCCAGAAAATTTGTCCTGAGATCATTCATAGCTCCCATATCATGGAA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 ACAATGAAAGATCTCCAGAAAATTTGTCCTGAGATCATTCATAGCTCCCATATAATGGAA 480
Query 472 ATTAGACGTGCAAATGTAGATAAGGTTCTTGACCATTTCTTTAATGCTTTGAAATCCATT 531
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 ATTAGACGTGCAAATGTCGATAAGGTTCTTGACCATTTCTTTAGTGCTTTGAAATCCATT 540
Query 532 GGAGATTCATGGATTGATAACCCTGAATGGATAGCTAAATCCAAGTATTGGAGTAGCAGC 591
|||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 541 GGAGATTCGTGGATTGATAACCCCGAATGGATAACTAAATCCAAGTACTGGAGTAGCAGC 600
Query 592 GTCGGGAAGAATCAGTCTGATCG-CTTAGTGGAAAAAGTGTTAGCTGCATTAGATGGACT 650
||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||
Sbjct 601 GTCGGGAAGAATCAGTCCGATCGACT-AGTGGAAAAGGTGTTAGCTGCATTAGATGGACT 659
Query 651 GATTAAGATGTCCAAAGAGAGGTTTGATATGATGGAGATTGATgaagaagaagagaagaa 710
|||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct 660 GATTAAGATGTCGAAAGAAAGGTTCGATATGATGGAGATCGATGATGAAGAAGAGAAAAA 719
Query 711 agaGTCCACTAGTCCACAGACAGGTAAAACATCGAGCAGTCGAGTTTTATCGCCATCCGA 770
||| ||||| ||||||||||||| |||||| ||| | |||||||||||||||||||||||
Sbjct 720 AGAATCCACGAGTCCACAGACAGCTAAAACCTCGGGGAGTCGAGTTTTATCGCCATCCGA 779
Query 771 ATCATTCTCCGATAGCAAATCATCCTTTGGTAGCAGAAACTCGTTTTGCGGGTCACCGAC 830
|||||||||||||||||||||||| || | |||||||| |||||| |||||||||||||
Sbjct 780 ATCATTCTCCGATAGCAAATCATCATTCGATAGCAGAAGCTCGTTCTGCGGGTCACCGAT 839
Query 831 CACGCCAAGATCAGTTCTACCAGAATCGATGATGGGTTCACCGGGAAGAGTTGGAGACTT 890
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 840 CACGCCAAGATCAGTTCTACCAGAACCGATGATGGGTTCACCGGGAAGAGTTGGAGACTT 899
Query 891 TGCAAACTCTGCATCTCATCTTTTATGGAATATGAGAGTTCAAGCACTTGAAAAGCTTAG 950
||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 900 TGCAAACTCTGCATCACATCTTCTGTGGAATATGAGAGTTCAAGCACTTGAGAAGCTTAG 959
Query 951 TCCTATCGATGTTAAACGACTCGCTATCCACATCTTGTCACAGAAAGAAGCTCAGGAACC 1010
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 960 TCCTATCGATGTTAAGCGACTCGCTATCCACATCTTGTCACAGAAAGAAGCTCAGCAACC 1019
Query 1011 AAA-CGAAAGCAAT-GATGAAGATGTGATTAGTGTTGTTGAAGAGATCAAGCAGAAGAAG 1068
||| | |||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 AAATC-AAAGCAATTG-TGAAGATGAGATTAGTGTTGTTGAAGAGATCAAGCAGAAGAAG 1077
Query 1069 GATGAAATAGAGAGCATTGATGTGAAAATGGAGACAGAAGAATCTGTTAATCTTGATGAA 1128
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 GATGAGATAGAGAGCATTGATGTGAAAATGGAGACAGAAGAATCTGTTGTTCTTGATGAA 1137
Query 1129 GAATCCGTTGTTCTTAATGGCGAACAAGACACTATCATGAAGATCTCTTCATTGGAGTCA 1188
||| | || | | | | | |||||||||| ||||| ||||| |||
Sbjct 1138 GAA-C----------AA-G---AT-A---C--TGTCATGAAGATTTCTTCTTTGGATTCA 1176
Query 1189 ACATCTGAATCCAAACTCAATCATTCAGAAAAATATGAAAATTCATCACAACTTTTC-CC 1247
|||| ||||||||||||||||| ||||||||||| ||||||||| |||||| ||||| ||
Sbjct 1177 ACATTTGAATCCAAACTCAATCCTTCAGAAAAATCTGAAAATTCGTCACAA-TTTTCACC 1235
Query 1248 GCCACCGCCGcctcctcctcctcctcctccACTATCCTTTATAAAAACTGCTTCTTTACC 1307
||||||||||||||||||||||||||| || ||||| ||||| | |||| ||||||||
Sbjct 1236 ACCACCGCCGCCTCCTCCTCCTCCTCCTTCATTATCCACTATAACAGCTGCATCTTTACC 1295
Query 1308 T-CTT--CCATCACC-AC-C-TCCTACTCCGCC--AA-TTGCTGACATCGCAATATCAAT 1358
| || ||| |||| || | |||| |||| || || || ||||| | |||||||||||
Sbjct 1296 TTCTCAACCACCACCTACTCCTCCTCCTCCCCCGCAAATTACTGACGTGGCAATATCAAT 1355
Query 1359 GCCACCTCCTCCGCCACCACCACCGCCTCCTCCAGCAGTTATGCCTTTGAAACACTTTGC 1418
|||||||||||||||||||||||||||||| ||| ||||||||||||| ||| || |||
Sbjct 1356 GCCACCTCCTCCGCCACCACCACCGCCTCCACCAACAGTTATGCCTTTAAAAGGCTCTGC 1415
Query 1419 Tccaccaccaccaccacc---gcttccaccagcagttatgcctttgaaacactttgctcc 1475
|||||||||||||||||| || |||| || | ||||||||| ||| || ||||||
Sbjct 1416 TCCACCACCACCACCACCACCGCCGCCACTAGAAAATATGCCTTTAAAAGGCTCTGCTCC 1475
Query 1476 accaccaccGACTCCACCAGCATTTAAGCCTTTAAAAGGCTCTGCTCCACCACCACCGCC 1535
|||||| ||| | || || || || || ||| | |||| | ||||| ||
Sbjct 1476 ACCACCGCCGCCACCTCCTCCACTT---CC---AAA---CACTGCAGTGGCTCCACCTCC 1526
Query 1536 ACCTCCTCCACTTCCAACAACTATAGCGGctccacctccaccgcctcc---acctccaag 1592
||| ||||||| ||||| |||| || ||| ||||||||||| ||||| ||||||| |
Sbjct 1527 ACCGCCTCCACCTCCAAGAACTGCAGTGGCCCCACCTCCACCTCCTCCTCCACCTCCAGG 1586
Query 1593 agctgcagtggccccaccaccacctcctcc 1622
| || ||||||| |||||||| ||||||||
Sbjct 1587 AACTACAGTGGCACCACCACCGCCTCCTCC 1616
Score = 1753 bits (949), Expect = 0.0
Identities = 1174/1278 (92%), Gaps = 33/1278 (3%)
Strand=Plus/Plus
Query 1474 ccaccaccaccGACTCCACCAGCATTTAAGCCTTTAAAAGGCTCTGCT---CCACCACCA 1530
|||||||||||| |||||||| || ||| ||||||||||||||||||| |||||||||
Sbjct 1369 CCACCACCACCGCCTCCACCAACAGTTATGCCTTTAAAAGGCTCTGCTCCACCACCACCA 1428
Query 1531 CCGCCACCTCCTCCACTTCCAACA-A---C--T-ATA-G--CGGct---cca---cctcc 1574
|| ||||| || |||| | || | | | | | | | | ||| ||| || ||
Sbjct 1429 CCACCACCGCCGCCAC-TAGAAAATATGCCTTTAAAAGGCTCTGCTCCACCACCGCCGCC 1487
Query 1575 accgcctccacctcc-aagagctgcagtggccccaccaccacctcctccacctccaggaa 1633
||| ||||||| ||| || | |||||||||| ||||| ||||| |||||||||||| |||
Sbjct 1488 ACCTCCTCCACTTCCAAACA-CTGCAGTGGCTCCACCTCCACCGCCTCCACCTCCAAGAA 1546
Query 1634 ctgcagcgg---caccaccaccgcctcctccacctccaggaactca-agcggcaccacca 1689
|||||| || |||| ||||| ||||||||||||||||||||| | || ||||||||||
Sbjct 1547 CTGCAGTGGCCCCACCTCCACCTCCTCCTCCACCTCCAGGAACT-ACAGTGGCACCACCA 1605
Query 1690 ccgcctcctcctccacctATGCAAAACAGAGCACCATCTCCACCTCCAATGCCTATGGGA 1749
||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |
Sbjct 1606 CCGCCTCCTCCTCCACCGATGCAAAACAGAGCACCACCGCCACCTCCAATGCCTATGGCA 1665
Query 1750 AATAGTGGAAGTG-GTGGACCACCCCCTCCACCACCTCCTATGCCTCTAGCTAATGGAGC 1808
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1666 AATAGTGGAAGTGAG-GGACCACCACCTCCACCACCTCCTATGCCTCTAGCTAATGGAGC 1724
Query 1809 AACACCGCCACCGCCGCCACCTCCTATGGCTATGGCAAACGGAGCAGCAGGACCGCCTCC 1868
| |||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1725 AGCACCACCACCGCCACCACCTCCTATGGCTATGGCAAATGGAGCAGCAGGACCGCCTCC 1784
Query 1869 GCCACCACCTCGAATGGGTATGGCGAATGGAGCAGCTGGTCCACCACCGCCACCAGGAGC 1928
|||||||||||||||| ||||||||| || |||||||||||||| || |||||||||||
Sbjct 1785 ACCACCACCTCGAATGGATATGGCGAACGGTGCAGCTGGTCCACCGCCACCACCAGGAGC 1844
Query 1929 T-GCAAGAAGCTTGCGTCCCAAGAAAGCTGCCACAAAGCTGAAAAGGTCAACACAACTAG 1987
| || ||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct 1845 TGGC-AGAAGCTTGCGTCCCAAGAAAGCAGCTACAAAGCTGAAAAGGTCAACACAATTAG 1903
Query 1988 GAAACCTTTATAGAATCCTTAAAGGGAAAGTAGAAGGGCGTGATCCTAACGCAAAAACCG 2047
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1904 GAAACCTTTACAGAATCCTTAAAGGGAAAGTAGAAGGGCGTGATCCTAACGCCAAAACGG 1963
Query 2048 GCAGCGGAAGCGGAAGAAAAGCTGGAGCCGGAAGCGCTCCAGCTGGTGGAAAGCAAGGAA 2107
|| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1964 GCGGCGGAAGCGGAAGAAAAGCTGGAGTCGGAAGCGCCCCAGCTGGTGGAAAGCAAGGAA 2023
Query 2108 TGGCTGATGCTCTTGCTGAGATCACAAAGAAATCTGCATATTTTTTGCAAATACAAGCCG 2167
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2024 TGGCTGACGCTCTTGCTGAGATCACAAAGAAATCTGCATATTTTTTGCAAATACAAGCCG 2083
Query 2168 ATATTGCAAAGTACATGACGTCAATAAATGAGCTGAAGATTGAGATCACTAAGTTCCAGA 2227
|||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2084 ATATTGCAAAGTACATGAAGTCAATCAATGAGCTGAAGATTGAGATCACCAAGTTCCAGA 2143
Query 2228 CTAAAGACATGACTGAGCTTCTTAGCTTCCACCGTCGCGTCGAATCAGTTCTTGAAAACC 2287
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2144 CTAAAGACATGACTGAGCTTCTTAGCTTCCACCGTAGCGTCGAATCAGTTCTTGAAAACC 2203
Query 2288 TAACAGACGAGTCACAGGTTCTTGCCCGATGCGAAGGGTTTCCGCAGAAGAAACTCGAAG 2347
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2204 TAACAGATGAGTCACAGGTTCTTGCGCGATGCGAAGGGTTTCCGCAGAAGAAACTTGAAG 2263
Query 2348 CAATGAGAATGGCTGTTGCATTGTACACGAAACTACACGGTATGATCACCGAGCTACAGA 2407
||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2264 CAATGAGAATGGCAGTTGCATTGTACACGAAATTGCACGGTATGATCACCGAGCTACAGA 2323
Query 2408 ACATGAAAATAGAACCTCCTTTGAACCAGCTTCTTGATAAAGTAGAACGTTACTTCACCA 2467
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 2324 ACATGAAAATAGAACCTCCTTTGAATCAACTTCTTGATAAAGTAGAACGTTACTTCACAA 2383
Query 2468 AGATCAAAGAAACAATGGTTGATATCTCATCAAATTGCATGGAACTTGCATTGAAGGAAA 2527
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2384 AGATCAAAGAAACAATGGTTGATATATCATCAAATTGCATGGAACTTGCATTGAAGGAAA 2443
Query 2528 AGAGAGACGAAAAGCTCGTGTCCCCCGATGCAAAGCCGAGTTTGAAGAAGACAGTAGGAT 2587
|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2444 AGAGAGACGAAAAGCTTGTGTCCCCCGATGCGAAGCCGAGCTTGAAGAAGACAGTAGGAT 2503
Query 2588 CTGCTAAAATGCTTTGGCGGGCATTTCAGTTTGCATTCAAAGTCTACACATTTGCAGGAG 2647
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2504 CTGCTAAAATGCTTTGGAGGGCATTTCAGTTTGCATTCAAAGTCTACACATTTGCTGGAG 2563
Query 2648 GACACGACGATCGTGCTGATTCTCT-AACCAGAGAGTTGGCTCATGAGATCCAAACTGAT 2706
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2564 GACACGACGATCGCGCTGATTC-CTTAACCAGAGAGTTGGCTCATGAGATCCAAACTGAT 2622
Query 2707 TCTGATCCGAACCCATGA 2724
||||||| ||| ||||||
Sbjct 2623 TCTGATCAGAATCCATGA 2640
> Ahg471241 jgi|Araly1|471241|fgenesh2_kg.1__1195__AT1G11070.1
Length=2028
Score = 248 bits (134), Expect = 2e-64
Identities = 313/397 (79%), Gaps = 22/397 (6%)
Strand=Plus/Plus
Query 2077 GGAAGCGCTCCAGCTGGTGGAAAGCAAGGAATGGCTGATGCTCTTGCTGAGATCACAAAG 2136
|||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1030 GGAAGCGCTCCAGCCAGCGGAAAGCAAGGAATGGCTGATGCTCTTGCTGAGATAACAAAG 1089
Query 2137 AAATCTGCATATTTTTTGCAA-ATACAAGCCGATATTGCAAA-GTACATGACGT-CAATA 2193
|| ||| | |||||| | || ||| ||| ||| || | || ||| |||| || ||||
Sbjct 1090 AAGTCTCCTTATTTTCAG-AAGATAGAAGAGGATGTT-CGAATGTATATGA-GTTCAATC 1146
Query 2194 AATGAGCTGAAGATTGAGATCACTAAGTTCCAGA-CTAAAGACATGACTGAGCTTCTTAG 2252
|||||||| |||| || || || |||||| ||| | || ||||| || ||||||| |
Sbjct 1147 AATGAGCTTAAGACAGATATTACCAAGTTCAAGAAC-AAGGACATCACCGAGCTTCAGAA 1205
Query 2253 CTTCCACCGTCGCGTCGAATCAGTTCTTGA-AAACCTA-ACAGACGAGTCACAGGTTCTT 2310
|| |||| ||| || |||||||||||||| |||| || | ||| || ||||||||||
Sbjct 1206 ATTTCACCATCGTGTTGAATCAGTTCTTGAGAAAC-TAGA-AGATGAAACACAGGTTCTA 1263
Query 2311 GCCCGATGCGAAGGGTTTCCGCAGAAGAAACTCGAAGCAATGAGAATGGCTGTTGCATTG 2370
|| | || ||||| ||||| || ||||||||||||||||| |||||||||| ||||||
Sbjct 1264 GCAAGGTGTGAAGGATTTCCTCATAAGAAACTCGAAGCAATAAGAATGGCTGCTGCATTA 1323
Query 2371 TACACGAAA-CTACACGGTATGATCACCGAGCTA-CAGAACATGAAA-ATAGAACCTCCT 2427
||| | ||| || || |||||||||| |||||| | |||| || || ||||| ||||
Sbjct 1324 TACTC-AAAGCTGCAGGGTATGATCAAAGAGCTAAC-GAAC-TGGAAGATAGAGTCTCCC 1380
Query 2428 TTGAACCAGCTTCTT-GATAA-AGTAGAACGTTACTT 2462
||||||||| || || || | | |||||||||||
Sbjct 1381 GCCAACCAGCTT-TTCGACAAGACT-GAACGTTACTT 1415
> Ahg929847 jgi|Araly1|929847|scaffold_302304.1
Length=1507
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 1365 TCCTCCGCCACCACCACCGCCTCCTCCAGC 1394
||||||||||||||||||||||||||||||
Sbjct 212 TCCTCCGCCACCACCACCGCCTCCTCCAGC 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102767481010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5