BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61090.1
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907348 jgi|Araly1|907348|Al_scaffold_0002_429 281 4e-75
Ahg907346 jgi|Araly1|907346|Al_scaffold_0002_427 132 4e-30
> Ahg907348 jgi|Araly1|907348|Al_scaffold_0002_429
Length=831
Score = 281 bits (152), Expect = 4e-75
Identities = 251/296 (85%), Gaps = 17/296 (6%)
Strand=Plus/Plus
Query 149 ATGAGACCAGAAACTCGCGAGATCATTGA--GATGCAGCTGCTCCCGGCTATGAAGTTGG 206
|||||||||||||||| | |||| ||| | || | |||||||||| | |||||||||||
Sbjct 1 ATGAGACCAGAAACTCACAAGATTATT-ATTGA-GAAGCTGCTCCCAGTTATGAAGTTGG 58
Query 207 TTAA-GGAAAGGCTCGAGAGGGAAGTAGAGAAACAAA-GCATGGATGAGTTTATGTTCTG 264
|||| || || |||||| |||||||||| ||| ||| ||| |||||||||| |||||||
Sbjct 59 TTAAGGGCAA-CCTCGAGGGGGAAGTAGA-AAAAAAAGGCACGGATGAGTTTGTGTTCTG 116
Query 265 CTTCGAAAACTGCTACACTGAGAAGGAAACTGAGATGCACGTGACCC-GCAAG-TTCCCT 322
||||||||||||||||||||| |||||||||||| ||||||||||| | ||| |||| |
Sbjct 117 TTTCGAAAACTGCTACACTGAGGAGGAAACTGAGAAGCACGTGACCCAG-AAGATTCC-T 174
Query 323 TCTTTAAAACAATCGGATGTGGGAA-TTGGCTTTCAGACGTTTATAGGCTTGATCGATAA 381
||||||||| ||||||||||| ||| || || |||| |||| || | ||||||||||
Sbjct 175 TCTTTAAAAGAATCGGATGTGAGAAATTT-CTATCAGTTGTTTCTAACCATGATCGATAA 233
Query 382 AGAGTCCTCAAGAGAGGCGTATCTCAAGGATGCTGAAGATTGTGCTAATGTAAGAA 437
||| | |||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 234 AGA-T--TCAAAAGAGGCGTATCTCAAGGATGCTGAAGATTGTGCTAGTGAAAGAA 286
Score = 261 bits (141), Expect = 5e-69
Identities = 287/351 (82%), Gaps = 35/351 (10%)
Strand=Plus/Plus
Query 86 TTTACTTACAATCCTT-GTTTTGTT---CTCTTTCCTATACTTTTCTG--TGTATTTCTT 139
||| |||||||| ||| |||| || ||||| || || | |||||| ||| ||||||
Sbjct 384 TTT-CTTACAAT-CTTCGTTTCATTCCCCTCTTACCCATTCATTTCTGTCTGTTTTTCTT 441
Query 140 -AGATCAAAGATGAGACCAGAAACTCGCGAGATCATTGAGATGCAGCTGCTCCCGGCTAT 198
| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 442 CA-ATCAAAGATGAGACCAGAAACTCGCGAGGTTATTGAGATGCAGCTGCTCCCGGCTAT 500
Query 199 GAAGTTGGTTAAGG-AAAGGCTCGAGAGGGAAGTAGAGAAACAAAGCATGGATGAGTTTA 257
||| || ||| | || || | | | |||| ||||||||||| ||||||||||
Sbjct 501 GAA---GG---AGGCTACGG-TC-A-A--G--CTAGAAAAACAAAGCATTGATGAGTTTA 547
Query 258 TGTTCTGCTTCGAAAACTGCTAC-ACTGAGAAGGAAACTGAGATGCACGTGACCC-GCAA 315
||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||| | ||
Sbjct 548 TGTTCTGTTTCAAAAACTGCTACGA-TGAGAAGGAAACTGAGATGCACGTGACCCAG-AA 605
Query 316 G-TTCCCTTCTTTAAAACAATCGGATGTGGGAA-TTGGCTTTCAGACGTTTATAGGCTTG 373
| |||| |||||| ||| ||||||||||| ||| || || |||| | || || | ||
Sbjct 606 GATTCC-TTCTTTTAAAGAATCGGATGTGAGAAATTT-CTATCAGTTGATTCTAACCATG 663
Query 374 ATCGATAAAGAGTCCTCAAGAGAGGCGTATCTCAAGGATGCTGAAGATTGT 424
|||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 664 ATCGATAAAGAG-CC--AAGAGAGGCGTATCTCAAGGATGCTAAAGATTGT 711
> Ahg907346 jgi|Araly1|907346|Al_scaffold_0002_427
Length=417
Score = 132 bits (71), Expect = 4e-30
Identities = 228/300 (76%), Gaps = 26/300 (9%)
Strand=Plus/Plus
Query 148 GATGAGACCAGAAACTCGCGAGATCATTGAGATGCAGCTGCTCCCGGCTATGAAGTTGGT 207
||||||||||||||||| | || | ||| || || | |||| | ||||||||| |||
Sbjct 42 GATGAGACCAGAAACTCTCAAGGTTATTCAG---CAACAGCTCACAGCTATGAAGGCGGT 98
Query 208 TAAGGAAAGGCTCGAGAGG--GAAGTAG-AGAAACAAAGCATGGATGAGTTTATGTTCTG 264
| |||||| || ||| | |||| || | ||| ||| ||||||||||| ||||||||
Sbjct 99 TCAGGAAA--CTAAAGACGACGAAGAAGTAAAAA-AAATCATGGATGAGTACATGTTCTG 155
Query 265 CTTC-GAAAACTGCTACACTGAGAAGGAAACTGAGA-TGCACGTGACCC-GCAAG-TTCC 320
|| |||| ||| ||||||||| |||| || || | ||| | |||| | ||| ||||
Sbjct 156 TTTTAGAAA-CTGTTACACTGAGGCTGAAATTGTGAAT-CACATCACCCAG-AAGATTCC 212
Query 321 CTTCTTTAAAACAAT-CGGATGTGGGAA-TTGGCTTTCAGACG-TTTATAGGCTTGATCG 377
||||| | || | |||| ||| ||| || || |||| | ||||||| | ||||||
Sbjct 213 -TTCTTCAGTACC-TGCGGAAGTGAGAAATTT-CTGTCAGG-GATTTATAGCCGTGATCG 268
Query 378 ATAAAGAGTCCTCAAGAGAGGCGTATCTCAAGGATGCTGAAGATTGTGCTAATGTAAGAA 437
||||||| | | |||||| | ||||||||||||||||||||||||||||| || |||||
Sbjct 269 ATAAAGATT--T-AAGAGACGTGTATCTCAAGGATGCTGAAGATTGTGCTAGTGAAAGAA 325
Score = 87.9 bits (47), Expect = 9e-17
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 450 GTCAAGGTGAGGCCAGTACATCTCACAAATGTGAACCTAACTGCAACAAA 499
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 365 GTCAAGGTGAGGCCAGTACATCTCACAAATGTGAACCTAACTGCGACAAA 414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26457304398
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5