BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61095.1
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907346 jgi|Araly1|907346|Al_scaffold_0002_427 337 8e-92
Ahg907348 jgi|Araly1|907348|Al_scaffold_0002_429 187 8e-47
Ahg924929 jgi|Araly1|924929|scaffold_200490.1 165 4e-40
> Ahg907346 jgi|Araly1|907346|Al_scaffold_0002_427
Length=417
Score = 337 bits (182), Expect = 8e-92
Identities = 326/393 (83%), Gaps = 20/393 (5%)
Strand=Plus/Plus
Query 125 TTCAATCAAAGATGAGACCAGAAACTCTCGCGGTTATTCAGAAACAGCTCACAGAAATGA 184
|||| ||| ||||||||||||||||||| |||||||||| |||||||||||| ||||
Sbjct 32 TTCACTCATCGATGAGACCAGAAACTCTCAAGGTTATTCAGCAACAGCTCACAGCTATGA 91
Query 185 AAGC-GTCTCAGAGAAA-T-ATGACCGACCACGAAGTAATACGAGCCATGAACGAGTTCA 241
| || || |||| |||| | | || |||| | ||||||| | | |||| | |||| ||
Sbjct 92 AGGCGGT-TCAG-GAAACTAAAGA-CGACGAAGAAGTAAAAAAAATCATGGATGAGTACA 148
Query 242 TGTTCTG-TTTCGAAAACTGTTACACAGAGAATGAAACTGTGAATCATAT-AGTTCAGAA 299
||||||| ||| | |||||||||||| ||| ||||| ||||||||| || | |||||
Sbjct 149 TGTTCTGTTTTAG-AAACTGTTACACTGAGGCTGAAATTGTGAATCACATCA-CCCAGAA 206
Query 300 GTTTCCTTCTTAC-GTACC--CAAG-AGTGTAAGAAGTTTCTTTCA-GAAGTCCATAGCC 354
| ||||||||| | ||||| | | |||| |||| ||||| ||| | | | ||||||
Sbjct 207 GATTCCTTCTT-CAGTACCTGC-GGAAGTG--AGAAATTTCTGTCAGGGA-TTTATAGCC 261
Query 355 TTGATCGATGAAGAGTCAAGAGAGGCGTATCTTACGGATGCTGAAGAATGTGCTAGTGTA 414
|||||||| |||| | |||||| | |||||| | |||||||||||| |||||||||| |
Sbjct 262 GTGATCGATAAAGATTTAAGAGACGTGTATCTCAAGGATGCTGAAGATTGTGCTAGTGAA 321
Query 415 AGAAGGAGTCAGGCTCGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGGTGAGGCCAGT 474
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 AGAATGAGTCAGGCTCGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGGTGAGGCCAGT 381
Query 475 ACATCTCACAAATGTGAACCTAACTGCAACAAA 507
||||||||||||||||||||||||||| |||||
Sbjct 382 ACATCTCACAAATGTGAACCTAACTGCGACAAA 414
> Ahg907348 jgi|Araly1|907348|Al_scaffold_0002_429
Length=831
Score = 187 bits (101), Expect = 8e-47
Identities = 229/288 (80%), Gaps = 20/288 (7%)
Strand=Plus/Plus
Query 235 GAGTTCATGTTCTGTTTCGAAAACTGTTAC-ACAGAGAATGAAACTGTGAAT-CATATAG 292
||||| |||||||||||| ||||||| ||| | ||||| ||||||| || | || | |
Sbjct 541 GAGTTTATGTTCTGTTTCAAAAACTGCTACGAT-GAGAAGGAAACTGAGA-TGCACGT-G 597
Query 293 TTC-AGAAGTTTCCTTCTTACGTACCCAA--G-AGTGTAAGAAGTTTCTTTCAGAAG-TC 347
| ||||| ||||||||| || || | | ||| |||| ||||| |||| | |
Sbjct 598 ACCCAGAAGATTCCTTCTTT--TAAAGAATCGGA-TGTGAGAAATTTCTATCAGTTGATT 654
Query 348 CATAGCCTTGATCGATGAAGAGTCAAGAGAGGCGTATCTTACGGATGCTGAAGAATGTGC 407
| || || |||||||| ||||| |||||||||||||||| | ||||||| |||| ||| |
Sbjct 655 C-TAACCATGATCGATAAAGAGCCAAGAGAGGCGTATCTCAAGGATGCTAAAGATTGTTC 713
Query 408 TAGTGT-A-AGAAGGAGTCAGGCT-CGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGG 464
|| | | ||||||| || | | ||||||| ||||||| |||||||||| ||||||||
Sbjct 714 --GTTTCATAGAAGGAATCTGA-TGCGTGATAATTCTGAGAAAGCTAAGAGCAGTCAAGG 770
Query 465 TGAGGCCAGTACATCTCACAAATGTGAACCTAACTGCAACAAACATTA 512
||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 771 TGAGGCCAGCACATCTCACAAATGCGAACCTAACTGCAACAAACATTA 818
> Ahg924929 jgi|Araly1|924929|scaffold_200490.1
Length=445
Score = 165 bits (89), Expect = 4e-40
Identities = 222/282 (79%), Gaps = 26/282 (9%)
Strand=Plus/Plus
Query 235 GAGTTCATGTTCTGTTTCGA-AAACTGTTACACAGAGAATGAAACTGTGAATCATATAGT 293
|||| ||||||||||||| | |||||| ||||| ||| |||||||||||||||| || |
Sbjct 123 GAGTACATGTTCTGTTTC-AGAAACTGCTACACTGAGGATGAAACTGTGAATCACAT-GA 180
Query 294 TC-AGAAGTTTCCTTCTTAC-GTACC--CAAGAGTGTAAG-AAGTTTCTTTCAGAA--GT 346
| | ||||||||||||| | ||||| | || ||| || ||| |||||| | || ||
Sbjct 181 GCAATAAGTTTCCTTCTT-CAGTACCTGC-GGA-TGTGAGAAAG-TTCTTT-A-AATTGT 234
Query 347 CCATAGCCTTGATC-GATGAAGAGTCAAGAGAGGCGTATCTTACGGATGCTGAAGAATGT 405
|| | || | | | ||||| ||| | |||||||||| | ||| ||||||| || |
Sbjct 235 TGTTATCGGCGA-CAGGTAAAGAGCCAAAAAAGGCGTATCTCAAGGACGCTGAAG-AT-T 291
Query 406 GCTAGTGT-A-AGAAGGAGTCAGGCT-CGTGATACTTCTGAGGAAGCTAAGAGA-AGTCA 461
| | || | | ||||||| | | | ||||||||||||||||||||||||| | |||||
Sbjct 292 GTTCGTTTCATAGAAGGAAAC-TGATGCGTGATACTTCTGAGGAAGCTAAGA-ACAGTCA 349
Query 462 AGGTGAGGCCAGTACATCTCACAAATGTGAACCTAACTGCAA 503
||||||||||||||||||||||| |||| |||||||||||||
Sbjct 350 AGGTGAGGCCAGTACATCTCACATATGTAAACCTAACTGCAA 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25732968975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5