BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61097.1
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924929 jgi|Araly1|924929|scaffold_200490.1 431 3e-120
Ahg907346 jgi|Araly1|907346|Al_scaffold_0002_427 209 2e-53
> Ahg924929 jgi|Araly1|924929|scaffold_200490.1
Length=445
Score = 431 bits (233), Expect = 3e-120
Identities = 363/423 (86%), Gaps = 19/423 (4%)
Strand=Plus/Plus
Query 137 AATTCTCGAGGCAATTCAGAAAA-AGCTCAAGGCTATGGAGGCGGCTAATAGAATTCCGG 195
|||||||||||| |||||||||| | |||||||||||||||||||||||| ||||| |
Sbjct 35 AATTCTCGAGGCTATTCAGAAAATA-CTCAAGGCTATGGAGGCGGCTAATGGAATTGC-T 92
Query 196 GA-GACAAAGATGAAAAACAATTCGTT-GATGAGTACATGTTCTGTTTCAGAAACAGCTA 253
|| |||||| |||||||| ||| || ||||||||||||||||||||||||||| ||||
Sbjct 93 GACGACAAATATGAAAAAGGGTTC-TTCGATGAGTACATGTTCTGTTTCAGAAACTGCTA 151
Query 254 CACTGAGAATGAAACTGTGTTTCACATGAAAAATAAGTTTCCGTCTTTAGTACCTGCGGA 313
||||||| ||||||||||| |||||||| ||||||||||| |||| |||| | |
Sbjct 152 CACTGAGGATGAAACTGTGAATCACATGAGCAATAAGTTTCCTTCTTCAGTA-C--C--- 205
Query 314 TGCGGATGTGAGAAAGTTCTTTAAATTGTTGATATCAGCGACCGGTAAAGAGTCAAAAAA 373
||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||
Sbjct 206 TGCGGATGTGAGAAAGTTCTTTAAATTGTTGTTATCGGCGACAGGTAAAGAGCCAAAAAA 265
Query 374 GGCGTATCTCAAGGATGCTGAAGCTTGTTGGTCTCGA-AGATGTAGTCAGGGGCGTGACA 432
||||||||||||||| ||||||| ||||| || || | ||| | | | | |||||| |
Sbjct 266 GGCGTATCTCAAGGACGCTGAAGATTGTTCGTTTC-ATAGAAGGAAACTGATGCGTGATA 324
Query 433 CTTCTGAGGAAGCTAAGAACAGTCAAGGTGAGGCCAGTACATCTCACAAATGTGAACGTA 492
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 325 CTTCTGAGGAAGCTAAGAACAGTCAAGGTGAGGCCAGTACATCTCACATATGTAAACCTA 384
Query 493 ACTGCAAGAAACGTTATCCCAAAATTCCGAAAA-ATTAATACTT-TGAT-CAAAGGATAC 549
|||||||||| |||||||||||| ||| |||| ||||||| | | || ||||| ||||
Sbjct 385 ACTGCAAGAAGCGTTATCCCAAA-TTCAAAAAACATTAATAGTACT-ATTCAAAGAATAC 442
Query 550 GTT 552
|||
Sbjct 443 GTT 445
> Ahg907346 jgi|Araly1|907346|Al_scaffold_0002_427
Length=417
Score = 209 bits (113), Expect = 2e-53
Identities = 304/393 (77%), Gaps = 26/393 (7%)
Strand=Plus/Plus
Query 115 TTCAATCAAAGATGA-ATCCTGAAATTCTCGAGGCAATTCAGAAAAAGCTCA-AGGCTAT 172
|||| ||| ||||| | || |||| |||| ||| |||||| || |||||| | |||||
Sbjct 32 TTCACTCATCGATGAGA-CCAGAAACTCTCAAGGTTATTCAGCAACAGCTCACA-GCTAT 89
Query 173 GGAGGCGGCT-AATAGAATTCCGGGA-GACAAAGATG-AAAAACAATTCGTTGATGAGTA 229
| |||||| | | | || | || ||| |||| | ||||| || || | ||||||||
Sbjct 90 GAAGGCGGTTCAGGA-AACT-AAAGACGACGAAGAAGTAAAAA-AAATCATGGATGAGTA 146
Query 230 CATGTTCTGTTTCAGAAACAGCTACACTGAGAATGAAACTGTGTTTCACATGAAAAATAA 289
|||||||||||| |||||| | ||||||||| ||||| |||| |||||| | | ||
Sbjct 147 CATGTTCTGTTTTAGAAACTGTTACACTGAGGCTGAAATTGTGAATCACATCACCCAGAA 206
Query 290 GTTTCCGTCTTTAGTACCTGCGGATGCGGATGTGAGAAAGTTCTTTAAATTG-TTGATAT 348
| |||| |||| |||||||||||| | |||||||| |||| | | | || |||
Sbjct 207 GATTCCTTCTTCAGTACCTGCGGA-----A-GTGAGAAATTTCTGT-CAGGGATTTATAG 259
Query 349 CAGCGACCGGTAAAGAGTCAAAAAAGGCGTATCTCAAGGATGCTGAAGCTTGTTGGT-CT 407
| | || || |||||| | || | | | |||||||||||||||||||| ||| || | |
Sbjct 260 CCGTGATCGATAAAGATTTAAGAGACGTGTATCTCAAGGATGCTGAAGATTG-TGCTAGT 318
Query 408 CG-AAG-ATGTAGTCAGGGGCGTGACACTTCTGAGGAAGCTAAGA-ACAGTCAAGGTGAG 464
| ||| ||| ||||||| ||||| ||||||||||||||||||| | ||||||||||||
Sbjct 319 -GAAAGAATG-AGTCAGGCTCGTGATACTTCTGAGGAAGCTAAGAGA-AGTCAAGGTGAG 375
Query 465 GCCAGTACATCTCACAAATGTGAACGTAACTGC 497
||||||||||||||||||||||||| |||||||
Sbjct 376 GCCAGTACATCTCACAAATGTGAACCTAACTGC 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25199248137
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5