BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61100.1
Length=2869
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315245 jgi|Araly1|315245|fgenesh1_pm.C_scaffold_2000278 3432 0.0
> Ahg315245 jgi|Araly1|315245|fgenesh1_pm.C_scaffold_2000278
Length=2691
Score = 3432 bits (1858), Expect = 0.0
Identities = 2093/2206 (95%), Gaps = 17/2206 (1%)
Strand=Plus/Plus
Query 387 TTTGTGAGATTTGTAAACACGCCTGCGATTATCGAAAGATTTGCGACTCTGGAGAAAGAG 446
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 487 TTTGTGAGATTCGTAAACACGCCTGCGATTATCGAAAGATTTGCGACTTTGGAGAAAGAG 546
Query 447 ATTTTGCAGATTGAGAATTCTATTCAAGCTAATGAAATTGCCAA---TGCTGCTGATGCT 503
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 547 ATTTTGCAGATTGAGAATTCTATTCAAGCTAATGAAATTGCCAACGCTGCTGCTGATCCT 606
Query 504 CTGCAATTACAAGACGGGAGTAATTCTGGAGATAGCAGTAATCTAAAGAAGTCGAATGAG 563
||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 607 CTGCAATTACAAGACGGGAGTAATTCTGGAGTTAGTAGTAATCTAAGGAAGTCGAATGAG 666
Query 564 TCCTCTAAGAAGGAATCTGAGAATGGCAATGAGGTGGTAGGAGAGGAAACCTCTAAGATT 623
||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct 667 TCCTCTAAGAAAGAATCTGAGAATGGCAATGAGGTTGCAGGAGAGGAAACCTCCAAGATT 726
Query 624 CAACTTCAACGTCTTCTTGAAACTAGAAGAACATTGCTTCGAAGAGAGCAAGCAATGGCT 683
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 727 CAACTTCAACGTCTTCTTGAAACTAGAAGAACATTGCTTCGAAGAGAGCAAGCGATGGCG 786
Query 684 TATGCACGAGGGGTTGTTGCTGGTTATGAAATTGATAGTATTGATGATCTCATTTTATTT 743
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 787 TATGCACGAGGGGTTGTGGCTGGTTATGAAATTGATAGTATTGATGATCTCATATTGTTT 846
Query 744 GCTGATGCTTTCGGGGCTTCAAGGTTAAGAGAAGCATGCATAATGTATAAAGAACTATGG 803
||||||||||| || || ||||||||||| |||||||| ||| |||||||||||||||
Sbjct 847 GCTGATGCTTTTGGTGCGTCAAGGTTAAGGGAAGCATGTGTAAAATATAAAGAACTATGG 906
Query 804 AAGAAGAAGCACGGTGATGGGCTTTGGATGGCGGAATTAGCAGCTGTGAAAGCGTGTGCT 863
||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 907 AAGAAGAAGCATGGAGACGGGCTTTGGATGGCAGAATTAGCAGCTGTGAAAGCGTGTGCT 966
Query 864 CCAGTGGACATGTCATTGTTGGGTTCCTCAGGCATCATCCTC-ACTAATGAAGGTGCTGC 922
||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||
Sbjct 967 CCAGTGGACATGTCATTATTGGGTTCCTCAGGGATCATCCTCAAC-AATGAAGGTGCTGC 1025
Query 923 TCTATCACTAAATGGGACAGACTCAATGCCATCTAATACAGATGACAAGTCAGTTAATTT 982
|||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 1026 TCTATCACTAAATGGGACCGAGTCAACACCATCTAATACAGATGACAAGTCAGTTAATTT 1085
Query 983 AGAGCAACATCCGTCCGGTGTTCCAAACTTTCAAGCACCAATGGGATGGCCAAACCATAT 1042
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1086 AGAGCAACATCCGTCCGGTGTTCCAAACTTTCAAGCACCAATGGGATGGCCGAACCATAT 1145
Query 1043 GCCTCAATACTTTTACCCGTCTCCATACCAAGGCTATCCGTACCCTCCTATGCAACACAT 1102
|||||||||||| |||||| |||| ||||||||||||||||||||||||||||| || ||
Sbjct 1146 GCCTCAATACTTCTACCCGCCTCCGTACCAAGGCTATCCGTACCCTCCTATGCAGCATAT 1205
Query 1103 GCCAAATCAAAACCAAGGAAACATGCCATGGCCTTCAAGGGGCAAAACATCCAAGAAAAA 1162
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1206 GCCAAATCAAAACCAAGGAAACATGCCATGGCCTTCAAGGGGCAAACCTTCCAAGAAAAA 1265
Query 1163 AGGGAAGGGGGATTCTGATGGAGATGAGTCTAGTGAATCAAGTGAATCTAGTGAATCTGA 1222
|||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1266 AGGGAAAGGGGATTCTGATGGAGATGAGTCTAGCGGGTCAAGTGAATCTAGTGAATCTGA 1325
Query 1223 ATCGGCCAGCGATGATTCTGCTTCATCTTTGGAAGATCAAGGTAAAAGACACTCTCGTAC 1282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CTCGGCCAGCGATGATTCTGCTTCATCTTTGGAAGATCAAGGTAAAAGACACTCTCGTAC 1385
Query 1283 AAGTAAAAACTCACGCCGATCAAAGAAAAACCGGAAGAAGTCATCTAAAACTGTTATCAT 1342
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GAGTAAAAACTCTCGTCGATCAAAGAAAAACCGGAAGAAGTCATCTAAAACTGTTATCAT 1445
Query 1343 CCGTAATATTAACTATATAACCCCGGAGGGAAGAAATGGAGACATGGAGGGAAATGAGTT 1402
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1446 CCGTAATATTAACTACATAACCCCCGAGGGAAGAAATGGAGACATGGAGGGAAATGAATT 1505
Query 1403 TACGGACAACGGTTCCATCAAAGAGACTGTAGATGCTGCTGTTGGAATGCTCAACGAAAA 1462
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TACAGACAACGGTTCCATCAAAGAGACTGTAGATGCTGCTGTTGGAATGCTCAACGAAAA 1565
Query 1463 AAGAGCTCATGAGGGAGAAGTTTCTGGTGAAGAAAAACGAAGCAACGAGAATTGGGATTC 1522
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1566 AAGAGCTAATGAGGGAGAAGTCTCTGGTGAAGAAAAACGAAGCAACGAGAATTGGGATTC 1625
Query 1523 ATTTCAGAATATTTTGATGAGGCACGATGATGGCTCAGATGTGCATTCAATGGATGTCAT 1582
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1626 ATTTCAGAATATTCTGATGAGGCACGATGATGGCTCAGATGTGCATTCGATGGATGTCGT 1685
Query 1583 CGGTCAGGAGCATTTCACACATAGAGGCGCTAGTGTGGGTGCAAATTCTAATGGCTTGCA 1642
| | ||||||||||||| | ||||||| ||||||||||||| |||||||| ||||||||
Sbjct 1686 CAATGAGGAGCATTTCACCCGTAGAGGCTCTAGTGTGGGTGCGAATTCTAACGGCTTGCA 1745
Query 1643 AACAAAGAACACTGCCTCGGGTGATTCCATCATCACAACGCATAAGTACATAGAAGATGG 1702
||||||||||||||||||||||||||||||||||||||| || || ||| ||||| ||||
Sbjct 1746 AACAAAGAACACTGCCTCGGGTGATTCCATCATCACAACTCAGAAATACTTAGAAAATGG 1805
Query 1703 AGGA-GA--TAGCTTTGATCATTTTGAAAGTGAGGATAGTGCTCGCAGGCTTCCAAGAAC 1759
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1806 AGGAGGAGCGAGCTTTGATCATTTTGAAAGTGAGGATAGTGCTCGTAGGCTTCCAAGAAC 1865
Query 1760 GAGGGACTCGACTGAAGAATGTATGTTACTGCTTAAGAGATCAGAAATGTTAGGAGATGA 1819
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1866 GAGGGACTCGACTGAAGAATGTATGTTACTGCTTAAAAGATCAGAAATGTTAGGAGATGA 1925
Query 1820 AAGCAAAGACATGTATAATGCTACAAGGGGTGAATCGTTGGTGAAGAAGTCAGGGAGTGG 1879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 AAGCAAAGACATGTATAATGCTACAAGGGGTGAATCGTTGGTGAAGAAGTCAGGGAGTGG 1985
Query 1880 AGAGGATTGGTTTACTGCTTCGGGTAATCGTGCTGGGAAACCGGAAATCAACTACGGGAG 1939
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1986 AGAGGATTGGTTTACTGCTTCTGGTAATCGTGCTGGGAAACCGGAAGTCAACTACGGGAG 2045
Query 1940 AATGTCATTTGATGACAGCATTTTGACATCTCAAGGTTCTGATAAGAGCAAGAAACAAGA 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 AATGTCATTTGATGACAGCATTTTGACATCTCAAGGTTCTGATAAGAGCAAGAAACAAGA 2105
Query 2000 ATTCGTTGATGATTCTTTCATGGTCCATTCATCATCGCTTGCTGCTGATGATCTTTATGA 2059
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2106 ATTCGTTGATGATTCTTTCATGGTCCATTCATCATCGCTTGCTGCTGATGATCTGTATGA 2165
Query 2060 CTCTCGGTGGAGACCAGACATGGCTGCTGATATTGTTTTAGCCTCTGACGTTGACAACGG 2119
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2166 CTCTCGGTGGAGACCAGACATGGCTGCTGATATTGCTTTAGCCTCTGACATTGACAACGG 2225
Query 2120 GCATGCTAATGAAAAACACGATTCATGGGAACCAAATGATCTTTGTATGATTCCTGAACG 2179
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2226 TCATGCTAATGAAAAGCACGATTCATGGGAACCAAATGACCTTTGTATGATTCCTGAACG 2285
Query 2180 CAATTCAGGAGACTCTTTGGCTAATGATTATTCGATTGATTTCTCTGCTGAAGCAAATGC 2239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2286 CAATTCAGGAGACTCTTTGGCTAATGATTATTCGATCGATTTCTCTGCTGAAGCAAATGC 2345
Query 2240 AAGGCTATCCAGTAACGGAACAGCTCAGGAGAAAGAAGATAAGAGCG------GCG---A 2290
||||||||| |||||||||||| | ||||||||||||||||||| || ||| |
Sbjct 2346 AAGGCTATCGAGTAACGGAACAACGCAGGAGAAAGAAGATAAGACCGTCTCAAGCGGTGA 2405
Query 2291 GAAGAAAAACAATGTGAAGAACCCGGAAACTCGTAAGTCTAAAACTCCAAGTAGAACCAG 2350
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2406 GAAGAAAAACAATGTGAAGAACCCGGAAACTCGTAAGTCTAGAACTCCAAGTAGAACCAG 2465
Query 2351 AGCGGAAACAATGTCCAAGACTGCAAAGAAACCAACAGTAGCTAGCAGAACAATGGCACA 2410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2466 AGCGGAAACAATGTCCAAGACTGCAAAGAAACCAACAGTAGCTAGCAGAACAATGGCACA 2525
Query 2411 GAAGAACAAGTTTGAAAAGGAAGAAGAGATGCGGAAGAGAATAGAAAACCTTGTAATGGA 2470
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2526 GAAGAACAAGTTTGAAAAGGAAGAAGAGATGCGGAAGAGAATAGAGAATCTTGTAATGGA 2585
Query 2471 AAGGCAAAAAAGAATCGCAGAGAGATCAGCCATGACTGCATCTCGTAAAGTTTCTCTAGA 2530
|||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 2586 AAGGCAAAGAAGAATCGCAGAGAGATCAGCCATGACTGCATCCCGAAAAGTTTCTCTCGA 2645
Query 2531 CAAAGGTTCGAGCAGAGCTCCTTTGGTTCGCGAAAGGGCTACATAA 2576
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2646 TAAAGGTTCGAGCAGAGCTCCTTCGGTTCGCGAAAGGGCTACATAA 2691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108290566535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5