BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61110.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315244 jgi|Araly1|315244|fgenesh1_pm.C_scaffold_2000277 1543 0.0
> Ahg315244 jgi|Araly1|315244|fgenesh1_pm.C_scaffold_2000277
Length=981
Score = 1543 bits (835), Expect = 0.0
Identities = 934/981 (95%), Gaps = 9/981 (1%)
Strand=Plus/Plus
Query 129 ATGGAAAACATGGGGGATTCGAGCATAGGGCCGGGCCATCCGCATCTCCCTCCCGGGTTT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAAACATGGGGGATTCGAGCATAGGGCCGGGCCATCCGCATCTCCCTCCCGGGTTT 60
Query 189 CGGTTTCACCCGACTGATGAGGAACTAGTAGTTCATTACCTCAAGAAGAAAGCAGATTCT 248
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 61 CGGTTTCACCCGACTGATGAGGAACTAGTGGTTCATTACCTCAAGAAGAAAGCTGCTTCT 120
Query 249 GTTCCACTTCCAGTCTCAATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAG 308
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 121 GTTCCACTTCCGGTCTCAATCATCGCCGAGATTGATCTTTACAAGTTCGATCCTTGGGAA 180
Query 309 CTTCCAAGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGG 368
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCCAAGCAAAGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGG 240
Query 369 AAGTATCCAAATGGGGTTAGGCCAAACCGGGCAGCAACTTCCGGTTATTGGAAAGCAACG 428
|||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AAGTATCCGAATGGTGTTAGACCAAACCGTGCAGCAACTTCCGGTTATTGGAAAGCAACG 300
Query 429 GGAACCGATAAACCGATATTTACGTGCAATAGTCACAAGGTTGGTGTCAAGAAAGCGCTT 488
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAACAGATAAACCGATATTTACGTGCAATAGTCACAAGGTTGGTGTCAAGAAAGCGCTA 360
Query 489 GTTTTTTACGGTGGAAAGCCTCCTAAAGGGATAAAAACAGATTGGATCATGCATGAATAT 548
|| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GTGTTTTATGGTGGAAAACCTCCTAAAGGGATCAAAACAGATTGGATCATGCATGAATAT 420
Query 549 CGCCTCACTGATGGTAACCTTAGCACTGCGGCTAAGCCGCCTGACTTAACCACGACAAGG 608
|||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct 421 CGCCTCACTGATGGTAACCTAAGCACTGCGGCTAAGCAGCCTGACTTAGCCACGACAAGG 480
Query 609 AAAAACTCACTACGGCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAAAACTCACTACGGCTAGACGATTGGGTTCTATGTAGGATCTATAAGAAGAATAGTTCA 540
Query 669 CAAAGACCAACAATGGAGAGAGTATTACTTAGAGAGGATCTAATGGAAGGCATGCTCTCA 728
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 541 CAAAGACCAACAATGGAGAGAGTATTACTTAGAGAAGATCTAATGGAAGGAATGCTCTCA 600
Query 729 AAATCATCTGCTAATTCTTCTTCTACATCAGTACTAGACAACAACGACAACAA---TAA- 784
||||||||||||||||||||||| |||||||| |||||||||| ||||||||| |||
Sbjct 601 AAATCATCTGCTAATTCTTCTTCCACATCAGTCCTAGACAACAGCGACAACAACAATAAC 660
Query 785 --TAACAA---TAACGAAGAACACTTTTTCGACGGTATGGTCGTTTCTTCAGACAAACGT 839
|||||| |||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 661 AATAACAACAATAACGAAGAACACTTTTTTGACGGTATGGTTGTCTCTTCAGACAAACGG 720
Query 840 TCCTTGTGTGGTCAATACCGAATGGGCCACGAGGCCTCAGGATCATCTTCATTCGGATCT 899
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TCCTTGTGTGGTCAATACCGTATGGGTCACGAGGCCTCAGGATCATCTTCATTCGGATCT 780
Query 900 TTCTTATCGAGCAAGAGGTTTCATCATACAGGTGATCTCAACAATGATAACTACAATGTC 959
|||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 781 TTCTTATCGAGCAAGAAGTTTCATCATACAGGTGATTTCAACAATGACAACTACAATGTC 840
Query 960 TCTTTTGTTTCGATGCTTAGTGAGATTCCTCAGAGTTCGGGGTTTCATGCAAATGGTGTT 1019
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 TCTTTTGTTTCAATGCTTAGTGAGATTCCTCAGAGTTCGGGGTTTCATGCAAATGGAGTT 900
Query 1020 ATGGATACGACGTCGTCTCTAGCTGATCATGGGGTTTTAAGACAGGCGTTTCAGCTTCCT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATGGATACGACGTCGTCTCTAGCTGATCATGGGGTTTTAAGACAGGCGTTTCAGCTTCCT 960
Query 1080 AACATGAACTGGCACTCataa 1100
|||||||||||||| ||||||
Sbjct 961 AACATGAACTGGCATTCATAA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5