BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61120.1
Length=2899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924923 jgi|Araly1|924923|scaffold_200484.1 3989 0.0
Ahg338258 jgi|Araly1|338258|fgenesh1_pg.C_scaffold_2000357 1221 0.0
> Ahg924923 jgi|Araly1|924923|scaffold_200484.1
Length=2677
Score = 3989 bits (2160), Expect = 0.0
Identities = 2506/2674 (94%), Gaps = 19/2674 (1%)
Strand=Plus/Plus
Query 42 ttATAAAAACAATGAAGTCTTCTTACGGTTCTTCCTCTAATGATCTCCACGCTTTTGTCA 101
||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||
Sbjct 10 TTAGAAAAACAATGAAGTCCTCTTACGCTTCTTCCTCTGATGATCTCCACGCTTTGGTCA 69
Query 102 ATGAGATCAAGGGAGAAATTCAGTTGTCCAACATTAATCTTGATCCTTACTCATTTGTCT 161
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ATGAGATCAAGAGAGAAATTCAGTTGTCCAACATTAATCTTGATCCTTACTCATTTGTCT 129
Query 162 CTCCTTCCGCTTACGACACGGCTTGGTTATCCATGATCGAAGAAGACATCAACGTAGATG 221
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 130 CTCCTTCAGCTTACGACACGGCTTGGTTATCCATGATCGAAGAAGAAAACAACGTAGGTG 189
Query 222 ATAATGAGCTTAAACCGATGTTCCAAGGTTGTCTAGATTGGATTATGTGCAATCAAAATG 281
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 190 ATGATGAGCTTAAACCGATGTTCCAAGATTGTCTAGATTGGATTATGTGCAATCAAAATG 249
Query 282 CCAGAGAAGGTTTCTGGATG-AACTCCACCAGTTATACAACGGTGGCTGATGGCAGAGAC 340
||||||||||||||||| | |||||| |||||||| ||||||||||||| | ||||
Sbjct 250 CCAGAGAAGGTTTCTGG-GGAAACTCCGGAAGTTATACTACGGTGGCTGATGCCGGAGAT 308
Query 341 GAAGACGGCGAAAAGGACATGTGTATTCTAACTTCCACTCTTGCTTGTGTTGTAGCACTT 400
|||| ||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 309 GAAGGCGGCGAAGAGGACATGTATATTCTCAGTTCCACTCTTGCTTGTGTTGTAGCACTT 368
Query 401 CAGAAATGGAATATTGGGTGTTTTCATCTCCACAAAGGGACGAGATATATCGAAAGAAAT 460
||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CAGAAGTGGAACACTGGGTGTTTTCATCTCCACAAAGGGACGAGATATATCGAAAGAAAT 428
Query 461 ACGGAGATGATAATTGGGAAATACATCAACGAAGAAGGATCTTATCCTCGTTGGTTCGCT 520
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 429 ACGGAAATGATAATTGGAAAATACATCAACGAAGAAGGATCTTATCCTCGTTGGTTCGTT 488
Query 521 ATCAAATTCACAGGAATCCTAGAGCTTGCTCAAAAACTTGGCTTACACTTTGTTTTCTCT 580
||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 489 ATCAAATTCACAGGAATCCTAGAGCTTGCTCAACAACTTGGCTTACATTTTGTCTTCTCT 548
Query 581 AGTCGCTGTATCGAAATGATCAAAGGGATGTTTTATCAACGCCAAGAGATTATCCAAAGA 640
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 549 AGTCGCTGCATCGATATGATCAAAGGGATGTTTTATCAACGCCAAGAGATTATCAAAAGA 608
Query 641 GAAAAATTGGTACATGACTGTAATTATAAACCTTTACTGGCCTATCTAGAGGTGTTGCCA 700
||||||||||| |||| ||||| || |||||| | ||||||||||||||||||| |||
Sbjct 609 GAAAAATTGGTGGATGATTGTAACTACAAACCTCTGTTGGCCTATCTAGAGGTGTTACCA 668
Query 701 TCGAAATTATATGTCACAAATCAAGAAGACATCATTGTGAAGAGTCTCGACAGTATGGAT 760
| |||||||||||||| |||| ||||||||||||| || ||||||||||||||||| |||
Sbjct 669 TGGAAATTATATGTCAAAAATAAAGAAGACATCATCGTTAAGAGTCTCGACAGTATCGAT 728
Query 761 GGCTCTTTGTTTCAGTCACCTTCAGCAACTGCATCAGCGTTTATGCTCACTCGCAACACA 820
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 729 GGCTCGTTATTTCAGTCACCTTCAGCAACTGCGTCAGCGTTTATGCTCACTCGCAACACA 788
Query 821 AAATGTCTAGCTTATCTTCAAAATCTCGTTCAAAAATGCCCTAATGGAGTGCCACAAAAG 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AAATGTCTAGCTTATCTTCAAAATCTCGTTCAAAAATGCCCTAATGGAGTGCCACAAAAG 848
Query 881 TACCCTCTCAATGAAGATCTCATAAAACTCTCCATGGTTAATCTAATCGAGAGTACTGGT 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TACCCTCTCAATGAAGATCTCATAAAACTCTCCATGGTTAATCTAATCGAGAGTACTGGT 908
Query 941 TTAGGAGAGTTCTTTGGTATAGAGATTGAACACGTTCTGGAACAAGTTTACAGCCGCTAC 1000
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 909 TTAGGAGAGTTCTTCGGTATAGAGATTGAACACGTTCTTGAACAAGTTTACAGGCACTAT 968
Query 1001 GAAGAAAAAGATTTTGAGAGAATGCCCATGAGTTATCTGGCGGATCAATTGCACAAAGAC 1060
|| ||||||||| | ||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 969 GAGGAAAAAGATGTCGAGAGAATGTCCATGAGTTATCTAGCTGATCAATTGCACAAAGAC 1028
Query 1061 TCTCTTGCATTTCGAATGTTAAGAATGCATGGTCGGGATGTTTCACCTAGAAGCTTTTGC 1120
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1029 TCTCTTGCATTTCGGATGTTAAGAATGCATGGTCGAGACGTTTCACCTAGAAGCTTTTGT 1088
Query 1121 TGGTTCTTGAATGATCAAGAAACT-CGAAATCATTTAGAAAGAAATATAGACTCTTTCTT 1179
|||||||||||||||||||||| | ||| |||| ||||||||||| ||||||||||||||
Sbjct 1089 TGGTTCTTGAATGATCAAGAAA-TGCGATATCAGTTAGAAAGAAACATAGACTCTTTCTT 1147
Query 1180 GCTTGTGATCCTAAGTGTTTACAGAGCCACGGATCTCATGTTTCCGGGAGAGCATGATCT 1239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GCTTGTGATCCTAAATGTTTACAGAGCCACGGATCTCATGTTTCCGGGAGAGCATGATCT 1207
Query 1240 TCAAGAAGCAAGAGAATATACTCGGAATTTACTCGAGAAACGTCGGTCCATCAAAGAAAA 1299
| |||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||
Sbjct 1208 TGAAGAAGCAAGAGAATATACTCGGAATTTACTCAAGAAAAGTCGGTCCATTAATGAAAA 1267
Query 1300 AATGATTATGCATGAATTAAGTACTCCATGGATAGCTCGACTCAAACACCTTGACCATAG 1359
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1268 AATGATTGTGCATGAATTAAGTACTCCATGGATAGCTCGACTCAAACACCTTGATCATAG 1327
Query 1360 GATGTGGATTGAGGACAAGAACTCAAATGTTTTATCCA-T-GGAAAAAGCCTCTTTTCTA 1417
||||||||||||||||||||||||||||| | || | | |||||| ||||||||||||
Sbjct 1328 GATGTGGATTGAGGACAAGAACTCAAATGCCCTCTC-AGTCGGAAAA-GCCTCTTTTCTA 1385
Query 1418 AGACTACATAGTTCGTATAGCGACAAACTGACTCATCTTGCTGCAAGAAAC-TTCGAGTT 1476
|||||| | | | |||||||| ||||||||||||||||||| |||| |||| ||||||||
Sbjct 1386 AGACTAAACAATGCGTATAGCAACAAACTGACTCATCTTGCCGCAA-AAACCTTCGAGTT 1444
Query 1477 TCAACAAGCCAAATACTGTCGCGAGCTGGAGGAACTGACAATGTGGGTAAAGAAATGGGG 1536
|| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1445 TCGACAAGCCAAATATTGTCGCGAGCTGGAGGAATTGACAATGTGGGTAAAGAAATGGGG 1504
Query 1537 ACTTAGTGATATTGGTTTCGGTAGAGAGAAGACAACATATTGTTACTTTGCAACTGTGAC 1596
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1505 ACTTAGTGATATTGGTTTTGGTAGAGAGAAGACAACATATAGTTACTTTGCAACTGTGAC 1564
Query 1597 TTCGTTGCCCTATGAATATGCCATTAAATTTGGTAAGCTTGCAGCAAAAACTGCTATCCT 1656
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1565 TTCGTTGCCCTATGAATATGCCATTAAATTTGGTAAGCTTGCAGCAAAAAGTGCCATCCT 1624
Query 1657 CATCACAATTGCCGATGACTTCTTCGATGAAAAAGGTTCCTTCAATGACTTGGAAGGTCT 1716
|||||||||||||||||| ||||| |||||| |||||| ||||||||| |||||| |||
Sbjct 1625 CATCACAATTGCCGATGATTTCTTTGATGAAGTAGGTTCTTTCAATGACCTGGAAGCTCT 1684
Query 1717 TACTAAAGCAGTTTTAAGATGGGAAGGAGAAGAGCTTAAAAGTTACGGCAATATCATTTT 1776
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1685 TACTAAAGCAGTTTTAAGATGGGAAGGAGAAGAGCTTAAAGGTTACGGCAAGATCATTTT 1744
Query 1777 TAGAGCACTTGATGATATTGTAAGAGAGACTGCAAATACTTGTCGTACGCACCACAAAAC 1836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 CAGAGCACTTGATGATATTGTAAGAGAGACTGCAAATACTTGTCGTACGCACCACAAAAC 1804
Query 1837 CGACATAATTGTCCATCTTCGCAACATCTGGGGTGAAACATTTGAGTCGTGGCTACGTGA 1896
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1805 CGACATAATCGTCCATCTTCGCAACATCTGGGGTGAAACATTTGAGTCGTGGCTGCGTGA 1864
Query 1897 AGCTGAATGGAGTAAAAAGGGACACACA-TCGTCAATGGACGAATATATTCGAAACGGAA 1955
||||||||||||||| |||||||||||| | ||| ||||| |||||||||||||||||||
Sbjct 1865 AGCTGAATGGAGTAAGAAGGGACACACAGT-GTCGATGGAAGAATATATTCGAAACGGAA 1923
Query 1956 TGATCTCAATCGCAGCACACACCATTGCTCTTTCCATCTCATGTCTCATGGAACCTTGTT 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TGATCTCAATCGCAGCACACACCATTGCTCTTTCCATCTCATGTCTCATGGAACCTTGTT 1983
Query 2016 TTCCCCACAACAAACTCAAACCGGGAAATTACGATAGCATAACTACATTGCTCATGATCA 2075
||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1984 TTCCCCAAAACAAACTCAAACAGGGAAATTACGATAACATAACTACATTGCTCATGATCA 2043
Query 2076 TACCTCGACTTTTAAATGACCTACAAAGTTATCAGAAGGAACAAGAACAAGGGAAGATGA 2135
|| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2044 TATCTCGACTCTTAAATGATCTACAAAGTTATCAGAAGGAACAAGAACAAGGGAAGATCA 2103
Query 2136 ACTCCGTGCTGCTCCACATGAAGAATCATCCAGGTCTGGAGATTGAGGACTCGATCGCTC 2195
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2104 ACTCCGTGCTGCTCCACTTGAAGAATCATCCAGGTCTCGAGATTGAGGACTCGATAGCTC 2163
Query 2196 ATATCGAAAAGATTATCGATTCAAAAAGGAAAGAGTTTCTGGAGCATGTACTAGTTGATG 2255
|||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2164 ATATTGAAAAGATAATCGATTCAAAAAGAAAAGAGTTTATGGAGCATGTACTAGTTGATG 2223
Query 2256 GACTAAGCGATTTGCCAAAACCGTGCAAGGAGATTCACATGTCTTGTTGTAAAGTCTTCG 2315
|| ||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2224 GAAAAAGTGACTTGCCGAAACCGTGCAAAGAGATTCACATGTCTTGTTGTAAAGTCTTCG 2283
Query 2316 AGATGTTTTTTAACAAGAAGAACCGTTATGATTCAAACACGGAGATGCTTCATGACATTA 2375
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2284 AGATGTTTTTTAACAAGAAGAACCGTTATGATTCGAACACGGAGATGCTTCAAGACATTA 2343
Query 2376 AGAAGGCTCTCTATGATCCCATCAATGTTTATGAACTATCAGAGATGGAGCCTATGCCAC 2435
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 2344 AGAAGGCTCTCTATGATCCCGTGAATGTTTATGAACTATCAGAGATCGAGCCTATGCCAC 2403
Query 2436 TGATGGCACATGGTGATGA-ATATATGATTCTTCCTTTGCTTTTGAACAGTTTG-C-C-A 2491
||||| ||||||||||||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 2404 TGATGACACATGGTGATGACAT-TATGATTCTTCCTTTGCTTTTGAACAGTTTGGCGCCA 2462
Query 2492 AATATTCTTGAATTTAAGAGGAAGGACGGATACGGAGCAATGAAAACATCTATGTGCTTT 2551
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2463 AATATTCTTGAATTTAAGAGGAAGGACGAATACGGAGCAATGAAAACATCTATGTGCTTG 2522
Query 2552 GGAAGAAGTTATCGTGTTAATAAACGCGTTATGGCCTCACAGCTTGATGATCAACATAAG 2611
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2523 GGAAGAACTTATAGTGTTCATAAACGCGTTATGGCCTCACAGCTTGATGATCAACAGAAG 2582
Query 2612 CCTCTCAAGATTGTTGCGTCGCAGCGGAAACCGGTACCAATGATGCAATCGATATTCGCA 2671
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 2583 CCTCTCAAGATTGTTGCCTCGCAGCGGAAACCGGTACCAATGATGCCATCAATATTCGCA 2642
Query 2672 CCATGCTTCTACTAATTAatatct-tatcattat 2704
|||||||||||||||||||| | | |||||||||
Sbjct 2643 CCATGCTTCTACTAATTAATTT-TGTATCATTAT 2675
> Ahg338258 jgi|Araly1|338258|fgenesh1_pg.C_scaffold_2000357
Length=2325
Score = 1221 bits (661), Expect = 0.0
Identities = 1646/2106 (78%), Gaps = 129/2106 (6%)
Strand=Plus/Plus
Query 367 TCTAACTTCCACTCTTGCTTGTGTTGTAGCACTTCAG-AAATGGAATATTGGGTGTTTTC 425
||| ||||| || |||||||||||||||||||||| | |||||||| ||||| || |||
Sbjct 264 TCTGACTTCGACACTTGCTTGTGTTGTAGCACTTC-GCAAATGGAACATTGGAAGTCTTC 322
Query 426 ATCTCCACAAAGGGACGAGATATATCGAAAGAAATACGGAGATGATAATTGGGAAATACA 485
|| | |||||||||| ||||||||| ||||||| |||||||| ||| |||||||||| |
Sbjct 323 ATGTTCACAAAGGGAAGAGATATATAGAAAGAAGTACGGAGAGGATTCTTGGGAAATATA 382
Query 486 TCAA---C--GAAGAA-GGATCTTATCCTCGTTGGTTCGCTATCAAATTCACAGGAATCC 539
|||| | || || ||||||| |||||||||| ||| | ||| ||||| ||| ||
Sbjct 383 TCAACTCCAATAAAAAGGGATCTTGTCCTCGTTGGCTCGTTCTCATGTTCACCGGACTCG 442
Query 540 TAGAGCTTGCTCAAAAACTTGGCTTACACTTTGTTTTCTCTAGTCG-CTGTATCGAAATG 598
| |||||| ||||| |||||||| |||| ||| | ||||||| ||| || | | |||||
Sbjct 443 TCGAGCTTTCTCAACAACTTGGCCTACAATTTCTCTTCTCTACTCGAGTGAAGC-AAATG 501
Query 599 ATCAAAGGGATGTT-TTATCAACGCCAAGAGATTATCCAAAGAGAAAAATTGGTACATGA 657
|| ||| |||| || ||||||||||||||| |||| | |||||||| || |||
Sbjct 502 AT-AAAAACTTGTTCTT-CCAACGCCAAGAGATTTTCCACCG-GAAAAATT-GTGGATGG 557
Query 658 CTGTAATTATAAAC--C--T-T-TACTGGCCTATCTAGAGGTGTTGCCATCGAAATTATA 711
| | ||| ||| | | | | || | |||||||| || |||||||||| ||||||
Sbjct 558 CCG---TTACCAACGGCAGTCTCTGCTTACGTATCTAGAAGTATTGCCATCGACATTATA 614
Query 712 TGTC-ACAAATCAAGAAGACATCATTGTGAAGAGT-C-TCGACAGTAT-GGATGGCTCTT 767
| | | |||||||||| | ||| || || ||| | | | | | | | ||||||||||
Sbjct 615 CGCCGA-AAATCAAGAACAAATC-TT-TG-AGA-TACTTGGTGA-T-TCCGATGGCTCTT 667
Query 768 TGTTTCAGTCACCTTCAGCAACTGCATCAGCGTTTATGCTCACTCGCAACACAAAATGTC 827
||||||| ||||| |||||||||||| |||||| ||||||| | |||| ||||| ||||
Sbjct 668 TGTTTCAATCACCCTCAGCAACTGCAGCAGCGTATATGCTCTCAGGCAATACAAAGTGTC 727
Query 828 TAGCTTATCTTCAAAATCTCGTTCAAAAATGCCCTA-ATGGAGTGCCACAAAAGTACCCT 886
| |||||||||||| ||| | ||||||||||| | ||||||||||||||| |||||
Sbjct 728 TGGCTTATCTTCAATCTCTTGCACAAAAATGCCC-ACATGGAGTGCCACAAATTTACCCC 786
Query 887 CTCAATGAAGATCTCATAAAACTCTCCATGGTTAATCTAATCGA-GAGTACTGGTTTAGG 945
|| |||||||| ||||| |||||| | ||||| ||| |||| || | || |||||||||
Sbjct 787 CTGAATGAAGAACTCATCAAACTCACTATGGTCAATATAATTGATAACTA-TGGTTTAGG 845
Query 946 AGAGTTCTTTGGT-ATAGAGATTGAACACGTTCTGGAACAAGTTTAC-AGCCGCTACGAA 1003
||||| ||| ||| | ||||||||| | |||| ||| ||||| || || |||||
Sbjct 846 AGAGTACTTCGGTGA-AGAGATTGATCGTTTTCTTCTTCAAATTTACAAG-AGCCACGAA 903
Query 1004 GAA-AAAGATTTTGAGAGAATGCCCATGA-G-TTATCTGGCGGATCAATTGCACAAAGAC 1060
|| | ||| | |||| ||||||||| | | ||| | ||||| ||||| |||| |
Sbjct 904 -AAGGAGGATGTCGAGAAAATGCCCAT-ATGTTTA-AAAGTAGATCAGTTGCATAAAGCC 960
Query 1061 TCTCTTGCA-TTTCGAATGTTAAGAATGCATGGTC-GGGATGTT-TCACCTAGAAGCTTT 1117
||||| | | ||||||||| | |||||| | || | |||||| | || || ||||||
Sbjct 961 TCTCTCG-AGTTTCGAATGCTGAGAATGAACGG-CTACGATGTTAT-GCCCAGGAGCTTT 1017
Query 1118 TGCTGGTTCTTGAATGATC-AAGAAACT-CGAAATCATTTAGAAAGAAATATAGACTCTT 1175
||||||||| ||||||| | |||||| | ||| || || |||| | ||| || || | ||
Sbjct 1018 TGCTGGTTCCTGAATGA-CGAAGAAA-TCCGAGATTATCTAGAGACAAACATTGAATGTT 1075
Query 1176 TCTTGC-TTGTGATCCTAAGTGTTTACAGAGCCACGGATCTCATGTTTCCGGGAGAGCAT 1234
| || | |||| || |||||||||||||||| || |||||||| ||||| |||||| |
Sbjct 1076 TATT-CTTTGTAATGTTAAGTGTTTACAGAGCAACTGATCTCATCTTTCCAGGAGAGTGT 1134
Query 1235 GATCTTC-AAGAAGCAAGAGAATATACTCGGAATTTACTCGAGAAACGTCGGTCCATCAA 1293
|| | || ||||||| ||||| | | ||||||| |||||||| ||| ||| | ||| |
Sbjct 1135 GAAC-TCGAAGAAGCTAGAGAGTTTTCTCGGAAATTACTCGACAAAAGTCAATTTATCGA 1193
Query 1294 AGAA--AA-AATG---A---TT---A-T--GCATGAATTAAGTACTCCATGGATAG-CTC 1337
||| || || | || | | ||||||||||||||||||||||| | |||
Sbjct 1194 TGAACCAATTGTGCCTACTTTTCACATTAAACATGAATTAAGTACTCCATGGAT-GACTC 1252
Query 1338 GACTCAAACACCTTGACCATAGGATGTGGATTGAGGACAAGAACTCAAATGTTTTATCCA 1397
|||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||| || |
Sbjct 1253 GACTCAAACATCTTGATCATAGGATGTGGATTGAGGACAAGGACTCAAATGCTTTCTCAA 1312
Query 1398 -TGGAAAAAGCCTCTTTTCTAAGACTACATAGT-TCGTATAGCGACAAACTGACTCATCT 1455
||| ||||||||| || | || | | ||| | ||||||||||| || ||||||||
Sbjct 1313 TTGG-AAAAGCCTC--TT-T--GA-T-C--AGTAT-ATATAGCGACAAGCTTACTCATCT 1361
Query 1456 TGCTGC-AAGAAACTTCGAGTTTCAACAAGCCAAATACT-GTCGCGAGCTGGAGGAACTG 1513
|||| | ||||| || || ||| |||||| | ||| | | | ||| ||||||| |||
Sbjct 1362 TGCT-CTGAGAAATTTTGAACTTCGACAAGCTATATA-TCGACATGAGATGGAGGACCTG 1419
Query 1514 ACAATGTGGGTAAAGAAATGGGGACTTAGTGATATTGGTTTCGGTAGAGAGAAGACAACA 1573
| | |||||| ||||||| ||||||| ||||| || ||||| |||||||||||||||
Sbjct 1420 ATGACGTGGGTGAAGAAATCAGGACTTAACGATATCGGATTCGGAAGAGAGAAGACAACA 1479
Query 1574 TATTGTTACTTTGCAAC-T-GT---G-ACTTCGTTGCCCTA-TGAATATGCCATTAAAT- 1625
||||| || |||||| | | | | || || || |||| | || || | | |||
Sbjct 1480 TATTGCTATTTTGCAGCTTCATCAAGCACCTCATT-ACCTATTAAAGCCGCAACT-AATA 1537
Query 1626 TTGGTAAGCTTGCAGCAAAAACTGCTATCCTCATCACAATTGCCGATGACTTCTTCGATG 1685
|| |||||||| ||||| | || ||||| || ||| |||| ||||| |||||||| |
Sbjct 1538 TTCGTAAGCTTATGGCAAAGAGTGGGATCCTTATTACAGTTGCTGATGATTTCTTCGACG 1597
Query 1686 AAAAAGGTTCCTTCAATGACTTGGAAG-GTCTTACTAAAGCAGTTTTAAGATGGGAAGGA 1744
|| ||||||| || |||| ||||||| | ||||||||||| ||| ||||||||||||||
Sbjct 1598 AAGAAGGTTCTTTTGATGAATTGGAAGCG-CTTACTAAAGCTGTTATAAGATGGGAAGGA 1656
Query 1745 GAAGAGCTTAAAAGTTACGGCAATATCATTTTTAGAGCACTTGATGATATTGTAAGAGAG 1804
|||||||||||| |||||||||||||||| || | |||||||||||| | |||| || |
Sbjct 1657 GAAGAGCTTAAAGGTTACGGCAATATCATATTCAAAGCACTTGATGACCTCGTAAAAGTG 1716
Query 1805 ACTGC-AAATACTTGTCGTACGCACCACAAAACCGACATAATTGTCCATCTTCGCAACAT 1863
||||| || ||||| | || | ||| ||| ||||||| |||||| ||||||||
Sbjct 1717 ACTGCTGAA-ACTTGCCTTAAGGGTCACGGAACTGACATAACAAACCATCTACGCAACAT 1775
Query 1864 CTGGGGTGAAACATTTGAGTCGTGGCTACGTGAAGCTGAATGGAGTAAAAAGGGACACAC 1923
||| | ||||||||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 1776 TTGGAGCGAAACATTTGAGTCGTGGCTACGTGAAGCCAAATGGAGTAAGAAGGGATACAT 1835
Query 1924 ATCGTCAATGGACGAATATATTCGAAACGGAATGATCTCAATCGCAGCACACACCATTGC 1983
| | || ||||| |||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct 1836 ACCATCGATGGAAGAATATCTTCGAAATGGAATGATCTCAATCGCAACACACACCATTGT 1895
Query 1984 TCTTTCC-A-TCTCATGTCTCATGGAACCTTGTTTTCCCCA-CAACAAACTCAAACCGGG 2040
|||| || | | | |||||||||||| ||||||||||||| || |||||||||||| ||
Sbjct 1896 TCTT-CCTACTTTG-TGTCTCATGGAATCTTGTTTTCCCCAACA-CAAACTCAAACCCGG 1952
Query 2041 AAATTACGATAGCATAACTACATTGCTCATGATCAT-ACCTCGACTT-TTAAATGACCTA 2098
|||||| |||| |||||| ||||||||||||| ||| || |||||| |||| ||| |||
Sbjct 1953 AAATTATGATAACATAACAACATTGCTCATGACCATTAC-TCGACTCCTTAA-TGATCTA 2010
Query 2099 CAAAGTTATCAGAAGGAACAAGAACAAGGGAAGATGAACTCCGTGCTGCTCCACATGAAG 2158
|||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 2011 CAAAGTTACCAGAAGGAACAAGAACAAGGCAAGATCAACTCCGTGCTACTCCACATGAAA 2070
Query 2159 AATCATCCAGGTCTGGAGATTGAGGACTCGATCGCTCATATCGAAAAGATTATCGATTCA 2218
|||||| ||| ||||||||||||| ||| | ||| ||| |||||||| || ||||
Sbjct 2071 AATCATAGTGGTTTGGAGATTGAGGATTCGGTTGCTTGTATTGAAAAGATCATTGATTTG 2130
Query 2219 AAAAGGAAAGAGTTTCTGGAGCATGTACT-A-GTTGA-TGGACTAAGCGATTTGCCAAAA 2275
|| |||||||| ||| |||||||||| || | | || | | | || |||||| | |||
Sbjct 2131 AAGAGGAAAGAATTTATGGAGCATGT-CTTAAG--GAATAAATTCAGTGATTTGTCTAAA 2187
Query 2276 CCGTGCAAGGAGATTCACATGTCTTGT-TGTAAAGTCTTCGAGATGTTTTTTAACAAGAA 2334
|| ||||| || ||||||||||||| | || ||||| || |||||||| || ||||| ||
Sbjct 2188 CCATGCAAAGATATTCACATGTCTT-TATGCAAAGTTTTTGAGATGTTCTTCAACAAAAA 2246
Query 2335 GAACCGTTATGATTCAAACACGGAGATGCTTCATGACATTAAGAAGGCTCTCTATGATCC 2394
||| ||||||||||| | |||||||||||| | ||||||||||||||||| || |||||
Sbjct 2247 GAATCGTTATGATTCGGATACGGAGATGCTTGAAGACATTAAGAAGGCTCTTTACGATCC 2306
Query 2395 CATCAA 2400
||||||
Sbjct 2307 CATCAA 2312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109433273885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5