BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61130.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475213 jgi|Araly1|475213|fgenesh2_kg.2__343__AT1G61130.1 2049 0.0
Ahg471242 jgi|Araly1|471242|fgenesh2_kg.1__1196__AT1G11080.1 396 3e-109
> Ahg475213 jgi|Araly1|475213|fgenesh2_kg.2__343__AT1G61130.1
Length=1392
Score = 2049 bits (1109), Expect = 0.0
Identities = 1305/1399 (93%), Gaps = 16/1399 (1%)
Strand=Plus/Plus
Query 1 ATGATGAACATTTCCAATGTGTCCATTGCTTTGTATCTTTGCACTCTTTTCGCATTTGTT 60
||||||||||||| ||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 1 ATGATGAACATTTTCAATGTGTCTATTGCTTTGTATCTTTGCATTCTTTTCGTATTTGTT 60
Query 61 TCATCTGATAGTCCAGAAGCAATGAGAGATCTTGTGACAAACTTTCCTGGCCAACCAAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATCTGATAGTCCAGAAGCAATGAGAGATCTTGTGACAAACTTTCCTGGCCAACCAAAA 120
Query 121 GTGAGCTTCAGACATTACGCCGGTTATGTCACGGTTAAT-ATAATCAG-TGGGAGGGCTT 178
||||||||||||||||||||||||||||||||||||||| | || || |||||||||||
Sbjct 121 GTGAGCTTCAGACATTACGCCGGTTATGTCACGGTTAATGA-AA-CAAATGGGAGGGCTT 178
Query 179 TATTTTATTGGTTCTTCGAAGCTATGACTCATCCTAACGTGAAGCCTTTAGTATTGTGGC 238
| |||||||||||||||||||||||||||||| | ||||| |||||||||||| ||||||
Sbjct 179 TGTTTTATTGGTTCTTCGAAGCTATGACTCATTCGAACGTAAAGCCTTTAGTACTGTGGC 238
Query 239 TTAATGGAGGTCCTGGATGTTCTTCTGTGGGATACGGGGCTACACAAGAGATTGGTCCAT 298
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 239 TTAATGGAGGTCCTGGATGTTCTTCTGTGGGATACGGAGCAACACAAGAGATTGGTCCAT 298
Query 299 TTCTTGTCGATAATAAAGGAAAC-AGTCTTAAGTTTAACCCCTATGCATGGAATAAAGAG 357
||||||| ||||| |||||||| | |||||||||||| ||||| |||||||||||||||
Sbjct 299 TTCTTGTTGATAACGAAGGAAACGA-TCTTAAGTTTAATCCCTACGCATGGAATAAAGAG 357
Query 358 GCCAATATTCTCTTTCTTGAATCTCCTGCTGGTGTTGGGTTTTCGTATTCAAACACAAGT 417
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 358 GCCAATGTTCTCTTTCTTGAATCTCCGGCTGGTGTTGGGTTTTCGTATACAAACACAAGT 417
Query 418 AGTGATTATAGAAAACTTGGCGATGACTTTACAGCGAGAGACTCATACACTTTTCTCCAA 477
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 418 AGTGATTATAGAAAACTTGGCGATGACTTTACAGCGAGAGACTCATATATTTTTCTCCAG 477
Query 478 AAGTGGTTCTTGAGATTCCCAGCTTACAAAGAAAAGGACTTCTTCATCGCAGGAGAGAGC 537
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 478 AAGTGGTTCTTGAGATTCCCAGCTTACAAAGAAAACAACTTCTTTATCGCAGGAGAGAGC 537
Query 538 TATGCAGGAAAATACGTACCCGAGCTTGCAGAAGTTATTTATGACAAGAACAAGGAC-A- 595
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 538 TATGCAGGAAAATATGTACCCGAGCTTGCAGAGGTTATTTATGACAAGAACAAGGACCAC 597
Query 596 A-CGAAAACTTGTCTCTTCACATTAATTTAAAAGGCATTTTGCTTGGAAATCCATTGACA 654
| || | |||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 598 AACGTCAGCTTGTCACTTCACATTAATTTAAAGGGGATTTTGCTTGGAAATCCATTGACA 657
Query 655 TCATATGCGGAAGATTGGACAGGATGGGTGGATTATGCGTGGAATCACGCAGTGGTATCA 714
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 658 TCATATGCGGAAGATTGGACAGGATGGGTGGATTATGCGTGGAGCCACGCAGTGATATCA 717
Query 715 GACGAGACATACAGAGTCATA-AAACAAAGTTGCAATTTCAGTAGTGACACTACATGGGA 773
||||||| ||| |||||||| ||| | ||||||||||||||||| |||||||||||||
Sbjct 718 GACGAGATATATAGAGTCATTGAAAGGA-GTTGCAATTTCAGTAGTAACACTACATGGGA 776
Query 774 CGTTAAAGATTGCAAAGAAGGCGTGGACGAAATACTCAAACAATACAAAGAGATCGATCA 833
| |||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 777 CATTAAAGATTGCAAAGACGGCGTAGATGAAATACTCAAACAATACAAAGAGATCGATCA 836
Query 834 ATTCAGCCTGTACACTCCTATCTGCATGCACCATTCATCAAAGGTTGATTCTTATG-CAA 892
||||||||| ||||||||| ||||||||||||||||||||||||||||||| || | |||
Sbjct 837 ATTCAGCCTCTACACTCCTGTCTGCATGCACCATTCATCAAAGGTTGATTCCTACGTCAA 896
Query 893 ATTACAAGACGACGATACCGAGGCTGTTCGATGGATTTGACCCGTGTTTGGATGATTACG 952
| ||||| || |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 897 CTC-CAAGATGA---TACCAAGGCTGTTCGATGGATTTGACACGTGTTTGGATGATTACA 952
Query 953 CAAAAGTATTCTACAATAGAGCTGATGTTCAGAAGGCTCTTCACGCGACTGATGGTGTTC 1012
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 953 CAAAAGTATTCTACAATAGAGCTGATGTTCAAAAGGCTCTTCACGCGACTGATGGTGTTC 1012
Query 1013 ATCTCAAGAACTGGACCATTTGCAACGATGATATTTTAAATCACTGGAACTGGACTGATT 1072
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1013 ATCTCAAGAACTGGACCATTTGCAACGCTGATATTCTAAATCACTGGAACTGGACTGATT 1072
Query 1073 CAAAGCGATCCGTTTTGCCTATATATAAGAAACTCATTGCCGGAGGATTTAGAGTTTGGG 1132
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1073 CAAAGCGGTCCGTTTTGCCTATATATAAGAAACTCATTGCCGGAGGATATAGAGTTTGGG 1132
Query 1133 TTTATAGTGGCGATACTGATGGAAGAGTACCGGTACTCTCGACAAGGTACTGCATAAATA 1192
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1133 TTTATAGTGGCGATACTGACGGAAGAGTTCCGGTACTCTCGACAAGGTACTGCATAAATA 1192
Query 1193 AACTGGAATTACCAATCAAGACAGCTTGGAGGCCATGGTACCATGAGACACAGGTAAGTG 1252
||||||||||||||||||| ||| |||||||||||||||| || |||| |||||||||||
Sbjct 1193 AACTGGAATTACCAATCAAAACAACTTGGAGGCCATGGTATCACGAGAAACAGGTAAGTG 1252
Query 1253 GATGGTTTCAGGAATATGAAGGTCTAACGTTTGCAACGTTCAGAGGAGCAGGACATGATG 1312
|||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1253 GATGGTTTCAAGAATATGAAGGTCTAACGTTTGCAACCTTCAAAGGAGCAGGACATGATG 1312
Query 1313 TGCCTTCCTTCAAACCTAGCGAATCCCTTGCATTTTTCTCTGCCTTTCTCAACGGAGTTC 1372
||||||| |||||||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1313 TGCCTTCGTTCAAACCCAGCGAATCTCTTGCGTTTTTCTCTGCCTTTCTCAATGGAGTTC 1372
Query 1373 CTCCTCCTTTGTCGCGATA 1391
|||| ||||||||||||||
Sbjct 1373 CTCCCCCTTTGTCGCGATA 1391
> Ahg471242 jgi|Araly1|471242|fgenesh2_kg.1__1196__AT1G11080.1
Length=1875
Score = 396 bits (214), Expect = 3e-109
Identities = 401/490 (82%), Gaps = 18/490 (4%)
Strand=Plus/Plus
Query 909 ACCGAGGCTGTTCGATGGATTTGACCCGTGTTTGGATGATTACGCAAAAGTATTCTACAA 968
||||||||| | | ||||| ||| ||||| || ||||||||||| | |||||| |||||
Sbjct 1253 ACCGAGGCTCATGGGTGGATATGATCCGTGCTTAGATGATTACGCGAGAGTATTTTACAA 1312
Query 969 TAGAGCTGATGTTCAGAAGGCTCTTCACGCGACTGATGGTGTTCATCTCAAGAACTGGAC 1028
||||| |||||||||||| ||||||| || | |||||| ||| |||||||||||||||
Sbjct 1313 CAGAGCAGATGTTCAGAAGTCTCTTCATGCCAGTGATGGAGTTAATCTCAAGAACTGGAG 1372
Query 1029 CATTTGCAACGAT-GATAT-TTTAAATCACTGGAACTGGACTGATTCAAA-GCGATCCGT 1085
|||||||||| || || || ||| | | | || ||||||| |||||| || || ||
Sbjct 1373 CATTTGCAAC-ATGGAGATCTTT--A--A-T--AATTGGACTGGTTCAAACCCG-TCGGT 1423
Query 1086 TTTGCCTATATATAAGAAACTCATTGCCGGAGGATTTAGAGTTTGGGTTTATAGTGGCGA 1145
||||||||| || |||||||||| ||||||||||| ||| | |||||||| ||||| ||
Sbjct 1424 TTTGCCTATTTACGAGAAACTCATCGCCGGAGGATTAAGAATATGGGTTTACAGTGGTGA 1483
Query 1146 TACTGATGGAAGAGTACCGGTACTCT-CGACAAGGTACT-GCATAAATAAACTGGAATTA 1203
|| || ||||||||||| ||||| | |||| |||| | || ||| ||| ||||||
Sbjct 1484 CACAGACGGAAGAGTACCCGTACT-TGCGACTCGGTA-TAGCTTAAGCGCACTCGAATTA 1541
Query 1204 CCAATCAAGACAGCTTGGAGGCCATGGTACCATGAGACACAGGTAAGTGGATGGTTTCAG 1263
|| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 1542 CCCATCAAGACAGCTTGGAGGCCATGGTACCATGAGAAACAGGTAAGTGGGTGGCTTCAA 1601
Query 1264 GAATATGAAGGTCTAACGTTTGCAACGTTCAGAGGAGCAGGACATGATGTGCCTTCCTTC 1323
||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||| |||
Sbjct 1602 GAATACGAAGGTCTAACGTTTGCTACGTTCAGAGGAGCTGGACATGCGGTGCCTTGCTTT 1661
Query 1324 AAACCTAGC-GAATCCCTTGCATTTTTCTCTGCCTTTCTCAACGGAGTTCCTCCTCCTTT 1382
||||| ||| | || || || |||||||| || ||||| | |||||||||||||||
Sbjct 1662 AAACCAAGCAGC-TCTCTCGCCTTTTTCTCGGCGTTTCTTAGCGGAGTTCCTCCTCCACC 1720
Query 1383 GTCGCGATAG 1392
|||||| |||
Sbjct 1721 GTCGCGGTAG 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5