BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61150.1
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475208 jgi|Araly1|475208|fgenesh2_kg.2__338__AT1G61150.4 1611 0.0
> Ahg475208 jgi|Araly1|475208|fgenesh2_kg.2__338__AT1G61150.4
Length=1142
Score = 1611 bits (872), Expect = 0.0
Identities = 947/984 (96%), Gaps = 2/984 (0%)
Strand=Plus/Plus
Query 243 CAGCTTGAAGAAGACGACGAAGATATGGCTACTTCGAAGAAAATGATCACACGTGAAGAA 302
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 161 CAGCTTGAAGAAGACGACGAAGATATGGCTACATCGAAGAAAATGATTACACGTGAAGAA 220
Query 303 TGGGAGAAGAAACTAAATGCTGTGAAGCTTAGGAAAGAAGATATGAATACTTTGGTGATG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 TGGGAGAAGAAACTAAATGCTGTGAAGCTTAGGAAAGAAGATATGAATACTTTGGTGATG 280
Query 363 AATTTTCTTGTGACTGAAGGATATGTTGAAGCTGCTGAGAAATTCCAAAGGGAGTCTGGA 422
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AATTTTCTTGTGACTGAGGGATATGTTGAAGCTGCTGAGAAATTCCAAAGGGAGTCTGGA 340
Query 423 ACCAAACCAGAGATAGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTT 482
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 341 ACCAAACCAGAGATTGATCTTGCGACCATCACTGATCGAATGGCTGTAAAAAAGGCTGTC 400
Query 483 CAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGATACTA 542
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 401 CAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTGAATGATTTGAATCCTGAGATACTA 460
Query 543 GACACGAATCCGGAGCTCTTTTTTCATCTTCAGCAGCAAAGGTTGATAGAATTAATTCGA 602
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 461 GACACGAATCCCGAGCTCTTTTTTCATCTTCAGCAACAAAGGTTGATAGAATTAATTCGA 520
Query 603 CAAGGGAAGACAGAAGAGGCCTTAGAGTTTGCTCAGGAGGAACTTGCACCACGTGGCGAA 662
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 521 CAAGGGAAGACAGATGAGGCCTTGGAGTTTGCTCAGGAGGAACTTGCACCACGTGGCGAA 580
Query 663 GAAAACCAAGCGTTTCTGGAAGAATTGGAAAAAACTGTAGCCCTACTTGTTTTTGACGAT 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 581 GAAAACCAAGCGTTTCTGGAAGAATTGGAAAAAACTGTAGCCCTACTTGTTTTTGAAGAT 640
Query 723 GCCTCTACCTGCCCGGTTAAAGAGCTTCTTGATCTTTCCCACCGTCTTAAGACAGCAAGT 782
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 641 GCCTCTACCTGCCCGGTTAAAGAGCTTCTTGACCTTTCCCACCGCCTTAAGACAGCAAGT 700
Query 783 GAAGTAAATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAGATCCTAAACTTCCAAGC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GAAGTAAATGCAGCGATTCTTACAAGCCAGAGCCACGAAAAAGATCCTAAACTTCCAAGC 760
Query 843 TTGTTGAAGATGTTGATTTGGGCTCAAACTCAACTGGACGAGAAAGCAGTGTATCCGCAC 902
|||||||| ||| |||||||||| |||| ||||||||| |||||||||||||||||||||
Sbjct 761 TTGTTGAAAATGCTGATTTGGGCCCAAAATCAACTGGATGAGAAAGCAGTGTATCCGCAC 820
Query 903 ATTAATGATTTGTCTACCGGTAAGCTCGAAGACCCGTCAGAATGATTCCGTACTTCTTTC 962
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 821 ATTAATGATTTGTCTACTGGTCAGCTCGAAGACCCGTCAGAATGATTCCGTACTTCTTTC 880
Query 963 AGCCATTGGAAATCAGTAGCAAAAAGGAACAATGAATGGTGCTCTCTTCTCTTCCCGTCA 1022
|| |||| ||| |||| ||||||||||||||||||||||||||| | |||||| | |||
Sbjct 881 TGCAATTGAAAAACAGTTGCAAAAAGGAACAATGAATGGTGCTCT-T-CTCTTCTCTTCA 938
Query 1023 ATCTCAATAACTTACAATTCATATGCTTTCTGCTTTTCCTTTTCTTCTGCATCGGGATTT 1082
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 ATCTCAATAACTTATAATTCATATGCTTTCTGCTTTTCCTTTTCTTCTGCATCGGGATTT 998
Query 1083 GTTGGACCCGCAATCGTTAGGATATGGGGAGGGGAACATAAGCTTTTGTAGGCAATGAAT 1142
|||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 999 GTTGAACCCGCAATCGTTAGGATATGTGGAGGGGAACATAAGCTGTTGTAGGCAATGAAT 1058
Query 1143 TACTCTAGTCAAATGTTCTTATTATCAACATATTTGATGACTCATTGCATACGTGCATTT 1202
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1059 TACTCTAGTCAAATGTTCTTATTATCAACATATTTTATGACTCATTGCATATGTGCATTT 1118
Query 1203 GATTTGAATGAAGTTATCGACTTT 1226
||||||||||||||||||||||||
Sbjct 1119 GATTTGAATGAAGTTATCGACTTT 1142
Score = 215 bits (116), Expect = 7e-55
Identities = 132/139 (95%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 14 tttttttGTTTTATCAGATTGTA-AATTTAGGGAAGAGACTTTCGCAAGCAATCTAGAAG 72
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 1 TTTTTTTGTTTTATCAGATTGTAGAA-TTAGGGAAGAGACTTTCGCAGGCAATCTAGAAG 59
Query 73 CAAATCGA-TCGCCAAATCTCCGGATTATTTGCAAGAATCGTTCCCAGATAATCTTCCCC 131
|||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 60 CAAATCGATTC-CCAAATCTCCGGATTATTTGCAAGAATCATTCCCAAATAATCTTCCCC 118
Query 132 AGATTCTCCACTTCTCCAG 150
|||||||||||||||||||
Sbjct 119 AGATTCTCCACTTCTCCAG 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5