BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G61160.1 Length=632 Score E Sequences producing significant alignments: (Bits) Value Ahg907336 jgi|Araly1|907336|Al_scaffold_0002_417 625 1e-178 > Ahg907336 jgi|Araly1|907336|Al_scaffold_0002_417 Length=516 Score = 625 bits (338), Expect = 1e-178 Identities = 445/493 (90%), Gaps = 21/493 (4%) Strand=Plus/Plus Query 44 ACCAGGTCGATCAAGACATCTGGTGAACCAAAAAACTTTGAGC-TCACAGGGGTAGTTGG 102 ||| |||||||||||| ||||||||| |||||||||||||||| || ||| || ||| || Sbjct 10 ACCGGGTCGATCAAGAAATCTGGTGACCCAAAAAACTTTGAGCGTC-CAGTGGCAGTCGG 68 Query 103 GGAGGAGGATCAGCCACCCCGAGAAGCTTCTGAGCGCGGAGCCTTCGAT-GAGTCTAAGC 161 ||||||||||||||| ||||||||||||||| || |||||| ||||| | |||||||||| Sbjct 69 GGAGGAGGATCAGCCGCCCCGAGAAGCTTCTCAGGGCGGAGACTTCG-TCGAGTCTAAGC 127 Query 162 TGGTTGACGTCAACATTGCCTTGAGCTGGGAAGC-CTTTGAGGTGAAGCAAGGAACAGAG 220 ||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 128 CGGTGGACGTCAACATTGCCTTGAGCTGGGAA-CTCTTTGAGGTGAAGCAAGGAACAGAG 186 Query 221 ACAGTGCGTGAGTATTATAACGAGTTCCTTAAGAAGGTCAAGAACCTCGGAAGAGAGTTG 280 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 187 ACAGTGCGTGAGTATTATAAAGAGTTCCTTAAGAAGGTCAAGAACCTGGGAAGAGAGTTG 246 Query 281 GAGGAAGAGCAGCTGGCGTGTCTGTTCCAGGAAGGGCTACGCGAGGAGTTGCAGGAAGGG 340 ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 247 GAGGAAGAGGAGCTGGCGTGTCTGTTCCAGGAAGGGCTACTCGAGGAGTTGCACGAAGGG 306 Query 341 GTATGTGCAGCGAACTGCGGATGGATCCTTAATTATGTGTCAGATGTAGTTGATGAAGCT 400 ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 307 GTACGTGCAGCGAACTGCGGATGGATCCTCAATTATGTGTCAGATGTAGTAGATGAAGCT 366 Query 401 GAGAAGGTAGAGGCCAAACTTAGAAGCATCAAGGAAAAGGTGCCGCTCGTGTCTGAGGAG 460 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 367 GAGAAGGTAGAGGCCAAACTTAGAAGCACCAAGGAAAAGGTGCCGCTCGTGTCTAAGGAA 426 Query 461 TTTGCAGATGTTGACTGCGGACAAAGCAATTTGGGCCGACCCGCATCCGAAGATGAGGTG 520 |||| |||||||| | || ||||| |||||||| ||||||||||||| Sbjct 427 CTTGCTGATGTTGA-T-------------TT-GGGCCAACCCGCATTCGAAGATGAGGTG 471 Query 521 GAGAGCAAACCCT 533 ||||||||||||| Sbjct 472 GAGAGCAAACCCT 484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23140610619 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5