BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61160.1
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg907336 jgi|Araly1|907336|Al_scaffold_0002_417 625 1e-178
> Ahg907336 jgi|Araly1|907336|Al_scaffold_0002_417
Length=516
Score = 625 bits (338), Expect = 1e-178
Identities = 445/493 (90%), Gaps = 21/493 (4%)
Strand=Plus/Plus
Query 44 ACCAGGTCGATCAAGACATCTGGTGAACCAAAAAACTTTGAGC-TCACAGGGGTAGTTGG 102
||| |||||||||||| ||||||||| |||||||||||||||| || ||| || ||| ||
Sbjct 10 ACCGGGTCGATCAAGAAATCTGGTGACCCAAAAAACTTTGAGCGTC-CAGTGGCAGTCGG 68
Query 103 GGAGGAGGATCAGCCACCCCGAGAAGCTTCTGAGCGCGGAGCCTTCGAT-GAGTCTAAGC 161
||||||||||||||| ||||||||||||||| || |||||| ||||| | ||||||||||
Sbjct 69 GGAGGAGGATCAGCCGCCCCGAGAAGCTTCTCAGGGCGGAGACTTCG-TCGAGTCTAAGC 127
Query 162 TGGTTGACGTCAACATTGCCTTGAGCTGGGAAGC-CTTTGAGGTGAAGCAAGGAACAGAG 220
||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 128 CGGTGGACGTCAACATTGCCTTGAGCTGGGAA-CTCTTTGAGGTGAAGCAAGGAACAGAG 186
Query 221 ACAGTGCGTGAGTATTATAACGAGTTCCTTAAGAAGGTCAAGAACCTCGGAAGAGAGTTG 280
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 187 ACAGTGCGTGAGTATTATAAAGAGTTCCTTAAGAAGGTCAAGAACCTGGGAAGAGAGTTG 246
Query 281 GAGGAAGAGCAGCTGGCGTGTCTGTTCCAGGAAGGGCTACGCGAGGAGTTGCAGGAAGGG 340
||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 247 GAGGAAGAGGAGCTGGCGTGTCTGTTCCAGGAAGGGCTACTCGAGGAGTTGCACGAAGGG 306
Query 341 GTATGTGCAGCGAACTGCGGATGGATCCTTAATTATGTGTCAGATGTAGTTGATGAAGCT 400
||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 307 GTACGTGCAGCGAACTGCGGATGGATCCTCAATTATGTGTCAGATGTAGTAGATGAAGCT 366
Query 401 GAGAAGGTAGAGGCCAAACTTAGAAGCATCAAGGAAAAGGTGCCGCTCGTGTCTGAGGAG 460
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 367 GAGAAGGTAGAGGCCAAACTTAGAAGCACCAAGGAAAAGGTGCCGCTCGTGTCTAAGGAA 426
Query 461 TTTGCAGATGTTGACTGCGGACAAAGCAATTTGGGCCGACCCGCATCCGAAGATGAGGTG 520
|||| |||||||| | || ||||| |||||||| |||||||||||||
Sbjct 427 CTTGCTGATGTTGA-T-------------TT-GGGCCAACCCGCATTCGAAGATGAGGTG 471
Query 521 GAGAGCAAACCCT 533
|||||||||||||
Sbjct 472 GAGAGCAAACCCT 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23140610619
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5