BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61170.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475202 jgi|Araly1|475202|fgenesh2_kg.2__332__AT1G61170.1 1465 0.0
Ahg471247 jgi|Araly1|471247|fgenesh2_kg.1__1201__AT1G11120.1 148 6e-35
> Ahg475202 jgi|Araly1|475202|fgenesh2_kg.2__332__AT1G61170.1
Length=1000
Score = 1465 bits (793), Expect = 0.0
Identities = 900/950 (95%), Gaps = 14/950 (1%)
Strand=Plus/Plus
Query 1 GCTGTCACCACACAACACAACC-AAG-G-A-GTACTACTCTCTAATCTCCGATCAAACGA 56
|||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||
Sbjct 1 GCTGTCACCACACAACACAACCAAAGAGTACTTACTACTCTCTAATCTCCGATCAAACGA 60
Query 57 CGTCGtctc-t-tctctctc-tctct-AATGGGTAATTGCTGCGTCAGCTCCGGTACCAC 112
|||| |||| | |||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 61 CGTCTTCTCTTCTCTCTCTCTTCTCTGAATGGGTAATTGCTGCGTCGGCTCCGGTACCAC 120
Query 113 CGATCGGGAAAACGAGAACGTTTCCGACAAGAACACAACCATTGTCGAAGAAGAGACAGT 172
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGATCGGGAAAACGAGAACGTTTCCGACAAGAACACAACCATTGTCGAAGAAGAGACAGT 180
Query 173 AGTCAAAGAAGTCTTGTCAGAGACAACCTTGTTCACTCCTTCCTCTAGTTTCCGCACTTC 232
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AGTCAAAGAAGTCTTGTCTGAGACAACCTTGTTCACTCCTTCCTCTAGTTTCCACACTTC 240
Query 233 GACGTTCAAAGACCCGGTGAAGACCAAGATCCGAGAAGATGAGGAGAAAAAACCCGGTTT 292
|||| ||||||| |||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 241 GACGATCAAAGATCCGGTGAAGAAGAAGATCCGAGAAGAAGAGGAGAAGAAACCCGGTTT 300
Query 293 CTTGAAAATGGCTTCAGACCCGGTTTTGATCCGACCCGGTTCGGTTGATCCTGAAGAAGG 352
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 301 CTTGAAAATGGCTTCAGACCCGGTTATGATTCGACCCGGTTCGGTTGATCCTGAAGAAGG 360
Query 353 CTCTGAGGTTTCGGAGATTTGTAGCTTGAGTTTGAGCGAGAGTGTGTCTTCAACGGTTGT 412
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCGGAGGTTTCGGAGATTTGTAGCTTGAGTTTGAGCGAGAGTGTGTCTTCAACGGTTGT 420
Query 413 GATGAATGGTTACGATGAGGAACATGTGATGATGAAACAGAGGAAATCTCAGAGATCTCC 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 GATGAATGGTTACGATGAGGAAGATGTGATGATGAAACAGAGGAAATCTCAGAGATCTCC 480
Query 473 GGCGAAAACTCGGACCCAGGTCACCGGTAATAATTATCCGACCCGGAGAACTGATCAATC 532
||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 GGCGAAAGCTCGGACCCGGGTCACTGGTAATAATTATCCGACCCGGAGAACTGATCAATC 540
Query 533 TCCACGTAAGAGAAACAATGGTACATGTAATGGAGCGAGATACGGGTCGGGTGTGAGAGA 592
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 541 TCCACGTAAGAGAAACAACGGCACGTGTAATGGAGCGAGATACGGGTCGGGTGTGAGAGA 600
Query 593 CCCGGGTGAGAGATCCGGAAGAAGGTCAAGATCGCCGGCGACGAATAGATCGGTGATGGA 652
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 CCCGGGTGAGAGATCCGGAAGAAGGTCGAGATCGCCGGCGACGAATAGATCGGTGATGGA 660
Query 653 TTCGAATCAGAGTAGTCGGGTGGGTGGGGCAAAGACTAGGAAGAATAATCAGTCTCCGGG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTCGAATCAGAGTAGTCGGGTGGGTGGGGCAAAGACTAGGAAGAATAATCAGTCTCCGGG 720
Query 713 TCGGGTTAGACTAGATCCGGCTAAAAACGGGTTGGATCAGCAACAGCATCAGAATTACGG 772
|||||| || ||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 721 TCGGGTCAGGCTAGATCCGAATAAAAACGGTTTGGATCAGCA---GCATCAGAATTACGG 777
Query 773 TTATACCACAGAGGAATTGTTAGAGAACCCGCTTGTTTCGTTAGAGTGTTTCATATTTCT 832
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTATACCACTGAGGAATTGTTAGAGAACCCGCTTGTTTCGTTAGAGTGTTTCATATTTCT 837
Query 833 TTGAAAAAGAAGAATATTTCGATGGGAATAATGTCTTCTCATTT-GACGTTGGATTCATA 891
||||||| ||||||||||||||||||| ||| | ||||||||| ||||||||||| ||
Sbjct 838 CTGAAAAA-AAGAATATTTCGATGGGAAAAATATTTTCTCATTTTGACGTTGGATTTGTA 896
Query 892 ATTCGTAAAGCTACTTACTTAATTACGTTACCTCTGTAATTCATTTCTGT 941
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 897 ATTCGTAAAGCTACTTACTTAATTACGT-ACCTCTGTAATTCATTTCTGT 945
> Ahg471247 jgi|Araly1|471247|fgenesh2_kg.1__1201__AT1G11120.1
Length=1141
Score = 148 bits (80), Expect = 6e-35
Identities = 305/407 (75%), Gaps = 42/407 (10%)
Strand=Plus/Plus
Query 154 TTGTCGAAGAAGAGACAGTAGTCAAAGAAGTCTTGTCAGAGACAACCTTGTTCACTCCTT 213
||||||| ||||||||||||||||||||||||||||| || || || ||| ||||| |
Sbjct 389 TTGTCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACTACATTGCTCACT--T- 445
Query 214 CCTCTAGTTTCCG-CACTTCGACGTTC-A-AAGACCCGGTGAAGACCAAGATCCGAGAAG 270
|||||| | | || ||||||| | | |||| | || ||| ||||| | |||||
Sbjct 446 CCTCTAA---C-GACAATTCGACGGTGGATAAGAT--GACGACGACAAAGATTCAAGAAG 499
Query 271 ATGAGGAGAAAAAACCCGGT-TTCTTGAAAATG--GCTTCA-GACCCGGTTTTGATCCGA 326
|||||||||| |||||||| || ||| | | ||| || || |||||||||| || |
Sbjct 500 ATGAGGAGAAGAAACCCGGAATTGTTGTCGACGTAGCT-CAAGAACCGGTTTTGA-CCAA 557
Query 327 -CCCGGTTCGGTTGATCCTGAAGAAGGCTCTGAGGTTTCGGAGATTTGTAGCTTGAGTTT 385
|||||| || |||| || ||| |||| || |||||||||||||||||||| || |
Sbjct 558 GCCCGGTACGATTGAACCCGAAAAAGGATCGGAGGTTTCGGAGATTTGTAGTTT-A---- 612
Query 386 GAGCGAGAGTGTGTCTTCAACGGTTGTGATGAATGGTTACGATGAGGAACATGTG-AT-- 442
||||||||| || ||| || | |||| | ||| ||||| |||| | | ||| |
Sbjct 613 -AGCGAGAGTTTG-CTTT--CGATCGTGA--A-TGGATACGACGAGGGAGAAGTGCAACA 665
Query 443 GATGAAA-CAGAGGAAATCT--CAGAGATCTCCGGCGAAAACTCGGACCCAGGTCACCGG 499
||||||| | ||| | | |||||||||||||||||| |||||| || ||||| ||
Sbjct 666 GATGAAATCTCAGGTAGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCAT-GG 724
Query 500 TAATAATTATCCGACCCGGAGAACTGATCAA-TCTCCACGTAAGAGA 545
| || |||||| | ||||||||| ||| | ||||| |||||||||
Sbjct 725 T--TAGTTATCCAAACCGGAGAACCGAT-ATGTCTCCTCGTAAGAGA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5