BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61180.2
Length=3305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg338250 jgi|Araly1|338250|fgenesh1_pg.C_scaffold_2000349 1862 0.0
Ahg924912 jgi|Araly1|924912|scaffold_200473.1 246 7e-64
Ahg338119 jgi|Araly1|338119|fgenesh1_pg.C_scaffold_2000218 235 1e-60
> Ahg338250 jgi|Araly1|338250|fgenesh1_pg.C_scaffold_2000349
Length=2739
Score = 1862 bits (1008), Expect = 0.0
Identities = 1672/1986 (84%), Gaps = 71/1986 (4%)
Strand=Plus/Plus
Query 172 GATCAAACACTGAATCGTATCTTTA-ATTGCTTAAT-TGGTAAAAGTTATATTCGAACCC 229
|||||||| ||||||| ||||||| | || || | ||||||| |||||||||||| ||
Sbjct 34 GATCAAACGCTGAATCACATCTTTAGA-TGGTT-TTGTGGTAAAGGTTATATTCGAAACC 91
Query 230 TCGAGAAGAATCTCAGAG-CTCTGCAGAGGGAAATGGAAGATCTCAGAGCAATTCAACAT 288
|| || ||||||||| || || || ||||||||||||||||||||| |||||| || ||
Sbjct 92 TCAAGGAGAATCTCACAGCCT-TGAAGAGGGAAATGGAAGATCTCAAAGCAATAAAAGAT 150
Query 289 GAGGTACAAAACAAG-GTAGCT-AGAGACGAGGCACGCCATCAACGAAGGCTTGAAGCTG 346
||||| || ||| || ||| | ||||| ||| ||| ||||||| ||| ||||||||||
Sbjct 151 GAGGTGCAGAAC-AGAGTA-TTGAGAGAGGAGATACGACATCAACAAAGACTTGAAGCTG 208
Query 347 TCCAGGTATGGCTTGA-CCGTGTCAATAGCGTTGATATA-GAGTGCAAAGATCTGCTAAG 404
|||||||||||||| | ||||||| ||||| ||||| || | | |||| |||| || ||
Sbjct 209 TCCAGGTATGGCTT-ACCCGTGTCGATAGCATTGATTTACAAAT-CAAAAATCTACTTAG 266
Query 405 T-GTTACTCCTGTTGAGCTTCAAAAGTTGTGTCTATGCGGTTTGTGTTCAAAATATGTAT 463
| || ||| ||| |||| || ||||||||||| || ||||| ||||||||| ||||||
Sbjct 267 TACTT-GTCCCGTTCAGCTCCAGAAGTTGTGTCTTTGTGGTTTATGTTCAAAAAATGTAT 325
Query 464 GTTCAAGCTACAAATATGGGAAAAAGGTATTCTTGTTACTGGAAGAGGTTAAGAAACTAA 523
|||| ||||||| |||||||||| |||||||||||| |||| |||||||||||||| |
Sbjct 326 GTTCGAGCTACAGTTATGGGAAAAGGGTATTCTTGTTGTTGGACGAGGTTAAGAAACTCA 385
Query 524 ACTCGGAGGGAAATTTTGACGAGGTTTCTCAGCC-GCCTCCAAGGTCTGAAGTTGAAGA- 581
|||| ||| | |||||||| | |||| || |||| ||| || | |||||||||| |||
Sbjct 386 ACTCAGAGAGTAATTTTGAAGTGGTTACTAAGCCTGCC-CCGATATCTGAAGTTG-AGAT 443
Query 582 GAGGCCTACTCAGCCTACGATTGGTCAGGAAGACATGCTCGAAA-AGGCATGGAACCGCC 640
|||| |||||||||||| |||||||||||| | |||||||||| | |||||||| ||||
Sbjct 444 GAGGTTTACTCAGCCTACTATTGGTCAGGAAAAGATGCTCGAAACA-GCATGGAATCGCC 502
Query 641 TTATGGAAGATGGAGTCGGAATCATGGGTCTGCACGGTATGGGTGGTGTAGGCAAAACAA 700
|||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |
Sbjct 503 TTATAGAAGATGGAGTCGGAATCATGGGTTTGCACGGCATGGGTGGTGTAGGAAAAACTA 562
Query 701 CCCTTTTCAAGAAAATCCACAACAAGTTCGCTGAAATAGGTGGTACG-TTTGACATTGTG 759
|||||||| | ||||||||||| ||||| ||||||||| ||||| | |||||| |||||
Sbjct 563 CCCTTTTCCATAAAATCCACAATAAGTTTGCTGAAATACCTGGTA-GATTTGACGTTGTG 621
Query 760 ATCTGGATCGTGGTGTCTAAAGGCGTA-ATGATTTCAAAGCTTCAAGAAGATATTGCAGA 818
|| ||||| |||||||| |||| | | | |||||||||||||||||||||||||||| |
Sbjct 622 ATATGGATTGTGGTGTCGCAAGGTGCAGA-GATTTCAAAGCTTCAAGAAGATATTGCA-A 679
Query 819 GAAA-CTACACCTTTGTGACGACCTGTGGAAGAACAAGAA-TGAAAGTGATAAGGCCACT 876
||| ||||||||||| ||||| |||||||| | || || |||||||| ||| ||| ||
Sbjct 680 AAAAGCTACACCTTTGCGACGAGGTGTGGAAGGATAA-AACTGAAAGTGTTAACGCCGCT 738
Query 877 GATATACACAGA-GTTTTAAAG-GGCAAGAGATTTGTTTTGATGCTAGATGATATATGGG 934
|||||||||| | |||||| || || |||||||||||||||||| |||||||||||||||
Sbjct 739 GATATACACA-ATGTTTTACAGAGG-AAGAGATTTGTTTTGATGTTAGATGATATATGGG 796
Query 935 AGAAAGTGGATTTAGAGGCCATTGGTA-TTCCCTA-TCCGAGTGA-AGTAAATAAATGCA 991
| |||||||||||| | ||| | || | || || | ||||| | || |||| |||||
Sbjct 797 ACAAAGTGGATTTACAAGCCCTCGG-AGTT-CCAATTCCGA-CCAGAGAAAATGGATGCA 853
Query 992 AAGTAGCATTCACGACACGTTCTCGGGAAGTTTGTGGG-GAGATGGGGGATCAT-AAGCC 1049
|||||||||||| || ||||| || ||||| |||||| | ||||||||||||| || ||
Sbjct 854 GAGTAGCATTCACCACTCGTTCCCGAGAAGTATGTGGGCG-GATGGGGGATCATGAA-CC 911
Query 1050 GATGCAAG-TCAACTGTTTGGAACCAGAGGATGCATGGGAGCTGTTCAAAAACAAGGTCG 1108
||| ||| |||| ||||||| |||| |||| |||||||| |||| || ||||||||||
Sbjct 912 AATGGAAGTTCAA-TGTTTGGGACCAAAGGAAGCATGGGAATTGTTTAAGAACAAGGTCG 970
Query 1109 GAGACAACACATTAAGTAGTGATCCTGTTATTGTGGAG-TTGGCAAGAGAGGTCGCTCAA 1167
|||||||||||||||| || |||||||| ||||| ||| || |||||| |||||||| ||
Sbjct 971 GAGACAACACATTAAGAAGAGATCCTGTCATTGTCGAGCTT-GCAAGAAAGGTCGCTGAA 1029
Query 1168 AAATGTCGTGGTCTGCCATTGGCGCTCAACGTCATTGGTGAGACAATGTCATCTAAAACT 1227
|||||||||||||||||| | |||||||| |||||||||||| | ||| |||||||||||
Sbjct 1030 AAATGTCGTGGTCTGCCACTAGCGCTCAATGTCATTGGTGAGGCGATGGCATCTAAAACT 1089
Query 1228 ATGGTACAAGAATGGGAGCATGCAATCCATGTTTTTA-ATACATCCGCTGCAGAGTTTTC 1286
|||||||||||||||||| |||||||| ||||||| | | |||||||| ||||||||| |
Sbjct 1090 ATGGTACAAGAATGGGAGGATGCAATCGATGTTTTGACA-ACATCCGCCGCAGAGTTTCC 1148
Query 1287 TGACATGC-AAAACAAAATTCTTCCGATTCTCAAGTACAGCTACGATAGCTTGGGGGATG 1345
|||| | | |||| ||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 1149 TGACGT-CAAAAATAAAATTCTTCCAATTCTAAAGTACAGCTACGATAGCTTGGTGGATG 1207
Query 1346 AACATATCAAGTCGTGTTTCCTATATTGTGCTCTGTTTCCTGAAGATGGTGAGATATATA 1405
||||||||||| |||||||||||||||||||| ||||| |||||| | | ||| |||
Sbjct 1208 AACATATCAAGAAATGTTTCCTATATTGTGCTCTCTTTCCGGAAGATTATAATATAAATA 1267
Query 1406 ACGAAAAGTTGATAGACTACTGGATATGCGAAGGATTCATCGGAGAAGAC-CAAGTTATA 1464
|||| ||||||||||||||||||||||||||||||||| ||||| || | ||||||
Sbjct 1268 TGGAAACGTTGATAGACTACTGGATATGCGAAGGATTCATTGGAGACTACTC-TGTTATA 1326
Query 1465 AAAAGAGCGAGGAATAAGGGTTATGCGATGCTCGGTACCCTTACCCGTGCAAATTTGCTA 1524
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||
Sbjct 1327 AAAAGAGCGAGGAATAAGGGTTATACGATGCTTGGTACCCTTATCCGTGCAAATTTACTG 1386
Query 1525 ACAAAGGTTGGT-ACATATTATTGTGTGATGCATGACGTGGTTCGTGAAATGGCTTTATG 1583
|| |||||||| | | || | ||||||||||||||||||||| ||||||||| ||||
Sbjct 1387 ACGGAGGTTGGTAAAACATCGGT-TGTGATGCATGACGTGGTTCGCGAAATGGCTCTATG 1445
Query 1584 GATTGCTTCCGATTTTGGGAAACAGAAAGAGAATTTTGTTGTGCAAGCAGGAGTCGGGTT 1643
|||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||| ||
Sbjct 1446 GATTGCATCCGATTTTGGGAAACAGAAGGAGAATTTTGTGGTGCGAGCAGGAGTCGGATT 1505
Query 1644 ACATGAAATACCAAAAGTCAAGGATTGGGGAGCTGTAAGAAAG-ATGTCATTAATGGATA 1702
||||||||||||| |||||||||||||||||||||| || ||| |||||||||||| | |
Sbjct 1506 ACATGAAATACCAGAAGTCAAGGATTGGGGAGCTGTGAG-AAGAATGTCATTAATGAAGA 1564
Query 1703 ATGATATTGAAGAGATAACATGCGAG-TCCAAGTGTTCTGAACTTACAACTTTGTTCCTT 1761
|| ||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 1565 ATAATATTAAAGAGATAACATGTG-GTTCCAAGTGTTCTGAACTTACAACTTTGTTCCTT 1623
Query 1762 CAA-AGTAATAAATTGAAGAATCTACCAGGTGCATTCATTCGGTATATGCAAAAGCTAGT 1820
||| || ||| |||||||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 1624 CAAGAG-AATCAATTGAAGAATCTATCAGGTGAATTCATTCGGTTTATGCAAAAGCTAGT 1682
Query 1821 TGTTTTGGATCTTTCATATAATCGTGACTTCAATAAACTTCCAGAGCAGATATCGGGGCT 1880
|||||||||||| |||| ||||| |||||| | ||||||||||||||||||| | |||
Sbjct 1683 TGTTTTGGATCTGTCATGGAATCGCAACTTCAGTGAACTTCCAGAGCAGATATCAGAGCT 1742
Query 1881 GGTCTCGTTGCAGTTTCTTGACTTGTCGAATACAAGTATAGAGCA-CATGCCTATTGGTC 1939
|| ||| ||||||| ||||||||||||| ||||| ||||||||| | ||||| |||||
Sbjct 1743 GGCCTCCTTGCAGTATCTTGACTTGTCGGGTACAAATATAGAGCAAC-TGCCTGTTGGTT 1801
Query 1940 TCAAAGAGTTGAAAAAGCTAACTTTCCTGGATTTGACTTATACTGATCGACTTTGTAGTA 1999
|| | ||||||||||| ||||| |||||||||| | |||| ||| | | || |||
Sbjct 1802 TCCATGAGTTGAAAAATTTAACTCAACTGGATTTGAGTAATAC--ATCAA-TCTGCAGTG 1858
Query 2000 TCAGTGGGATATCAAGGTTGTTGAGTTTAAGA-TTGTTGAGACTGCTAGGGTCTAAAGTT 2058
| ||| |||||||| ||||| |||||||||| || |||| ||| ||| ||||| |||
Sbjct 1859 TGGGTGCGATATCAAAGTTGTCGAGTTTAAGAATT-TTGAAACTAAAAGGTTCTAATGTT 1917
Query 2059 CATGGAGATGCTA-GCGTATTGAAGGAGCTGCAGCAATTGCAGAATCTACAAGAGCTAGC 2117
|||| |||| || || || |||| |||||||||| ||| || ||||||||| ||| |
Sbjct 1918 CATGCCGATG-TAAGCTTAGTGAAAGAGCTGCAGCTCTTGGAGCATCTACAAGTTCTAAC 1976
Query 2118 CATAAC 2123
||||||
Sbjct 1977 CATAAC 1982
Score = 424 bits (229), Expect = 3e-117
Identities = 477/589 (81%), Gaps = 48/589 (8%)
Strand=Plus/Plus
Query 2200 CAAAAGCCATTCGATTTATCATT-CTTGGCGAGTATGGAGAATCTTAGTTCCCTAC-GGG 2257
|||||| || || || ||||||| | || ||||||||||||||||| ||| || | ||
Sbjct 2137 CAAAAGGCAATCAATATATCATTGC-TGACGAGTATGGAGAATCTTCGTTTGCT-CATGG 2194
Query 2258 TGGAAAATAGTTAT-TTCTC-G-GA--GAT---AA----A-GTGCAGAGAAAGCGAGACA 2304
|||| |||||| || || || | || || || | ||||| ||||| | |||||
Sbjct 2195 TGGAGAATAGTCATGTT-TCAGAGATTAATACAAATCTGATGTGCATAGAAAACAAGACA 2253
Query 2305 GAATCGTCTTATTTACGCATCAATCCGAAAATTCCATGCTTTACCAACCTCTCACGACTG 2364
|| |||||| ||||| || ||||||||||||||||||||||||||||||||| | || |
Sbjct 2254 GACTCGTCTGATTTA--CA-CAATCCGAAAATTCCATGCTTTACCAACCTCTC-C-ACCG 2308
Query 2365 -GAG-ATAATGAAGTGCCATAGCATGAAGGATCTGACTTGGATAT-TGTTTGCTCCAAAT 2421
| | |||| | ||||||||||| ||||||||||||||| | | ||||||||||||||
Sbjct 2309 TGTGTATAACGTCCTGCCATAGCATTAAGGATCTGACTTGGCT-TCTGTTTGCTCCAAAT 2367
Query 2422 CTTGTCGTGC-TACTCATTGAAGATTCAAGAGAAGTGGGAGAAATAATAAACAAAGAGAA 2480
|||||| | | ||| |||| ||||||||||||||||| |||||| ||||||||||||||
Sbjct 2368 CTTGTC-TACCTACGCATTTCAGATTCAAGAGAAGTGGAAGAAATTATAAACAAAGAGAA 2426
Query 2481 AGCAACCAATCTTACAAGTATTACACCATTTCTGAAACTAGAATGGTTGATTTTGTATAA 2540
|||||||||||||||| ||||||||||||||| ||||||||||| || | | || | ||
Sbjct 2427 AGCAACCAATCTTACAGGTATTACACCATTTCAGAAACTAGAATTCTTCAGTGTGGAAAA 2486
Query 2541 TTTGCCGAAGCTGGAGAGTATCTACTGGAGTCCTCTCCCCTTTCCGGTT-TTGTTG-ACC 2598
||||||||||||||||||||||| ||||||||| |||||||| || ||| | ||
Sbjct 2487 ACTGCCGAAGCTGGAGAGTATCTACAAGAGTCCTCTTCCCTTTCCA-TTATTGAAGCAC- 2544
Query 2599 ATGGATGTTTCAAACTG-T-CC-AAAGCTGAGAAAGCTTCCATTAAATGCTACAAGTGTT 2655
|| || || || | || | || |||||||||||||||||| ||||||||||||||||||
Sbjct 2545 AT--AT-TTGCATATTGCTGCCCAAAGCTGAGAAAGCTTCCCTTAAATGCTACAAGTGTT 2601
Query 2656 TCAAAAGTTGAAGAATTTGAAATACATATGTATCCTCCTCCAGAACAGGAAAATGAGCTT 2715
|| |||||| |||||| ||||| | ||| || || | | | | ||| |||||||
Sbjct 2602 CCACTAGTTGATGAATTTAAAATAGAGATGGAT--TCG-C-A-A---G-AAACTGAGCTT 2652
Query 2716 GAATGGGAGGACGATGATACCAAAAATCGATTCTTGCCTTCAATCAAAC 2764
|||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2653 GAATGGGAGGACGAAGATACCAAAAATCGTTTCTTGCCTTCAATCAAAC 2701
> Ahg924912 jgi|Araly1|924912|scaffold_200473.1
Length=325
Score = 246 bits (133), Expect = 7e-64
Identities = 240/287 (84%), Gaps = 25/287 (9%)
Strand=Plus/Plus
Query 2383 AGCATGAAGGATCTGACTTGGATATTGTTTGCTCCAAATCTTGTCGTGC-TACTCATTG- 2440
||||||||||||||||||||| |||||||||||||||||||||| || | ||| |||
Sbjct 18 AGCATGAAGGATCTGACTTGGCTATTGTTTGCTCCAAATCTTGT-GTCCCTACA-ATTTC 75
Query 2441 AAGATTCAAGA-GAAGTGGGAGAAATAATAAACAAAGAGAAAGCAACCAATCTTACAAG- 2498
|| ||||| || ||||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 76 AATATTCA-GATGAAGTGGAAGAAATTATAAACAAAGAGAAAGCAACCAATCTTACA-GC 133
Query 2499 TATTACACCATTTCTGAAACTAGAATGGTTGAT-TTTG-TATAATTTGCCGAAGCTGGAG 2556
|||| ||||||||| |||||||||| | || || |||| | || |||||| |||||||||
Sbjct 134 TATTTCACCATTTCAGAAACTAGAAAGCTT-ATATTTGGTTTA-TTTGCCTAAGCTGGAG 191
Query 2557 AGTATCTACTGGAGTCCTCTCCCCTTTCCGGTT-TTGTTG-ACCATGGA-TGT-T-TCAA 2611
||||||||| ||||||||| |||||||| || ||| | || || | || | ||
Sbjct 192 AGTATCTACAAGAGTCCTCTTCCCTTTCCA-TTATTGAAGCAC-ATA-ACTGCATATCG- 247
Query 2612 ACTGTCCAAAGCTGAGAAAGCTTCC-ATTAAATGCTACAAGTG-TTT 2656
|||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 248 -CTGTCCAAAGCTGAGAAAGCTTCCCAT-AAATGCTACAAGTGATTT 292
> Ahg338119 jgi|Araly1|338119|fgenesh1_pg.C_scaffold_2000218
Length=3012
Score = 235 bits (127), Expect = 1e-60
Identities = 840/1166 (72%), Gaps = 122/1166 (10%)
Strand=Plus/Plus
Query 602 TTGGTCAGGAAGAC-ATGCTCGA-AAAGGCATGGAACCGCCTTATGGAAGATGGAGTCGG 659
||||||| |||| | |||||||| ||| || ||||| | || |||||||||||||| |
Sbjct 467 TTGGTCAAGAAG-CAATGCTCGAGAAA-GCGTGGAAACATCTCATGGAAGATGGAGTTAG 524
Query 660 AATCATGGGTCTGCACGGTATGGGTGGTGTAGGCAAAACAACCCTTTTCAAGA-AAATCC 718
|| |||||| || | |||||||| |||||||| || ||||| |||||| | | ||||
Sbjct 525 TATTATGGGTATGTATGGTATGGGCGGTGTAGGGAAGACAACGCTTTTC-TCACAGATCC 583
Query 719 ACAACAAGTTC-GCTGAA--A--TAGGTGGTACGTTTGACATTGTGATCTGGATCGTGGT 773
|||| |||||| | | || | | |||| | |||||| ||||||| ||| | |||||
Sbjct 584 ACAATAAGTTCAG-T-AACGACCGACGTGG-A--TTTGACTTTGTGATTTGGGTTGTGGT 638
Query 774 GTCTAAAGGCG-TA-ATGATTTCA-AAGCTTCAAGAAGATATTGCAGAGAAACTACACCT 830
||||||| | | || ||| | | ||| ||||||| || || || ||||| | ||
Sbjct 639 GTCTAAA-GAGTTACATG--TGGAGAAGATTCAAGATGAAATCGCTCAGAAAGTTGGTCT 695
Query 831 TTGT-GACGACCTGTGGAA-GAACAAGAATGAAAGTGATAAGGC-CACT-GATATACACA 886
| || || || | |||||| || ||| || ||| | | ||||| | | | | || ||
Sbjct 696 TGGTGGA-GAGCAGTGGAACCAAAAAG-ATAAAAATCAGAAGGCTGA-TCG-TTTATTCA 751
Query 887 GAGTT-TTAAAGGGCAAGAGATTTGTTTTGATGCTAGATGATATATGGGAGAAAGTGGAT 945
| || |||||| || |||||||| ||| | ||||||| ||||||||||| |||||
Sbjct 752 -ATTTCTTAAAGAAAAAAAGATTTGTCTTGTTTTTAGATGACATATGGGAGAAGGTGGAA 810
Query 946 TTAGA-GGCCATTGGTA-TTCCCTATCCGAG-TGAAGTAAATAA--ATGCAAAGTAG-CA 999
||| | | || || | |||| |||| || | | ||| || ||| ||| | | ||
Sbjct 811 TTA-ACTGAGATCGG-AGTTCCGGATCCAAGAT-CA-CAAA-AAGGATGTAAA-TTGTCA 864
Query 1000 TTCACGACACGTTCTCGGGAAGTTTGTGGGGAG-ATGGGGGATCATAAG--CCGATGCAA 1056
|| || || ||||||| |||||| ||| | | | ||||||| | | ||| || ||| ||
Sbjct 865 TTTACAACTCGTTCTCAGGAAGTATGT-GCGCGCATGGGGG-TTA-AAGACCCAATGGAA 921
Query 1057 GTCAACTG-TT--TGGAACCAGAGGAT-GCATGGGAGCTGTT-CAAAAACAAGGTCGG-- 1109
||||| || || |||| | | | | |||| || |||| ||| || ||||| ||
Sbjct 922 GTCAAATGCTTGACGGAA--A-ACG-TCGCATTTGATTTGTTCCAAGAA-AAGGTTGGAC 976
Query 1110 AGACAACACATTAAGTAGTGATCCTGTTATTGTGGA-GTTGGCAAG-AGAGGTCGCTCA- 1166
||| ||||| || | | ||||||| | || || || ||||| | | | || |
Sbjct 977 AGATAACAC-TTGA-TTGTGATCCAGGAATCCCCGACCTT-GCAAGAACA-ATTGC-AAG 1031
Query 1167 AAAATGTCGTGGTCTGCCATTGGCGCTCAACGTCATTGGTGAGACAATGTCAT-CTAA-A 1224
||||||| |||| || |||||||| ||||||||||| ||||| |||||||| | | || |
Sbjct 1032 AAAATGTTGTGGCCTACCATTGGCCCTCAACGTCATAGGTGAAACAATGTCTTGC-AAGA 1090
Query 1225 ACTATGGTACAAGAATGGGAG-CATGCAATCCATGTTTTTAATACATCCGCTGCAGAGTT 1283
| | ||||||||| || | || || | | ||||| ||| ||| ||||||||||||
Sbjct 1091 A-GACAATACAAGAAT-GGCGTCACGCTGTAGAAGTTTTCAATTCATACGCTGCAGAGTT 1148
Query 1284 TTCTGACATGCAAAACAAAATTCTTCCGATTCTCAAGTACAGCTACGATAG-CTT--GGG 1340
| || |||| | | || || |||||| || | ||||| ||||||||||| ||| |||
Sbjct 1149 TGATGGCATGGACGATAAGATCCTTCCGCTTTTGAAGTATAGCTACGATAGTCTTAAGGG 1208
Query 1341 GGATGAACATATCAAGTCGTGTTTCCTATATTGTGCTCTGTTTCCTGAAGATGGTGAGAT 1400
||| | | ||||||| |||||||| || ||||| ||| | ||||| |||||| | || |
Sbjct 1209 GGA-G-A-ATATCAAATCGTGTTTGCTGTATTGCGCTTTATTTCCAGAAGATACT-AG-T 1263
Query 1401 A-TAT-AACGAA-AAGTTGATAGACTACTGGATATGCGAAGG--ATTCATCGGA--GAAG 1453
| | | || ||| || |||||||| ||||||||||||| ||| ||| || || ||||
Sbjct 1264 ATTCTGAAAGAAGAA-TTGATAGAGTACTGGATATGCG-AGGAAATT-AT-AGATGGAAG 1319
Query 1454 ACCAAGTTATAAAAAGAGC-GAGGAATAAGGGTTATGCGATGCTCGGTACCCTTACCCG- 1511
||| |||| |||| || |||| | |||||||||| ||| |||||| ||| ||
Sbjct 1320 -TGAAGGTATAGAAAGGGCTGAGG-ACAAGGGTTATGAGATTATCGGTAGTCTTGTTCGC 1377
Query 1512 TGCA--AAT-TTGCT--A-----ACAA-AGG-TTGGTACATA-TTATTGT--GTGATGCA 1556
| || | | ||| | | || ||| |||| ||| | || |||| | |||||
Sbjct 1378 T-CATCATTGTTGATGGAGGGGGTTAATAGGTTTGG-ACAAAGTT-TTGTCACT-ATGCA 1433
Query 1557 TGACGTGGTTCGTGAAATGGCTTTATGGATTGCTTCCGATTTTGGGAAA-CAGAAAGAGA 1615
||| || ||||||||||||||||||||||||||||| || | |||||| || ||||||
Sbjct 1434 TGATGTTGTTCGTGAAATGGCTTTATGGATTGCTTCTGAACT-GGGAAAACAAAAAGAGG 1492
Query 1616 ATTTTGTTGTGCAAGCAGGAGTCGGGTTACATGAAATACCAAAAGTCAAGGATTGGGGA- 1674
|| |||||| ||||| || || |||| |||||| ||||| || ||| ||||| |
Sbjct 1493 CCTTCATTGTGCGTGCAGGTGTTGGCTTACCTGAAATTCCAAAGGTTAAGAATTGGA-AT 1551
Query 1675 GCTGTAAGAAAGATGTCATTAATGGA 1700
||||| |||| |||||| || |||||
Sbjct 1552 GCTGTGAGAAGGATGTCGTTGATGGA 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124752724294
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5