BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G61215.1
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924910 jgi|Araly1|924910|scaffold_200471.1 2307 0.0
> Ahg924910 jgi|Araly1|924910|scaffold_200471.1
Length=1471
Score = 2307 bits (1249), Expect = 0.0
Identities = 1405/1479 (95%), Gaps = 16/1479 (1%)
Strand=Plus/Plus
Query 508 CACGCGTGATTATTA-TTTTTGATGGTTATGGTGATGATGACGACGACAATGGAGAGTGA 566
||||||||| | ||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 CACGCGTGA-T-TTATTTTTTGATGGTTATGGTGATGATAACGACGACGATGGAGAGTGA 58
Query 567 TTGGGGAACATGGGAGGAGCTTCTTCTCGGCGGCGCTGTTCTCCGTCATGGAACCGGTGA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTGGGGAACATGGGAGGAGCTTCTTCTCGGCGGCGCTGTTCTCCGTCATGGAACCGGTGA 118
Query 627 TTGGACCGTCGTTGCCGACGAACTCCGTTCTCATTCTTTACCTGAGATTTTCACACCTGA 686
||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 CTGGACCGTCGTCGCTGAGGAACTCCGTTCTCATTCTCTACCTGAGATTTTCACACCTGA 178
Query 687 GATATGCAAGGCCAAGTACAAAGACTTGCGAAAACGTTATGTGGGATGCAAAGCTTGGTT 746
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 179 GATATGCAAGGCCAAGTACAAGGACTTGCGAAAACGTTATTTGGGATGCAAAGCTTGGTT 238
Query 747 TGAAGAGCTTAAGAAGAAACGAGTAGCTGAGCTTAAAGCAGCTTTACTTAAATCCGAAGA 806
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 239 TGAAGAGCTTAAGAAGAAACGAGTAGCTGAGCTTAAGGCAGCTTTACTTAAATCCGATGA 298
Query 807 CTCTATTGGGTCTTTGGAATCAAAGCTTCAGAGTCTGAAGTCAGAAAGTAATGATGAATG 866
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 CTCGATTGGGTCTTTGGAATCAAAGCTTCAGAGTCTGAAGTCAGAAAGTAACGATGAATG 358
Query 867 TCATCAAAACAATTATGATTCTAGCCGAACGTTATCACTCGAACCCTCCCCAAAATCCGA 926
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 359 TCATCAAAACAATTATGATTCTAGCCGAACGTTATCACTTGAACCCTCCCCGAAATCCGA 418
Query 927 GGGCGGGGGAGAATGCACGAGCAAAGATACATCCAAAGACTTGTCATCAGTTGGTAGTTT 986
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGGCGGAGGAGAATGCACGAGCAAAGATACATCCAAAGACTTGTCATCAGTTGGTAGTTT 478
Query 987 CACACAGCAAGAGCTGACCACAACAAACTGGTCACCGGAAGCTAAGTCAGAAGCTCCAGT 1046
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 CACACAGCAAGAGCTGACCATAACAAACTGGTCACCGGAAGCTAAGTCAGAAGCTCCAGT 538
Query 1047 GGTAATAGAGCAAGAGAAGACGAAAGACCTATTACACAACGACATTTTCGAGTCAGTGTA 1106
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 539 AGTAATAGAGCAAGAGAAGACGAAAAACCTATTACACAGCGACATTTTTGAGTCAGTGTA 598
Query 1107 CGGAGGTGGAGGACAAGTGCTTCCGAGTATGAGGAAGAAACGAGGCAAGAGAAAACGAAA 1166
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 599 TGGGGGTGGAGGACAAGTGCTTCTGAGTATGAGGAAGAAACGAGGCAAGAGAAAACGGAA 658
Query 1167 AGATTGCAGTGTCAGTGTCGGTAAAGAAGTGATGGAAGTTAGCGCTGTGGAAGAAAGCGA 1226
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGATTGCAGTGTCAGTGTTGGTAAAGAAGTGATGGAAGTTAGCGCTGTGGAAGAAAGCGA 718
Query 1227 TTTGTTTGATACATCTGCGGATATTGCTAGCATTTATAGGAGTAAAGAAGCTGCTTCTAC 1286
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 TTTGTTGGATACTTCTGCGGATATTGCTAGCATTTCTAGGAGTAAAGAAGCTGCTTCTAC 778
Query 1287 TAGCAGCAGTCAAAGCCGAGGTCACAGTTTGGCTTTACCCAAAG-AGCTTATGAAGATAT 1345
|||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||
Sbjct 779 TAGCAGCAGTCAAAGCCGAGGTCATGGTTTGGCTATACC-AAAGGAGCTTATGAAGATAT 837
Query 1346 ACAACACTATTGCACAGAACGAATGTGCACTCGTCTTCCGTAGACGGCTTGATAGCCAGA 1405
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACAACACTATCGTACAGAACGAATGTGCACTCGTCTTCCGTAGACGGCTTGATAGCCAGA 897
Query 1406 AAAGAGGAAGATACAAGAAATTAGTACGGAGGCATATGGATTTAGACACTGTACAATCAA 1465
|||| || |||||||||||||| |||| |||||||||||||||||||||| |||||||||
Sbjct 898 AAAGGGGGAGATACAAGAAATTGGTACAGAGGCATATGGATTTAGACACTATACAATCAA 957
Query 1466 GAATCAACGGTTGTTCGATATCTTCGGCGAAAGAGCTTTTTAGGGACTTTCTTTTGGTGG 1525
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 GAATCAACGGTTGTTCGATATCTTCAGCGAAAGAGCTTTTTAGGGACTTTCTTTTGGTGG 1017
Query 1526 CGAACAATGCAGCTATTTTTTACTCTAAGAACACTCGAGAATACAAATCCGCGGTGGGAC 1585
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 1018 CGAACAATGCAGCTATTTTTTACTCTAAGAACACTCGTGAATACAAATCCGCGGTGAGCC 1077
Query 1586 TTAGAGACATTGTTACCAAGTCTCTAAGACACTATTTAACAGAAGATCATCCTCCTCATC 1645
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1078 TTAGAGACATTGTTACAAAGTCTCTAAGACACTATTTGACAGAAGATCATCATCCTCATC 1137
Query 1646 GCAGCAGCATTACTGCTGGAAGCACAAAGGTTGTGGTTCTTCATCAGAAATCGACATCTC 1705
|||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||
Sbjct 1138 GCAGCAGCATTACTGC---AAGCACAAAGGTTGTGGTTCTTCCTCAGAAATCTACTTCTC 1194
Query 1706 CTTCTGTCCGAACGAGTCTGGCAGCTAAAAAACCAAGAACCGGGGCGCACCCTCTTAAAA 1765
|||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CTTCTGTCAGAACGAGCCTGGGAGCTAAAAAACCAAGAACCGGGGCGCACCCTCTTAAAA 1254
Query 1766 CGGTTGTGCAAGATATGGCAAAGACTTCAAGTAGGGGTAACAAAAGGTCTGTTACGGATT 1825
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1255 CGGTTGTGCATGATATGGCAAAGACTTCAAGCAGGGGTAACAAAAGGTCTGTTACGGATT 1314
Query 1826 TACCAGTTTCTGCTGTGAAATCCTCGGCAGCGGGTAAGAAGGGAACTGCGGTA-AGA-AA 1883
||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||
Sbjct 1315 TACCAGTTTCTGCTGTGAAATCCTCAGCAGCGGGTAAGAAGGGAACAGCGGTAGAGAGAA 1374
Query 1884 -A--G-ACGGTAGACAAGCGAATCGCGGACTCGAATCTCCTGCATTGATGGGGAGAAAGC 1939
| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1375 GAAAGGACGGTAGACAAGCAAATCGTGGACTCGAATCTCCTGCATTGATGGGGAGAAAGC 1434
Query 1940 GGAACCGGGTTAGATGATTTTTGTATGAAGGGTTTGTTT 1978
|||||||||||||||||||||| |||||||||||||||
Sbjct 1435 GGAACCGGGTTAGATGATTTTT--ATGAAGGGTTTGTTT 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79341980335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5