BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G61226.1

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg907330 jgi|Araly1|907330|Al_scaffold_0002_411                     159    7e-39


> Ahg907330 jgi|Araly1|907330|Al_scaffold_0002_411
Length=594

 Score =  159 bits (86),  Expect = 7e-39
 Identities = 93/96 (97%), Gaps = 2/96 (2%)
 Strand=Plus/Plus

Query  143  GAAGCTGAATGGTTGCGGGAGGCAAGCAGTGGGATAATGATCTGCAAGTGGAAACTTCTT  202
            |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  285  GAAGCT-AAAGGTTGCGGGAGGCAAGCAGTGGGATAATGATCTGCAAGTGGAA-CTTCTT  342

Query  203  ACTTTTATCATATCCCATCAGCTCGAAAGTCTTGAT  238
            ||||||||||||||||||||||||||||||||||||
Sbjct  343  ACTTTTATCATATCCCATCAGCTCGAAAGTCTTGAT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9577052839


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5